[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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| 4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[97ebf8] | 8 | /*
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| 9 | * AddEmptyBoundaryAction.cpp
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| 10 | *
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| 11 | * Created on: May 8, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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[112b09] | 21 |
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[97ebf8] | 22 | #include "atom.hpp"
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[ad011c] | 23 | #include "CodePatterns/Log.hpp"
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[3bd460a] | 24 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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[57f243] | 25 | #include "LinearAlgebra/Vector.hpp"
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[97ebf8] | 26 | #include "World.hpp"
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| 27 |
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| 28 | #include <iostream>
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| 29 | #include <string>
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| 30 | #include <vector>
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| 31 |
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[1fd675] | 32 | #include "Actions/WorldAction/AddEmptyBoundaryAction.hpp"
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[afd9f3] | 33 |
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[ce7fdc] | 34 | using namespace MoleCuilder;
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| 35 |
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[1fd675] | 36 | // and construct the stuff
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| 37 | #include "AddEmptyBoundaryAction.def"
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| 38 | #include "Action_impl_pre.hpp"
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| 39 | /** =========== define the function ====================== */
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[afd9f3] | 40 | Action::state_ptr WorldAddEmptyBoundaryAction::performCall() {
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[97ebf8] | 41 | Vector Min;
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| 42 | Vector Max;
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| 43 | int j=0;
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| 44 |
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[1fd675] | 45 | // obtain information
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| 46 | getParametersfromValueStorage();
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[afd9f3] | 47 |
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| 48 | // get maximum and minimum
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| 49 | vector<atom *> AllAtoms = World::getInstance().getAllAtoms();
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| 50 | ASSERT(AllAtoms.size() > 0, "There must be atoms present for AddingEmptyBoundary.");
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| 51 | vector<atom *>::iterator AtomRunner = AllAtoms.begin();
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[d74077] | 52 | Min = (*AtomRunner)->getPosition();
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| 53 | Max = (*AtomRunner)->getPosition();
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[afd9f3] | 54 | for (; AtomRunner != AllAtoms.end(); ++AtomRunner) {
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[97ebf8] | 55 | for (int i=0;i<NDIM;i++) {
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[d74077] | 56 | if ((*AtomRunner)->at(i) > Max[i])
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| 57 | Max[i] = (*AtomRunner)->at(i);
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| 58 | if ((*AtomRunner)->at(i) < Min[i])
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| 59 | Min[i] = (*AtomRunner)->at(i);
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[97ebf8] | 60 | }
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| 61 | }
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[afd9f3] | 62 | // set new box size
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| 63 | double * const cell_size = new double[6];
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| 64 | for (j=0;j<6;j++)
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| 65 | cell_size[j] = 0.;
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| 66 | j=-1;
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| 67 | for (int i=0;i<NDIM;i++) {
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| 68 | j += i+1;
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[1fd675] | 69 | cell_size[j] = (Max[i]-Min[i]+2.*params.boundary[i]);
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[afd9f3] | 70 | }
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| 71 | World::getInstance().setDomain(cell_size);
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| 72 | delete[] cell_size;
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| 73 | // translate all atoms, such that Min is aty (0,0,0)
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| 74 | AtomRunner = AllAtoms.begin();
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| 75 | for (; AtomRunner != AllAtoms.end(); ++AtomRunner)
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[1fd675] | 76 | *(*AtomRunner) -= Min - params.boundary;
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[3bd460a] | 77 |
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| 78 | // give final box size
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| 79 | LOG(0, "Box domain is now " << World::getInstance().getDomain().getM());
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| 80 |
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[afd9f3] | 81 | return Action::success;
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[97ebf8] | 82 | }
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| 83 |
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| 84 | Action::state_ptr WorldAddEmptyBoundaryAction::performUndo(Action::state_ptr _state) {
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| 85 | // ParserLoadXyzState *state = assert_cast<ParserLoadXyzState*>(_state.get());
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| 86 |
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| 87 | return Action::failure;
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| 88 | // string newName = state->mol->getName();
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| 89 | // state->mol->setName(state->lastName);
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| 90 | //
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| 91 | // return Action::state_ptr(new ParserLoadXyzState(state->mol,newName));
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| 92 | }
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| 93 |
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| 94 | Action::state_ptr WorldAddEmptyBoundaryAction::performRedo(Action::state_ptr _state){
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| 95 | return Action::failure;
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| 96 | }
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| 97 |
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| 98 | bool WorldAddEmptyBoundaryAction::canUndo() {
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| 99 | return false;
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| 100 | }
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| 101 |
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| 102 | bool WorldAddEmptyBoundaryAction::shouldUndo() {
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| 103 | return false;
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| 104 | }
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[1fd675] | 105 | /** =========== end of function ====================== */
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