Changeset f10b0c for src/Actions/FillAction/FillRegularGridAction.cpp
- Timestamp:
- Jun 11, 2012, 9:53:19 AM (13 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 95f965
- Parents:
- b9c69d
- git-author:
- Michael Ankele <ankele@…> (04/24/12 13:55:16)
- git-committer:
- Frederik Heber <heber@…> (06/11/12 09:53:19)
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/Actions/FillAction/FillRegularGridAction.cpp
rb9c69d rf10b0c 82 82 LinkedCell_deprecated * LC = NULL; 83 83 Tesselation * TesselStruct = NULL; 84 if (params.SphereRadius != 0.) {84 if (params.SphereRadius.get() != 0.) { 85 85 if ( atoms.size() == 0) { 86 ELOG(1, "You have given a sphere radius " << params.SphereRadius 86 ELOG(1, "You have given a sphere radius " << params.SphereRadius.get() 87 87 << " != 0, but have not select any molecules."); 88 88 return Action::failure; … … 92 92 93 93 // create tesselation 94 LC = new LinkedCell_deprecated(cloud, 2.*params.SphereRadius );94 LC = new LinkedCell_deprecated(cloud, 2.*params.SphereRadius.get()); 95 95 TesselStruct = new Tesselation; 96 (*TesselStruct)(cloud, params.SphereRadius );96 (*TesselStruct)(cloud, params.SphereRadius.get()); 97 97 98 98 // and create predicate … … 106 106 FillPredicate *voidnode_predicate = new FillPredicate( 107 107 IsVoidNode_FillPredicate( 108 Sphere(zeroVec, params.mindistance )108 Sphere(zeroVec, params.mindistance.get()) 109 109 ) 110 110 ); … … 112 112 if (surface_predicate != NULL) 113 113 Andpredicate = (Andpredicate) && !(*surface_predicate); 114 Mesh *mesh = new CubeMesh(params.counts , params.offset, World::getInstance().getDomain().getM());114 Mesh *mesh = new CubeMesh(params.counts.get(), params.offset.get(), World::getInstance().getDomain().getM()); 115 115 Inserter *inserter = new Inserter( 116 116 Inserter::impl_ptr( 117 117 new RandomInserter( 118 params.RandAtomDisplacement ,119 params.RandMoleculeDisplacement ,120 params.DoRotate )118 params.RandAtomDisplacement.get(), 119 params.RandMoleculeDisplacement.get(), 120 params.DoRotate.get()) 121 121 ) 122 122 );
Note:
See TracChangeset
for help on using the changeset viewer.