source: src/Actions/Makefile.am@ 0afe00

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 0afe00 was 39986b, checked in by Frederik Heber <heber@…>, 12 years ago

Added new MakroAction MolecularDynamicsAction.

  • this resides within fragmentation, as we perform the four steps ...
    • verlet-integration
    • fragmentation
    • fragmentation-automation
    • analyse-fragmentation-results ... for a given number of times, using ActionSequence::loop with steps.
  • outputs after every time integration step, controlled via DoOutput option.
  • action only instantiated if HAVE_JOBMARKET.
  • Property mode set to 100644
File size: 27.6 KB
Line 
1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
4ACTIONSSOURCE = \
5 Actions/Action.cpp \
6 Actions/ActionHistory.cpp \
7 Actions/ActionRegistry.cpp \
8 Actions/ActionSequence.cpp \
9 Actions/ActionTrait.cpp \
10 Actions/ErrorAction.cpp \
11 Actions/MakroAction.cpp \
12 Actions/ManipulateAtomsProcess.cpp \
13 Actions/MethodAction.cpp \
14 Actions/OptionRegistry.cpp \
15 Actions/OptionTrait.cpp \
16 Actions/Process.cpp \
17 Actions/UndoRedoHelpers.cpp \
18 Actions/Values.cpp
19
20ACTIONSHEADER = \
21 Actions/Action.hpp \
22 Actions/ActionExceptions.hpp \
23 Actions/Action_impl_header.hpp \
24 Actions/Action_impl_pre.hpp \
25 Actions/Action_impl_undef.hpp \
26 Actions/ActionHistory.hpp \
27 Actions/ActionRegistry.hpp \
28 Actions/ActionSequence.hpp \
29 Actions/ActionTrait.hpp \
30 Actions/ActionTraits.hpp \
31 Actions/AtomsCalculation.hpp \
32 Actions/AtomsCalculation_impl.hpp \
33 Actions/Calculation.hpp \
34 Actions/Calculation_impl.hpp \
35 Actions/ErrorAction.hpp \
36 Actions/GlobalListOfActions.hpp \
37 Actions/MakroAction.hpp \
38 Actions/MakroAction_impl_header.hpp \
39 Actions/MakroAction_impl_pre.hpp \
40 Actions/ManipulateAtomsProcess.hpp \
41 Actions/MethodAction.hpp \
42 Actions/OptionRegistry.hpp \
43 Actions/OptionTrait.hpp \
44 Actions/Process.hpp \
45 Actions/Reaction.hpp \
46 Actions/Reaction_impl.hpp \
47 Actions/Reaction_impl_header.hpp \
48 Actions/Reaction_impl_pre.hpp \
49 Actions/UndoRedoHelpers.hpp \
50 Actions/Values.hpp
51
52ACTIONPROTOTYPESSOURCE = \
53 ${ANALYSISACTIONSOURCE} \
54 ${ATOMACTIONSOURCE} \
55 ${BONDACTIONSOURCE} \
56 ${CMDACTIONSOURCE} \
57 ${FILLACTIONSOURCE} \
58 ${FRAGMENTATIONACTIONSOURCE} \
59 ${GRAPHACTIONSOURCE} \
60 ${MOLECULEACTIONSOURCE} \
61 ${PARSERACTIONSOURCE} \
62 ${RANDONNUMBERSSOURCE} \
63 ${SELECTIONATOMACTIONSOURCE} \
64 ${SELECTIONMOLECULEACTIONSOURCE} \
65 ${SELECTIONSHAPEACTIONSOURCE} \
66 ${SHAPEACTIONSOURCE} \
67 ${TESSELATIONACTIONSOURCE} \
68 $(UNDOACTIONSOURCE) \
69 ${WORLDACTIONSOURCE}
70
71ACTIONPROTOTYPESHEADER = \
72 ${ANALYSISACTIONHEADER} \
73 ${ATOMACTIONHEADER} \
74 ${BONDACTIONHEADER} \
75 ${CMDACTIONHEADER} \
76 ${FILLACTIONHEADER} \
77 ${FRAGMENTATIONACTIONHEADER} \
78 ${GRAPHACTIONHEADER} \
79 ${MOLECULEACTIONHEADER} \
80 ${PARSERACTIONHEADER} \
81 ${RANDONNUMBERSHEADER} \
82 ${SELECTIONATOMACTIONHEADER} \
83 ${SELECTIONMOLECULEACTIONHEADER} \
84 ${SELECTIONSHAPEACTIONHEADER} \
85 ${SHAPEACTIONHEADER} \
86 ${TESSELATIONACTIONHEADER} \
87 $(UNDOACTIONHEADER) \
88 ${WORLDACTIONHEADER}
89
90ACTIONPROTOTYPESDEFS = \
91 ${ANALYSISACTIONDEFS} \
92 ${ATOMACTIONDEFS} \
93 ${BONDACTIONDEFS} \
94 ${CMDACTIONDEFS} \
95 ${FILLACTIONDEFS} \
96 ${FRAGMENTATIONACTIONDEFS} \
97 ${GRAPHACTIONDEFS} \
98 ${MOLECULEACTIONDEFS} \
99 ${PARSERACTIONDEFS} \
100 ${RANDONNUMBERSDEFS} \
101 ${SELECTIONATOMACTIONDEFS} \
102 ${SELECTIONMOLECULEACTIONDEFS} \
103 ${SELECTIONSHAPEACTIONDEFS} \
104 ${SHAPEACTIONDEFS} \
105 ${TESSELATIONACTIONDEFS} \
106 $(UNDOACTIONDEFS) \
107 ${WORLDACTIONDEFS}
108
109ANALYSISACTIONSOURCE = \
110 Actions/AnalysisAction/CalculateBoundingBoxAction.cpp \
111 Actions/AnalysisAction/CalculateCellVolumeAction.cpp \
112 Actions/AnalysisAction/CalculateMolarMassAction.cpp \
113 Actions/AnalysisAction/DipoleAngularCorrelationAction.cpp \
114 Actions/AnalysisAction/DipoleCorrelationAction.cpp \
115 Actions/AnalysisAction/MolecularVolumeAction.cpp \
116 Actions/AnalysisAction/PairCorrelationAction.cpp \
117 Actions/AnalysisAction/PointCorrelationAction.cpp \
118 Actions/AnalysisAction/PrincipalAxisSystemAction.cpp \
119 Actions/AnalysisAction/SurfaceCorrelationAction.cpp
120ANALYSISACTIONHEADER = \
121 Actions/AnalysisAction/CalculateBoundingBoxAction.hpp \
122 Actions/AnalysisAction/CalculateCellVolumeAction.hpp \
123 Actions/AnalysisAction/CalculateMolarMassAction.hpp \
124 Actions/AnalysisAction/DipoleAngularCorrelationAction.hpp \
125 Actions/AnalysisAction/DipoleCorrelationAction.hpp \
126 Actions/AnalysisAction/MolecularVolumeAction.hpp \
127 Actions/AnalysisAction/PairCorrelationAction.hpp \
128 Actions/AnalysisAction/PointCorrelationAction.hpp \
129 Actions/AnalysisAction/PrincipalAxisSystemAction.hpp \
130 Actions/AnalysisAction/SurfaceCorrelationAction.hpp
131ANALYSISACTIONDEFS = \
132 Actions/AnalysisAction/CalculateBoundingBoxAction.def \
133 Actions/AnalysisAction/CalculateCellVolumeAction.def \
134 Actions/AnalysisAction/CalculateMolarMassAction.def \
135 Actions/AnalysisAction/DipoleAngularCorrelationAction.def \
136 Actions/AnalysisAction/DipoleCorrelationAction.def \
137 Actions/AnalysisAction/MolecularVolumeAction.def \
138 Actions/AnalysisAction/PairCorrelationAction.def \
139 Actions/AnalysisAction/PointCorrelationAction.def \
140 Actions/AnalysisAction/PrincipalAxisSystemAction.def \
141 Actions/AnalysisAction/SurfaceCorrelationAction.def
142
143ATOMACTIONSOURCE = \
144 Actions/AtomAction/AddAction.cpp \
145 Actions/AtomAction/ChangeElementAction.cpp \
146 Actions/AtomAction/RemoveAction.cpp \
147 Actions/AtomAction/RotateAroundOriginByAngleAction.cpp \
148 Actions/AtomAction/SaveSelectedAtomsAction.cpp \
149 Actions/AtomAction/TranslateAction.cpp
150ATOMACTIONHEADER = \
151 Actions/AtomAction/AddAction.hpp \
152 Actions/AtomAction/ChangeElementAction.hpp \
153 Actions/AtomAction/RemoveAction.hpp \
154 Actions/AtomAction/RotateAroundOriginByAngleAction.hpp \
155 Actions/AtomAction/SaveSelectedAtomsAction.hpp \
156 Actions/AtomAction/TranslateAction.hpp
157ATOMACTIONDEFS = \
158 Actions/AtomAction/AddAction.def \
159 Actions/AtomAction/ChangeElementAction.def \
160 Actions/AtomAction/RemoveAction.def \
161 Actions/AtomAction/RotateAroundOriginByAngleAction.def \
162 Actions/AtomAction/SaveSelectedAtomsAction.def \
163 Actions/AtomAction/TranslateAction.def
164
165BONDACTIONSOURCE = \
166 Actions/BondAction/BondAddAction.cpp \
167 Actions/BondAction/BondRemoveAction.cpp
168BONDACTIONHEADER = \
169 Actions/BondAction/BondAddAction.hpp \
170 Actions/BondAction/BondRemoveAction.hpp
171BONDACTIONDEFS = \
172 Actions/BondAction/BondAddAction.def \
173 Actions/BondAction/BondRemoveAction.def
174
175CMDACTIONSOURCE = \
176 Actions/CommandAction/BondLengthTableAction.cpp \
177 Actions/CommandAction/ElementDbAction.cpp \
178 Actions/CommandAction/FastParsingAction.cpp \
179 Actions/CommandAction/HelpAction.cpp \
180 Actions/CommandAction/HelpRedistributeAction.cpp \
181 Actions/CommandAction/VerboseAction.cpp \
182 Actions/CommandAction/VersionAction.cpp \
183 Actions/CommandAction/WarrantyAction.cpp
184CMDACTIONHEADER = \
185 Actions/CommandAction/BondLengthTableAction.hpp \
186 Actions/CommandAction/ElementDbAction.hpp \
187 Actions/CommandAction/FastParsingAction.hpp \
188 Actions/CommandAction/HelpAction.hpp \
189 Actions/CommandAction/HelpRedistributeAction.hpp \
190 Actions/CommandAction/VerboseAction.hpp \
191 Actions/CommandAction/VersionAction.hpp \
192 Actions/CommandAction/WarrantyAction.hpp
193CMDACTIONDEFS = \
194 Actions/CommandAction/BondLengthTableAction.def \
195 Actions/CommandAction/ElementDbAction.def \
196 Actions/CommandAction/FastParsingAction.def \
197 Actions/CommandAction/HelpAction.def \
198 Actions/CommandAction/HelpRedistributeAction.def \
199 Actions/CommandAction/VerboseAction.def \
200 Actions/CommandAction/VersionAction.def \
201 Actions/CommandAction/WarrantyAction.def
202
203FILLACTIONSOURCE = \
204 Actions/FillAction/FillRegularGridAction.cpp \
205 Actions/FillAction/FillSurfaceAction.cpp
206FILLACTIONHEADER = \
207 Actions/FillAction/FillRegularGridAction.hpp \
208 Actions/FillAction/FillSurfaceAction.hpp
209FILLACTIONDEFS = \
210 Actions/FillAction/FillRegularGridAction.def \
211 Actions/FillAction/FillSurfaceAction.def
212
213
214FRAGMENTATIONACTIONSOURCE = \
215 Actions/FragmentationAction/FragmentationAction.cpp \
216 Actions/FragmentationAction/AnalyseFragmentationResultsAction.cpp \
217 Actions/FragmentationAction/StoreSaturatedFragmentAction.cpp
218FRAGMENTATIONACTIONHEADER = \
219 Actions/FragmentationAction/FragmentationAction.hpp \
220 Actions/FragmentationAction/AnalyseFragmentationResultsAction.hpp \
221 Actions/FragmentationAction/StoreSaturatedFragmentAction.hpp
222FRAGMENTATIONACTIONDEFS = \
223 Actions/FragmentationAction/FragmentationAction.def \
224 Actions/FragmentationAction/AnalyseFragmentationResultsAction.def \
225 Actions/FragmentationAction/StoreSaturatedFragmentAction.def
226
227if CONDJOBMARKET
228FRAGMENTATIONACTIONSOURCE += \
229 Actions/FragmentationAction/FragmentationAutomationAction.cpp \
230 Actions/FragmentationAction/MolecularDynamicsAction.cpp \
231 Actions/FragmentationAction/ParseFragmentJobsAction.cpp
232FRAGMENTATIONACTIONHEADER += \
233 Actions/FragmentationAction/FragmentationAutomationAction.hpp \
234 Actions/FragmentationAction/MolecularDynamicsAction.hpp \
235 Actions/FragmentationAction/ParseFragmentJobsAction.hpp
236FRAGMENTATIONACTIONDEFS += \
237 Actions/FragmentationAction/FragmentationAutomationAction.def \
238 Actions/FragmentationAction/MolecularDynamicsAction.def \
239 Actions/FragmentationAction/ParseFragmentJobsAction.def
240endif
241
242if CONDLEVMAR
243FRAGMENTATIONACTIONSOURCE += \
244 Actions/FragmentationAction/FitPotentialAction.cpp
245FRAGMENTATIONACTIONHEADER += \
246 Actions/FragmentationAction/FitPotentialAction.hpp
247FRAGMENTATIONACTIONDEFS += \
248 Actions/FragmentationAction/FitPotentialAction.def
249endif
250
251
252GRAPHACTIONSOURCE = \
253 Actions/GraphAction/CreateAdjacencyAction.cpp \
254 Actions/GraphAction/DepthFirstSearchAction.cpp \
255 Actions/GraphAction/DestroyAdjacencyAction.cpp \
256 Actions/GraphAction/SubgraphDissectionAction.cpp \
257 Actions/GraphAction/UpdateMoleculesAction.cpp
258GRAPHACTIONHEADER = \
259 Actions/GraphAction/CreateAdjacencyAction.hpp \
260 Actions/GraphAction/DepthFirstSearchAction.hpp \
261 Actions/GraphAction/DestroyAdjacencyAction.hpp \
262 Actions/GraphAction/SubgraphDissectionAction.hpp \
263 Actions/GraphAction/UpdateMoleculesAction.hpp
264GRAPHACTIONDEFS = \
265 Actions/GraphAction/CreateAdjacencyAction.def \
266 Actions/GraphAction/DepthFirstSearchAction.def \
267 Actions/GraphAction/DestroyAdjacencyAction.def \
268 Actions/GraphAction/SubgraphDissectionAction.def \
269 Actions/GraphAction/UpdateMoleculesAction.def
270
271MOLECULEACTIONSOURCE = \
272 Actions/MoleculeAction/BondFileAction.cpp \
273 Actions/MoleculeAction/ChangeBondAngleAction.cpp \
274 Actions/MoleculeAction/ChangeNameAction.cpp \
275 Actions/MoleculeAction/CopyAction.cpp \
276 Actions/MoleculeAction/FillWithMoleculeAction.cpp \
277 Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp \
278 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp \
279 Actions/MoleculeAction/LoadAction.cpp \
280 Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp \
281 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp \
282 Actions/MoleculeAction/SaveSelectedMoleculesAction.cpp \
283 Actions/MoleculeAction/SaveAdjacencyAction.cpp \
284 Actions/MoleculeAction/SaveBondsAction.cpp \
285 Actions/MoleculeAction/SaveTemperatureAction.cpp \
286 Actions/MoleculeAction/StretchBondAction.cpp \
287 Actions/MoleculeAction/SuspendInWaterAction.cpp \
288 Actions/MoleculeAction/VerletIntegrationAction.cpp
289MOLECULEACTIONHEADER = \
290 Actions/MoleculeAction/BondFileAction.hpp \
291 Actions/MoleculeAction/ChangeBondAngleAction.hpp \
292 Actions/MoleculeAction/ChangeNameAction.hpp \
293 Actions/MoleculeAction/CopyAction.hpp \
294 Actions/MoleculeAction/FillWithMoleculeAction.hpp \
295 Actions/MoleculeAction/FillVoidWithMoleculeAction.hpp \
296 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp \
297 Actions/MoleculeAction/LoadAction.hpp \
298 Actions/MoleculeAction/RotateAroundSelfByAngleAction.hpp \
299 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp \
300 Actions/MoleculeAction/SaveSelectedMoleculesAction.hpp \
301 Actions/MoleculeAction/SaveAdjacencyAction.hpp \
302 Actions/MoleculeAction/SaveBondsAction.hpp \
303 Actions/MoleculeAction/SaveTemperatureAction.hpp \
304 Actions/MoleculeAction/StretchBondAction.hpp \
305 Actions/MoleculeAction/SuspendInWaterAction.hpp \
306 Actions/MoleculeAction/VerletIntegrationAction.hpp
307MOLECULEACTIONDEFS = \
308 Actions/MoleculeAction/BondFileAction.def \
309 Actions/MoleculeAction/ChangeBondAngleAction.def \
310 Actions/MoleculeAction/ChangeNameAction.def \
311 Actions/MoleculeAction/CopyAction.def \
312 Actions/MoleculeAction/FillWithMoleculeAction.def \
313 Actions/MoleculeAction/FillVoidWithMoleculeAction.def \
314 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.def \
315 Actions/MoleculeAction/LoadAction.def \
316 Actions/MoleculeAction/RotateAroundSelfByAngleAction.def \
317 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.def \
318 Actions/MoleculeAction/SaveSelectedMoleculesAction.def \
319 Actions/MoleculeAction/SaveAdjacencyAction.def \
320 Actions/MoleculeAction/SaveBondsAction.def \
321 Actions/MoleculeAction/SaveTemperatureAction.def \
322 Actions/MoleculeAction/StretchBondAction.def \
323 Actions/MoleculeAction/SuspendInWaterAction.def \
324 Actions/MoleculeAction/VerletIntegrationAction.def
325
326PARSERACTIONSOURCE = \
327 Actions/ParserAction/ParseTremoloPotentialsAction.cpp \
328 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.cpp \
329 Actions/ParserAction/SetParserParametersAction.cpp \
330 Actions/ParserAction/SetOutputFormatsAction.cpp \
331 Actions/ParserAction/SetTremoloAtomdataAction.cpp
332PARSERACTIONHEADER = \
333 Actions/ParserAction/ParseTremoloPotentialsAction.hpp \
334 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.hpp \
335 Actions/ParserAction/SetParserParametersAction.hpp \
336 Actions/ParserAction/SetOutputFormatsAction.hpp \
337 Actions/ParserAction/SetTremoloAtomdataAction.hpp
338PARSERACTIONDEFS = \
339 Actions/ParserAction/ParseTremoloPotentialsAction.def \
340 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.def \
341 Actions/ParserAction/SetParserParametersAction.def \
342 Actions/ParserAction/SetOutputFormatsAction.def \
343 Actions/ParserAction/SetTremoloAtomdataAction.def
344
345RANDONNUMBERSSOURCE =\
346 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.cpp \
347 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp
348RANDONNUMBERSHEADER =\
349 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.hpp \
350 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.hpp
351RANDONNUMBERSDEFS =\
352 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.def \
353 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.def
354
355SELECTIONATOMACTIONSOURCE = \
356 Actions/SelectionAction/Atoms/AllAtomsAction.cpp \
357 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.cpp \
358 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.cpp \
359 Actions/SelectionAction/Atoms/AtomByElementAction.cpp \
360 Actions/SelectionAction/Atoms/AtomByIdAction.cpp \
361 Actions/SelectionAction/Atoms/AtomByOrderAction.cpp \
362 Actions/SelectionAction/Atoms/ClearAllAtomsAction.cpp \
363 Actions/SelectionAction/Atoms/InvertAtomsAction.cpp \
364 Actions/SelectionAction/Atoms/NotAllAtomsAction.cpp \
365 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.cpp \
366 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.cpp \
367 Actions/SelectionAction/Atoms/NotAtomByElementAction.cpp \
368 Actions/SelectionAction/Atoms/NotAtomByIdAction.cpp \
369 Actions/SelectionAction/Atoms/NotAtomByOrderAction.cpp
370SELECTIONATOMACTIONHEADER = \
371 Actions/SelectionAction/Atoms/AllAtomsAction.hpp \
372 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.hpp \
373 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.hpp \
374 Actions/SelectionAction/Atoms/AtomByElementAction.hpp \
375 Actions/SelectionAction/Atoms/AtomByIdAction.hpp \
376 Actions/SelectionAction/Atoms/AtomByOrderAction.hpp \
377 Actions/SelectionAction/Atoms/ClearAllAtomsAction.hpp \
378 Actions/SelectionAction/Atoms/InvertAtomsAction.hpp \
379 Actions/SelectionAction/Atoms/NotAllAtomsAction.hpp \
380 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.hpp \
381 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.hpp \
382 Actions/SelectionAction/Atoms/NotAtomByElementAction.hpp \
383 Actions/SelectionAction/Atoms/NotAtomByIdAction.hpp \
384 Actions/SelectionAction/Atoms/NotAtomByOrderAction.hpp
385SELECTIONATOMACTIONDEFS = \
386 Actions/SelectionAction/Atoms/AllAtomsAction.def \
387 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.def \
388 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.def \
389 Actions/SelectionAction/Atoms/AtomByElementAction.def \
390 Actions/SelectionAction/Atoms/AtomByIdAction.def \
391 Actions/SelectionAction/Atoms/AtomByOrderAction.def \
392 Actions/SelectionAction/Atoms/ClearAllAtomsAction.def \
393 Actions/SelectionAction/Atoms/InvertAtomsAction.def \
394 Actions/SelectionAction/Atoms/NotAllAtomsAction.def \
395 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.def \
396 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.def \
397 Actions/SelectionAction/Atoms/NotAtomByElementAction.def \
398 Actions/SelectionAction/Atoms/NotAtomByIdAction.def \
399 Actions/SelectionAction/Atoms/NotAtomByOrderAction.def
400
401SELECTIONMOLECULEACTIONSOURCE = \
402 Actions/SelectionAction/Molecules/AllMoleculesAction.cpp \
403 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.cpp \
404 Actions/SelectionAction/Molecules/InvertMoleculesAction.cpp \
405 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.cpp \
406 Actions/SelectionAction/Molecules/MoleculeByIdAction.cpp \
407 Actions/SelectionAction/Molecules/MoleculeByNameAction.cpp \
408 Actions/SelectionAction/Molecules/MoleculeByOrderAction.cpp \
409 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.cpp \
410 Actions/SelectionAction/Molecules/NotAllMoleculesAction.cpp \
411 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.cpp \
412 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.cpp \
413 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.cpp \
414 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.cpp \
415 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.cpp
416SELECTIONMOLECULEACTIONHEADER = \
417 Actions/SelectionAction/Molecules/AllMoleculesAction.hpp \
418 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.hpp \
419 Actions/SelectionAction/Molecules/InvertMoleculesAction.hpp \
420 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.hpp \
421 Actions/SelectionAction/Molecules/MoleculeByIdAction.hpp \
422 Actions/SelectionAction/Molecules/MoleculeByNameAction.hpp \
423 Actions/SelectionAction/Molecules/MoleculeByOrderAction.hpp \
424 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.hpp \
425 Actions/SelectionAction/Molecules/NotAllMoleculesAction.hpp \
426 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.hpp \
427 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.hpp \
428 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.hpp \
429 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.hpp \
430 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.hpp
431SELECTIONMOLECULEACTIONDEFS = \
432 Actions/SelectionAction/Molecules/AllMoleculesAction.def \
433 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.def \
434 Actions/SelectionAction/Molecules/InvertMoleculesAction.def \
435 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.def \
436 Actions/SelectionAction/Molecules/MoleculeByIdAction.def \
437 Actions/SelectionAction/Molecules/MoleculeByNameAction.def \
438 Actions/SelectionAction/Molecules/MoleculeByOrderAction.def \
439 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.def \
440 Actions/SelectionAction/Molecules/NotAllMoleculesAction.def \
441 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.def \
442 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.def \
443 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.def \
444 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.def \
445 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.def
446
447SELECTIONSHAPEACTIONSOURCE = \
448 Actions/SelectionAction/Shapes/AllShapesAction.cpp \
449 Actions/SelectionAction/Shapes/ShapeByNameAction.cpp \
450 Actions/SelectionAction/Shapes/NotAllShapesAction.cpp \
451 Actions/SelectionAction/Shapes/NotShapeByNameAction.cpp
452SELECTIONSHAPEACTIONHEADER = \
453 Actions/SelectionAction/Shapes/AllShapesAction.hpp \
454 Actions/SelectionAction/Shapes/ShapeByNameAction.hpp \
455 Actions/SelectionAction/Shapes/NotAllShapesAction.hpp \
456 Actions/SelectionAction/Shapes/NotShapeByNameAction.hpp
457SELECTIONSHAPEACTIONDEFS = \
458 Actions/SelectionAction/Shapes/AllShapesAction.def \
459 Actions/SelectionAction/Shapes/ShapeByNameAction.def \
460 Actions/SelectionAction/Shapes/NotAllShapesAction.def \
461 Actions/SelectionAction/Shapes/NotShapeByNameAction.def
462
463SHAPEACTIONSOURCE = \
464 Actions/ShapeAction/CombineShapesAction.cpp \
465 Actions/ShapeAction/CreateShapeAction.cpp \
466 Actions/ShapeAction/RemoveShapeAction.cpp \
467 Actions/ShapeAction/RotateShapeAction.cpp \
468 Actions/ShapeAction/StretchShapeAction.cpp \
469 Actions/ShapeAction/TranslateShapeAction.cpp
470SHAPEACTIONHEADER = \
471 Actions/ShapeAction/CombineShapesAction.hpp \
472 Actions/ShapeAction/CreateShapeAction.hpp \
473 Actions/ShapeAction/RemoveShapeAction.hpp \
474 Actions/ShapeAction/RotateShapeAction.hpp \
475 Actions/ShapeAction/StretchShapeAction.hpp \
476 Actions/ShapeAction/TranslateShapeAction.hpp
477SHAPEACTIONDEFS = \
478 Actions/ShapeAction/CombineShapesAction.def \
479 Actions/ShapeAction/CreateShapeAction.def \
480 Actions/ShapeAction/RemoveShapeAction.def \
481 Actions/ShapeAction/RotateShapeAction.def \
482 Actions/ShapeAction/StretchShapeAction.def \
483 Actions/ShapeAction/TranslateShapeAction.def
484
485TESSELATIONACTIONSOURCE = \
486 Actions/TesselationAction/ConvexEnvelopeAction.cpp \
487 Actions/TesselationAction/NonConvexEnvelopeAction.cpp
488TESSELATIONACTIONHEADER = \
489 Actions/TesselationAction/ConvexEnvelopeAction.hpp \
490 Actions/TesselationAction/NonConvexEnvelopeAction.hpp
491TESSELATIONACTIONDEFS = \
492 Actions/TesselationAction/ConvexEnvelopeAction.def \
493 Actions/TesselationAction/NonConvexEnvelopeAction.def
494
495UNDOACTIONSOURCE = \
496 Actions/RedoAction.cpp \
497 Actions/UndoAction.cpp
498UNDOACTIONHEADER = \
499 Actions/RedoAction.hpp \
500 Actions/UndoAction.hpp
501UNDOACTIONDEFS = \
502 Actions/RedoAction.def \
503 Actions/UndoAction.def
504
505
506WORLDACTIONSOURCE = \
507 Actions/WorldAction/AddEmptyBoundaryAction.cpp \
508 Actions/WorldAction/BoundInBoxAction.cpp \
509 Actions/WorldAction/CenterInBoxAction.cpp \
510 Actions/WorldAction/CenterOnEdgeAction.cpp \
511 Actions/WorldAction/ChangeBoxAction.cpp \
512 Actions/WorldAction/InputAction.cpp \
513 Actions/WorldAction/OutputAction.cpp \
514 Actions/WorldAction/OutputAsAction.cpp \
515 Actions/WorldAction/RepeatBoxAction.cpp \
516 Actions/WorldAction/ScaleBoxAction.cpp \
517 Actions/WorldAction/SetBoundaryConditionsAction.cpp \
518 Actions/WorldAction/SetDefaultNameAction.cpp \
519 Actions/WorldAction/SetWorldTimeAction.cpp
520WORLDACTIONHEADER = \
521 Actions/WorldAction/AddEmptyBoundaryAction.hpp \
522 Actions/WorldAction/BoundInBoxAction.hpp \
523 Actions/WorldAction/CenterInBoxAction.hpp \
524 Actions/WorldAction/CenterOnEdgeAction.hpp \
525 Actions/WorldAction/ChangeBoxAction.hpp \
526 Actions/WorldAction/InputAction.hpp \
527 Actions/WorldAction/OutputAction.hpp \
528 Actions/WorldAction/OutputAsAction.hpp \
529 Actions/WorldAction/RepeatBoxAction.hpp \
530 Actions/WorldAction/ScaleBoxAction.hpp \
531 Actions/WorldAction/SetBoundaryConditionsAction.hpp \
532 Actions/WorldAction/SetDefaultNameAction.hpp \
533 Actions/WorldAction/SetWorldTimeAction.hpp
534WORLDACTIONDEFS = \
535 Actions/WorldAction/AddEmptyBoundaryAction.def \
536 Actions/WorldAction/BoundInBoxAction.def \
537 Actions/WorldAction/CenterInBoxAction.def \
538 Actions/WorldAction/CenterOnEdgeAction.def \
539 Actions/WorldAction/ChangeBoxAction.def \
540 Actions/WorldAction/InputAction.def \
541 Actions/WorldAction/OutputAction.def \
542 Actions/WorldAction/OutputAsAction.def \
543 Actions/WorldAction/RepeatBoxAction.def \
544 Actions/WorldAction/ScaleBoxAction.def \
545 Actions/WorldAction/SetBoundaryConditionsAction.def \
546 Actions/WorldAction/SetDefaultNameAction.def \
547 Actions/WorldAction/SetWorldTimeAction.def
548
549#ACTIONPYTHONSOURCE_WITHDIR = $(ACTIONPROTOTYPESSOURCE:Action.cpp=Action.python.cpp)
550#ACTIONPYTHONSOURCE = $(notdir $(ACTIONPYTHONSOURCE_WITHDIR))
551
552noinst_LTLIBRARIES += \
553 libMolecuilderActions.la \
554 libMolecuilderActionPrototypes.la
555# libMolecuilderActionPython.la
556libMolecuilderActionPrototypes_la_CPPFLAGS = $(AM_CPPFLAGS)
557if CONDJOBMARKET
558libMolecuilderActionPrototypes_la_CPPFLAGS += $(JobMarket_CFLAGS)
559endif
560if CONDLEVMAR
561libMolecuilderActionPrototypes_la_CPPFLAGS += $(LEVMAR_CPPFLAGS)
562endif
563libMolecuilderActions_la_includedir = $(includedir)/MoleCuilder/
564libMolecuilderActionPrototypes_la_includedir = $(includedir)/MoleCuilder/
565#libMolecuilderActionPython_la_includedir = $(includedir)/MoleCuilder/
566
567BUILT_SOURCES += AllActionHeaders.hpp
568if CONDPYTHON
569BUILT_SOURCES += AllActionPython.hpp
570endif
571#$(ACTIONPYTHONSOURCE)
572
573# UIElements/libMolecuilderUI.la
574nobase_libMolecuilderActions_la_include_HEADERS = ${ACTIONSHEADER}
575nobase_libMolecuilderActionPrototypes_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
576nodist_libMolecuilderActionPrototypes_la_include_HEADERS = AllActionHeaders.hpp
577#nobase_libMolecuilderActionPython_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
578#nodist_libMolecuilderActionPython_la_include_HEADERS = AllActionHeaders.hpp
579
580## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
581## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
582## will therefore be treated as if it were literally part of the target name,
583## and the variable name derived from that.
584## The file extension .cc is recognized by Automake, and makes it produce
585## rules which invoke the C++ compiler to produce a libtool object file (.lo)
586## from each source file. Note that it is not necessary to list header files
587## which are already listed elsewhere in a _HEADERS variable assignment.
588libMolecuilderActions_la_SOURCES = ${ACTIONSSOURCE}
589libMolecuilderActionPrototypes_la_SOURCES = ${ACTIONPROTOTYPESSOURCE}
590#libMolecuilderActionPython_la_SOURCES = ${ACTIONPYTHONSOURCE}
591
592## Instruct libtool to include ABI version information in the generated shared
593## library file (.so). The library ABI version is defined in configure.ac, so
594## that all version information is kept in one place.
595#libMolecuilderActions_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
596
597## The generated configuration header is installed in its own subdirectory of
598## $(libdir). The reason for this is that the configuration information put
599## into this header file describes the target platform the installed library
600## has been built for. Thus the file must not be installed into a location
601## intended for architecture-independent files, as defined by the Filesystem
602## Hierarchy Standard (FHS).
603## The nodist_ prefix instructs Automake to not generate rules for including
604## the listed files in the distribution on 'make dist'. Files that are listed
605## in _HEADERS variables are normally included in the distribution, but the
606## configuration header file is generated at configure time and should not be
607## shipped with the source tarball.
608#libMolecuilderActions_libincludedir = $(libdir)/MoleCuilder/include
609#nodist_libMolecuilderActions_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
610
611## Install the generated pkg-config file (.pc) into the expected location for
612## architecture-dependent package configuration information. Occasionally,
613## pkg-config files are also used for architecture-independent data packages,
614## in which case the correct install location would be $(datadir)/pkgconfig.
615#pkgconfigdir = $(libdir)/pkgconfig
616#pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
617
618#SUFFIXES = .pytho n.cpp
619#.python.cpp: $*.def
620# echo "#include \"$<\"" >$@; \
621# echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
622# echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@;
623
624AllActionHeaders.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
625 echo "#ifndef ALLACTIONHEADERS_HPP_" >$@; \
626 echo "#define ALLACTIONHEADERS_HPP_" >>$@; \
627 for file in $(ACTIONPROTOTYPESHEADER); do \
628 echo "#include \"$$file\"" >>$@; \
629 done; \
630 echo "#endif /* ALLACTIONHEADERS_HPP_ */" >>$@;
631
632MOSTLYCLEANFILES += \
633 AllActionHeaders.hpp
634
635if CONDPYTHON
636AllActionPython.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
637 echo "#ifndef ALLACTIONPYTHON_HPP_" >$@; \
638 echo "#define ALLACTIONPYTHON_HPP_" >>$@; \
639 for file in $(ACTIONPROTOTYPESHEADER); do \
640 echo "#include \"`echo $$file | sed -e 's/hpp/def/'`\"" >>$@; \
641 echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
642 echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@; \
643 done; \
644 echo "#endif /* ALLACTIONPYTHON_HPP_ */" >>$@;
645
646MOSTLYCLEANFILES += \
647 AllActionPython.hpp
648
649endif
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