source: src/Fragmentation/Automation/FragmentScheduler.cpp@ 8acd85

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 8acd85 was 2344a3, checked in by Frederik Heber <heber@…>, 13 years ago

FragmentScheduler is now an Observer of JobsQueue and pool.

  • Property mode set to 100644
File size: 18.6 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2011 University of Bonn. All rights reserved.
5 * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
6 */
7
8/*
9 * \file FragmentScheduler.cpp
10 *
11 * This file strongly follows the Serialization example from the boost::asio
12 * library (see server.cpp)
13 *
14 * Created on: Oct 19, 2011
15 * Author: heber
16 */
17
18// include config.h
19#ifdef HAVE_CONFIG_H
20#include <config.h>
21#endif
22
23// boost asio needs specific operator new
24#include <boost/asio.hpp>
25
26#include "CodePatterns/MemDebug.hpp"
27
28#include <boost/bind.hpp>
29#include <boost/lexical_cast.hpp>
30#include <iostream>
31#include <vector>
32#include "Connection.hpp" // Must come before boost/serialization headers.
33#include <boost/serialization/vector.hpp>
34#include "CodePatterns/Info.hpp"
35#include "CodePatterns/Log.hpp"
36#include "CodePatterns/Observer/Notification.hpp"
37#include "ControllerChoices.hpp"
38#include "Controller/Commands/EnrollInPoolOperation.hpp"
39#include "Jobs/MPQCCommandJob.hpp"
40#include "Jobs/SystemCommandJob.hpp"
41#include "JobId.hpp"
42
43#include "FragmentScheduler.hpp"
44
45FragmentJob::ptr FragmentScheduler::NoJob(new SystemCommandJob(std::string(""), std::string(""), JobId::NoJob));
46
47/** Helper function to enforce binding of FragmentWorker to possible derived
48 * FragmentJob classes.
49 */
50void dummyInit() {
51 SystemCommandJob("/bin/false", "something", JobId::IllegalJob);
52 MPQCCommandJob("nofile", JobId::IllegalJob);
53}
54
55/** Constructor of class FragmentScheduler.
56 *
57 * We setup both acceptors to accept connections from workers and Controller.
58 *
59 * \param io_service io_service of the asynchronous communications
60 * \param workerport port to listen for worker connections
61 * \param controllerport port to listen for controller connections.
62 */
63FragmentScheduler::FragmentScheduler(boost::asio::io_service& _io_service, unsigned short workerport, unsigned short controllerport) :
64 Observer("FragmentScheduler"),
65 io_service(_io_service),
66 WorkerListener(_io_service, workerport, JobsQueue, pool,
67 boost::bind(&FragmentScheduler::sendJobToWorker, boost::ref(*this), _1, _2)),
68 ControllerListener(_io_service, controllerport, JobsQueue,
69 boost::bind(&FragmentScheduler::shutdown, boost::ref(*this))),
70 connection(_io_service),
71 sendJobOp(connection)
72{
73 Info info(__FUNCTION__);
74
75 // sign on to idle workers and present jobs
76 pool.signOn(this, WorkerPool::WorkerIdle);
77 JobsQueue.signOn(this, FragmentQueue::JobAdded);
78
79 // listen for controller
80 ControllerListener.initiateSocket();
81
82 // listen for workers
83 WorkerListener.initiateSocket();
84}
85
86FragmentScheduler::~FragmentScheduler()
87{
88 // sign off
89 pool.signOff(this, WorkerPool::WorkerIdle);
90 JobsQueue.signOff(this, FragmentQueue::JobAdded);
91}
92
93/** Handle a new worker connection.
94 *
95 * We store the given address in the pool.
96 *
97 * \param e error code if something went wrong
98 * \param conn reference with the connection
99 */
100void FragmentScheduler::WorkerListener_t::handle_Accept(const boost::system::error_code& e, connection_ptr conn)
101{
102 Info info(__FUNCTION__);
103 if (!e)
104 {
105 // Successfully accepted a new connection.
106 // read address
107 conn->async_read(address,
108 boost::bind(&FragmentScheduler::WorkerListener_t::handle_ReadAddress, this,
109 boost::asio::placeholders::error, conn));
110 }
111 else
112 {
113 // An error occurred. Log it and return. Since we are not starting a new
114 // accept operation the io_service will run out of work to do and the
115 // server will exit.
116 Exitflag = ErrorFlag;
117 ELOG(0, e.message());
118 }
119}
120
121/** Handle having received Worker's address
122 *
123 * \param e error code if something went wrong
124 * \param conn reference with the connection
125 */
126void FragmentScheduler::WorkerListener_t::handle_ReadAddress(const boost::system::error_code& e, connection_ptr conn)
127{
128 Info info(__FUNCTION__);
129 if (!e)
130 {
131 // Successfully accepted a new connection.
132 // read address
133 conn->async_read(choice,
134 boost::bind(&FragmentScheduler::WorkerListener_t::handle_ReadChoice, this,
135 boost::asio::placeholders::error, conn));
136 }
137 else
138 {
139 // An error occurred. Log it and return. Since we are not starting a new
140 // accept operation the io_service will run out of work to do and the
141 // server will exit.
142 Exitflag = ErrorFlag;
143 ELOG(0, e.message());
144 }
145}
146
147/** Controller callback function to read the choice for next operation.
148 *
149 * \param e error code if something went wrong
150 * \param conn reference with the connection
151 */
152void FragmentScheduler::WorkerListener_t::handle_ReadChoice(const boost::system::error_code& e, connection_ptr conn)
153{
154 Info info(__FUNCTION__);
155 if (!e)
156 {
157 LOG(1, "INFO: Received request for operation " << choice << ".");
158 // switch over the desired choice read previously
159 switch(choice) {
160 case NoWorkerOperation:
161 {
162 ELOG(1, "WorkerListener_t::handle_ReadChoice() - called with NoOperation.");
163 break;
164 }
165 case EnrollInPool:
166 {
167 if (pool.presentInPool(address)) {
168 ELOG(1, "INFO: worker "+toString(address)+" is already contained in pool.");
169 enum EnrollInPoolOperation::EnrollFlag flag = EnrollInPoolOperation::Fail;
170 conn->async_write(flag,
171 boost::bind(&FragmentScheduler::WorkerListener_t::handle_enrolled, this,
172 boost::asio::placeholders::error, conn));
173 } else {
174 // insert as its new worker
175 LOG(1, "INFO: Adding " << address << " to pool ...");
176 pool.addWorker(address);
177 enum EnrollInPoolOperation::EnrollFlag flag = EnrollInPoolOperation::Success;
178 conn->async_write(flag,
179 boost::bind(&FragmentScheduler::WorkerListener_t::handle_enrolled, this,
180 boost::asio::placeholders::error, conn));
181 break;
182 }
183 case SendResult:
184 {
185 if (pool.presentInPool(address)) {
186 // check whether its priority is busy_priority
187 if (pool.isWorkerBusy(address)) {
188 conn->async_read(result,
189 boost::bind(&FragmentScheduler::WorkerListener_t::handle_ReceiveResultFromWorker, this,
190 boost::asio::placeholders::error, conn));
191 } else {
192 ELOG(1, "Worker " << address << " trying to send result who is not marked as busy.");
193 conn->async_read(result,
194 boost::bind(&FragmentScheduler::WorkerListener_t::handle_RejectResultFromWorker, this,
195 boost::asio::placeholders::error, conn));
196 }
197 } else {
198 ELOG(1, "Worker " << address << " trying to send result who is not in pool.");
199 conn->async_read(result,
200 boost::bind(&FragmentScheduler::WorkerListener_t::handle_RejectResultFromWorker, this,
201 boost::asio::placeholders::error, conn));
202 }
203 break;
204 }
205 case RemoveFromPool:
206 {
207 if (pool.presentInPool(address)) {
208 // removing present worker
209 pool.removeWorker(address);
210 } else {
211 ELOG(1, "Shutting down Worker " << address << " not contained in pool.");
212 }
213 break;
214 }
215 default:
216 Exitflag = ErrorFlag;
217 ELOG(1, "WorkerListener_t::handle_ReadChoice() - called with no valid choice.");
218 break;
219 }
220 }
221 // restore NoOperation choice such that choice is not read twice
222 choice = NoWorkerOperation;
223
224 initiateSocket();
225 }
226 else
227 {
228 // An error occurred. Log it and return. Since we are not starting a new
229 // accept operation the io_service will run out of work to do and the
230 // server will exit.
231 Exitflag = ErrorFlag;
232 ELOG(0, e.message());
233 }
234}
235
236
237/** Callback function when new worker has enrolled.
238 *
239 * \param e error code if something went wrong
240 * \param conn reference with the connection
241 */
242void FragmentScheduler::WorkerListener_t::handle_enrolled(const boost::system::error_code& e, connection_ptr conn)
243{
244 Info info(__FUNCTION__);
245 if (e)
246 {
247 // An error occurred. Log it and return. Since we are not starting a new
248 // accept operation the io_service will run out of work to do and the
249 // server will exit.
250 Exitflag = ErrorFlag;
251 ELOG(0, e.message());
252 }
253}
254
255/** Callback function when result has been received.
256 *
257 * \param e error code if something went wrong
258 * \param conn reference with the connection
259 */
260void FragmentScheduler::WorkerListener_t::handle_ReceiveResultFromWorker(const boost::system::error_code& e, connection_ptr conn)
261{
262 Info info(__FUNCTION__);
263 LOG(1, "INFO: Received result for job #" << result->getId() << " ...");
264
265 // and push into queue
266 ASSERT(result->getId() != (JobId_t)JobId::NoJob,
267 "WorkerListener_t::handle_ReceiveResultFromWorker() - result received has NoJob id.");
268 ASSERT(result->getId() != (JobId_t)JobId::IllegalJob,
269 "WorkerListener_t::handle_ReceiveResultFromWorker() - result received has IllegalJob id.");
270 // place id into expected
271 if ((result->getId() != (JobId_t)JobId::NoJob) && (result->getId() != (JobId_t)JobId::IllegalJob))
272 JobsQueue.pushResult(result);
273
274 // mark as idle
275 pool.unmarkWorkerBusy(address);
276
277 // erase result
278 result.reset();
279 LOG(1, "INFO: JobsQueue has " << JobsQueue.getDoneJobs() << " results.");
280}
281
282/** Callback function when result has been received.
283 *
284 * \param e error code if something went wrong
285 * \param conn reference with the connection
286 */
287void FragmentScheduler::WorkerListener_t::handle_RejectResultFromWorker(const boost::system::error_code& e, connection_ptr conn)
288{
289 Info info(__FUNCTION__);
290 // nothing to do
291 LOG(1, "INFO: Rejecting result for job #" << result->getId() << ", placing back into queue.");
292
293 JobsQueue.resubmitJob(result->getId());
294
295 LOG(1, "INFO: JobsQueue has " << JobsQueue.getDoneJobs() << " results.");
296}
297
298
299/** Handle a new controller connection.
300 *
301 * \sa handle_ReceiveJobs()
302 * \sa handle_CheckResultState()
303 * \sa handle_SendResults()
304 *
305 * \param e error code if something went wrong
306 * \param conn reference with the connection
307 */
308void FragmentScheduler::ControllerListener_t::handle_Accept(const boost::system::error_code& e, connection_ptr conn)
309{
310 Info info(__FUNCTION__);
311 if (!e)
312 {
313 conn->async_read(choice,
314 boost::bind(&FragmentScheduler::ControllerListener_t::handle_ReadChoice, this,
315 boost::asio::placeholders::error, conn));
316 }
317 else
318 {
319 // An error occurred. Log it and return. Since we are not starting a new
320 // accept operation the io_service will run out of work to do and the
321 // server will exit.
322 Exitflag = ErrorFlag;
323 ELOG(0, e.message());
324 }
325}
326
327/** Controller callback function to read the choice for next operation.
328 *
329 * \param e error code if something went wrong
330 * \param conn reference with the connection
331 */
332void FragmentScheduler::ControllerListener_t::handle_ReadChoice(const boost::system::error_code& e, connection_ptr conn)
333{
334 Info info(__FUNCTION__);
335 if (!e)
336 {
337 bool LaunchNewAcceptor = true;
338 LOG(1, "INFO: Received request for operation " << choice << ".");
339 // switch over the desired choice read previously
340 switch(choice) {
341 case NoControllerOperation:
342 {
343 ELOG(1, "ControllerListener_t::handle_ReadChoice() - called with NoOperation.");
344 break;
345 }
346 case GetNextJobId:
347 {
348 const JobId_t nextid = globalId.getNextId();
349 LOG(1, "INFO: Sending next available job id " << nextid << " to controller ...");
350 conn->async_write(nextid,
351 boost::bind(&FragmentScheduler::ControllerListener_t::handle_GetNextJobIdState, this,
352 boost::asio::placeholders::error, conn));
353 break;
354 }
355 case ReceiveJobs:
356 {
357 // The connection::async_write() function will automatically
358 // serialize the data structure for us.
359 LOG(1, "INFO: Receiving bunch of jobs from a controller ...");
360 conn->async_read(jobs,
361 boost::bind(&FragmentScheduler::ControllerListener_t::handle_ReceiveJobs, this,
362 boost::asio::placeholders::error, conn));
363 break;
364 }
365 case CheckState:
366 {
367 // first update number
368 jobInfo[0] = JobsQueue.getPresentJobs();
369 jobInfo[1] = JobsQueue.getDoneJobs();
370 // now we accept connections to check for state of calculations
371 LOG(1, "INFO: Sending state that "+toString(jobInfo[0])+" jobs are present and "+toString(jobInfo[1])+" jobs are done to controller ...");
372 conn->async_write(jobInfo,
373 boost::bind(&FragmentScheduler::ControllerListener_t::handle_CheckResultState, this,
374 boost::asio::placeholders::error, conn));
375 break;
376 }
377 case SendResults:
378 {
379 const std::vector<FragmentResult::ptr> results = JobsQueue.getAllResults();
380 // ... or we give the results
381 LOG(1, "INFO: Sending "+toString(results.size())+" results to controller ...");
382 conn->async_write(results,
383 boost::bind(&FragmentScheduler::ControllerListener_t::handle_SendResults, this,
384 boost::asio::placeholders::error, conn));
385 break;
386 }
387 case ShutdownControllerSocket:
388 {
389 LOG(1, "INFO: Received shutdown from controller ...");
390 // only allow for shutdown when there are no more jobs in the queue
391 if (!JobsQueue.isJobPresent()) {
392 LaunchNewAcceptor = false;
393 } else {
394 ELOG(2, "There are still jobs waiting in the queue.");
395 }
396 break;
397 }
398 default:
399 Exitflag = ErrorFlag;
400 ELOG(1, "ControllerListener_t::handle_ReadChoice() - called with no valid choice.");
401 break;
402 }
403 // restore NoControllerOperation choice such that choice is not read twice
404 choice = NoControllerOperation;
405
406 if (LaunchNewAcceptor) {
407 LOG(1, "Launching new acceptor on socket.");
408 // Start an accept operation for a new Connection.
409 initiateSocket();
410 } else {
411 // we shutdown? Hence, also shutdown controller
412 shutdownAllSockets();
413 }
414 }
415 else
416 {
417 // An error occurred. Log it and return. Since we are not starting a new
418 // accept operation the io_service will run out of work to do and the
419 // server will exit.
420 Exitflag = ErrorFlag;
421 ELOG(0, e.message());
422 }
423}
424
425/** Controller callback function when job has been sent.
426 *
427 * We check here whether the worker socket is accepting, if there
428 * have been no jobs we re-activate it, as it is shut down after
429 * last job.
430 *
431 * \param e error code if something went wrong
432 * \param conn reference with the connection
433 */
434void FragmentScheduler::ControllerListener_t::handle_ReceiveJobs(const boost::system::error_code& e, connection_ptr conn)
435{
436 Info info(__FUNCTION__);
437 // jobs are received, hence place in JobsQueue
438 if (!jobs.empty()) {
439 LOG(1, "INFO: Pushing " << jobs.size() << " jobs into queue.");
440 JobsQueue.pushJobs(jobs);
441 }
442 jobs.clear();
443}
444
445/** Controller callback function when checking on state of results.
446 *
447 * \param e error code if something went wrong
448 * \param conn reference with the connection
449 */
450void FragmentScheduler::ControllerListener_t::handle_CheckResultState(const boost::system::error_code& e, connection_ptr conn)
451{
452 Info info(__FUNCTION__);
453 // do nothing
454 LOG(1, "INFO: Sent that " << jobInfo << " jobs are (scheduled, done).");
455}
456
457/** Controller callback function when checking on state of results.
458 *
459 * \param e error code if something went wrong
460 * \param conn reference with the connection
461 */
462void FragmentScheduler::ControllerListener_t::handle_GetNextJobIdState(const boost::system::error_code& e, connection_ptr conn)
463{
464 Info info(__FUNCTION__);
465 // do nothing
466 LOG(1, "INFO: Sent next available job id.");
467}
468
469/** Controller callback function when result has been received.
470 *
471 * \param e error code if something went wrong
472 * \param conn reference with the connection
473 */
474void FragmentScheduler::ControllerListener_t::handle_SendResults(const boost::system::error_code& e, connection_ptr conn)
475{
476 Info info(__FUNCTION__);
477 // do nothing
478 LOG(1, "INFO: Results have been sent.");
479}
480
481
482/** Helper function to send a job to worker.
483 *
484 * Note that we do not set the worker as busy. We simply send it the job.
485 *
486 * @param address address of worker
487 * @param job job to send
488 */
489void FragmentScheduler::sendJobToWorker(const WorkerAddress &address, FragmentJob::ptr &job)
490{
491 ASSERT( pool.isWorkerBusy(address),
492 "FragmentScheduler::sendJobToWorker() - Worker "+toString(address)+" is not marked as busy.");
493 LOG(1, "INFO: Sending job " << job->getId() << " to worker " << address << ".");
494 sendJobOp.setJob(job);
495 sendJobOp(address.host, address.service);
496}
497
498/** Helper function to shutdown a single worker.
499 *
500 * We send NoJob to indicate shutdown
501 *
502 * @param address of worker to shutdown
503 */
504void FragmentScheduler::shutdownWorker(const WorkerAddress &address)
505{
506 LOG(3, "DEBUG: Shutting down worker " << address << "...");
507 sendJobToWorker(address, NoJob);
508}
509
510/** Sends shutdown to all current workers in the pool.
511 *
512 */
513void FragmentScheduler::removeAllWorkers()
514{
515 LOG(2, "INFO: Shutting down workers ...");
516
517 // give all workers shutdown signal
518 while (pool.presentIdleWorkers()) {
519 const WorkerAddress address = pool.getNextIdleWorker();
520 shutdownWorker(address);
521 }
522}
523
524/** Helper function to shutdown the server properly.
525 *
526 * \todo one should idle here until all workers have returned from
527 * calculating stuff (or workers need to still listen while the are
528 * calculating which is probably better).
529 *
530 */
531void FragmentScheduler::shutdown()
532{
533 LOG(1, "INFO: Shutting all down ...");
534
535 /// Remove all workers
536 removeAllWorkers();
537
538 /// close the worker listener's socket
539 WorkerListener.closeSocket();
540
541 /// close the controller listener's socket
542 ControllerListener.closeSocket();
543
544 /// finally, stop the io_service
545 io_service.stop();
546}
547
548/** Internal helper to send the next available job to the next idle worker.
549 *
550 */
551void FragmentScheduler::sendAvailableJobToNextIdleWorker()
552{
553 const WorkerAddress address = pool.getNextIdleWorker();
554 FragmentJob::ptr job = JobsQueue.popJob();
555 sendJobToWorker(address, job);
556}
557
558void FragmentScheduler::update(Observable *publisher)
559{
560 ASSERT(0, "FragmentScheduler::update() - we are not signed on for global updates.");
561}
562
563void FragmentScheduler::recieveNotification(Observable *publisher, Notification_ptr notification)
564{
565 // we have an idle worker
566 if ((publisher == &pool) && (notification->getChannelNo() == WorkerPool::WorkerIdle)) {
567 LOG(1, "INFO: We are notified of an idle worker.");
568 // are jobs available?
569 if (JobsQueue.isJobPresent()) {
570 sendAvailableJobToNextIdleWorker();
571 }
572 }
573
574 // we have new jobs
575 if ((publisher == &JobsQueue) && (notification->getChannelNo() == FragmentQueue::JobAdded)) {
576 LOG(1, "INFO: We are notified of a new job.");
577 // check for idle workers
578 if (pool.presentIdleWorkers()) {
579 sendAvailableJobToNextIdleWorker();
580 }
581 }
582}
583
584void FragmentScheduler::subjectKilled(Observable *publisher)
585{}
Note: See TracBrowser for help on using the repository browser.