First steps into the code

MoleCuilder has become quite complex, so a few initial pointers might be helpful:

• MoleCuilder has a built-in documentation system through ​http://www.doxygen.org/ doxygen. By default the documentation resides in molecuilder/doc/html/index.html (note: not build64/molecuilder/doc/html!). You have to create it first through by entering in your build directory

  make doc
  

• In general, look at molecuilder/src/builder.cpp as a start. All the stuff that MoleCuilder can do is launched from there and also the main() routine resides therein. If you have a suitable development environment such as Eclipse you can easily strg+click through the functions to discover what they do.