Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since 5344e4 was d82961, checked in by Frederik Heber <heber@…>, 13 years ago |
Added implementation of linked cell model part using LinkedCell.
- setPartition() sets Partition trafo and defines array bounds Dimensions.
- addNode() and deleteNode() are working.
- getStep() returns the number of neighbor shells needed.
- getSize() returns array size for a given dimension.
- getIndexToVector() returns index to LinkedCell for a given position.
- checkArrayBounds() and applyBoundaryConditions() check and apply domain's
boundary conditions.
- getNeighborhoodBounds() returns lower and upper bounds to get through all
LinkedCell's and gather neighbors.
- each is unit tested.
|
-
Property mode
set to
100644
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File size:
1.1 KB
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Line | |
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1 | /*
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2 | * LinkedCell_Model_inline.hpp
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3 | *
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4 | * Created on: Nov 18, 2011
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5 | * Author: heber
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6 | */
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7 |
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8 | #ifndef LINKEDCELL_MODEL_INLINE_HPP_
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9 | #define LINKEDCELL_MODEL_INLINE_HPP_
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10 |
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11 | // include config.h
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12 | #ifdef HAVE_CONFIG_H
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13 | #include <config.h>
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14 | #endif
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15 |
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16 | // have all includes only needed here extra
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17 | #ifdef HAVE_INLINE
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18 | #include "CodePatterns/Assert.hpp"
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19 | #endif
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20 |
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21 | /** Returns a reference to the cell indicated by LinkedCell_Model::internal_index.
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22 | *
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23 | * \return LinkedCell ref to current cell
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24 | */
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25 | #ifdef HAVE_INLINE
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26 | inline
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27 | #endif
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28 | const LinkedCell::LinkedCell& LinkedCell::LinkedCell_Model::getCell(const tripleIndex &index) const
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29 | {
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30 | return *N(index);
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31 | }
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32 |
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33 |
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34 | /** Returns size of array for given \a dim.
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35 | *
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36 | * @param dim desired dimension
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37 | * @return size of array along dimension
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38 | */
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39 | #ifdef HAVE_INLINE
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40 | inline
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41 | #endif
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42 | LinkedCell::LinkedCellArray::index LinkedCell::LinkedCell_Model::getSize(const size_t dim) const
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43 | {
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44 | ASSERT((dim >= 0) && (dim < NDIM),
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45 | "LinkedCell_Model::getSize() - dimension "
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46 | +toString(dim)+" is out of bounds.");
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47 | return N.shape()[dim];
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48 | }
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49 |
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50 |
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51 | #endif /* LINKEDCELL_MODEL_INLINE_HPP_ */
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