# # ChangeLog for tests # # Generated by Trac 1.4.4 # Dec 29, 2024, 8:08:08 AM Tue, 29 Jun 2010 15:37:58 GMT Frederik Heber [8e0c63] * src/parser.cpp (modified) * tests/regression/testsuite-molecules.at (modified) MEMFIX: MatrixContainer::MatrixContainer() made some initial ... Mon, 28 Jun 2010 15:38:05 GMT Frederik Heber [bdb143] * src/Legacy/oldmenu.cpp (modified) * src/analysis_bonds.cpp (modified) * src/analysis_bonds.hpp (modified) * src/boundary.cpp (modified) * src/builder.cpp (modified) * src/tesselation.cpp (modified) * src/tesselation.hpp (modified) * src/tesselationhelpers.cpp (modified) * src/tesselationhelpers.hpp (modified) * src/unittests/CountBondsUnitTest.cpp (modified) * src/unittests/TestRunnerMain.cpp (modified) * src/unittests/UnitTestMain.cpp (modified) * tests/Tesselations/heptan/1.5/NonConvexEnvelope-heptan.dat (modified) * tests/Tesselations/heptan/2.5/NonConvexEnvelope-heptan.dat (modified) * tests/Tesselations/heptan/2/NonConvexEnvelope-heptan.dat (modified) * tests/Tesselations/heptan/25/NonConvexEnvelope-heptan.dat (modified) * tests/Tesselations/heptan/3.5/NonConvexEnvelope-heptan.dat (modified) * tests/Tesselations/heptan/3/NonConvexEnvelope-heptan.dat (modified) * tests/Tesselations/heptan/4/NonConvexEnvelope-heptan.dat (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified) Merge branch 'StructureRefactoring' into stable Conflicts: ... Sun, 27 Jun 2010 00:52:31 GMT Frederik Heber [b2531f] * src/Actions/MapOfActions.cpp (modified) * src/Actions/MapOfActions.hpp (modified) * src/Actions/MoleculeAction/SuspendInWaterAction.cpp (modified) * src/UIElements/QT4/QTMainWindow.cpp (modified) * src/UIElements/QT4/QTMainWindow.hpp (modified) * src/UIElements/TextUI/TextWindow.cpp (modified) * tests/regression/testsuite-filling.at (modified) * tests/regression/testsuite-molecules.at (modified) Introduced a MenuBar and Menus to the QT interface. - new map ... Fri, 25 Jun 2010 08:11:20 GMT Frederik Heber [4f7f34e] * src/Actions/Makefile.am (modified) * src/Actions/MapOfActions.cpp (modified) * src/Actions/WorldAction/InputAction.cpp (added) * src/Actions/WorldAction/InputAction.hpp (added) * src/Actions/WorldAction/OutputAction.cpp (added) * src/Actions/WorldAction/OutputAction.hpp (added) * src/CommandLineParser.cpp (modified) * src/Makefile.am (modified) * src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-simple_configuration.at (modified) * tests/regression/testsuite-standard_options.at (modified) ParseCommandLineOptions() is not used anymore. - new Actions ... Wed, 23 Jun 2010 15:52:50 GMT Frederik Heber [35b698] * src/Actions/FragmentationAction/FragmentationAction.cpp (modified) * src/Actions/MapOfActions.cpp (modified) * src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified) * src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (modified) * src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified) * src/Actions/MoleculeAction/SaveBondsAction.cpp (modified) * src/Legacy/oldmenu.cpp (modified) * src/Makefile.am (modified) * src/Parser/PcpParser.cpp (modified) * src/Parser/PcpParser.hpp (modified) * src/World.cpp (modified) * src/builder.cpp (modified) * src/config.cpp (modified) * src/config.hpp (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * src/molecule_dynamics.cpp (modified) * src/molecule_fragmentation.cpp (modified) * src/molecule_graph.cpp (modified) * src/moleculelist.cpp (modified) * src/unittests/Makefile.am (modified) * tests/regression/Domain/6/post/test-x.conf.xyz (modified) * tests/regression/Domain/6/post/test-y.conf.xyz (modified) * tests/regression/Domain/6/post/test-z.conf.xyz (modified) * tests/regression/Domain/6/post/test.conf.xyz (modified) * tests/regression/Filling/1/post/test.conf (modified) * tests/regression/Simple_configuration/2/post/test.conf.xyz (modified) * tests/regression/Simple_configuration/3/post/test.conf.xyz (modified) * tests/regression/Simple_configuration/4/post/test.conf (modified) * tests/regression/Simple_configuration/4/post/test.conf.xyz (modified) * tests/regression/Simple_configuration/5/post/test.conf (modified) * tests/regression/Simple_configuration/8/post/test.conf.xyz (modified) * tests/regression/testsuite-fragmentation.at (modified) BIG CHANGE: config::load and config::save in ... Sat, 19 Jun 2010 15:54:47 GMT Frederik Heber [274d45] * src/Hbondangle.db (modified) * src/Hbonddistance.db (modified) * src/config.cpp (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * src/molecule_pointcloud.cpp (modified) * src/moleculelist.cpp (modified) * src/orbitals.db (modified) * src/periodentafel.cpp (modified) * src/valence.db (modified) * tests/regression/Domain/2/post/test.conf (modified) * tests/regression/Domain/3/post/test.conf (modified) * tests/regression/Domain/4/post/test.conf (modified) * tests/regression/Domain/5/post/test.conf (modified) * tests/regression/Filling/1/post/test.conf (modified) * tests/regression/Filling/1/pre/test.conf (modified) * tests/regression/Molecules/6/post/test.conf (modified) * tests/regression/Molecules/6/pre/test.conf (modified) * tests/regression/Molecules/7/post/test.conf (modified) * tests/regression/Molecules/7/pre/test.conf (modified) * tests/regression/Simple_configuration/2/post/test.conf (modified) * tests/regression/Simple_configuration/3/post/test.conf (modified) * tests/regression/Simple_configuration/4/post/test.conf (modified) * tests/regression/Simple_configuration/5/post/test.conf (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified) * tests/regression/testsuite-tesselation.at (modified) FIX: Atoms were stored not in the sequence they were loaded. 1. The ... Sat, 12 Jun 2010 10:34:14 GMT Frederik Heber [980dd6] * src/Actions/MapOfActions.cpp (modified) * src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified) * src/builder.cpp (modified) * tests/Tesselations/defs.in (modified) * tests/regression/testsuite-tesselation.at (modified) Case 'N' is now handled by CommandLineUI. - TESTFIX: Tesselation/1 ... Fri, 11 Jun 2010 19:22:37 GMT Frederik Heber [f6bd32] * src/Actions/MapOfActions.cpp (modified) * src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-tesselation.at (modified) Case 'o' is now handled by CommandLineUI. - As of now, multiple ... Fri, 11 Jun 2010 15:52:44 GMT Frederik Heber [a307af] * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-molecules.at (modified) Case 'S' is now handled by CommandLineUI. Fri, 11 Jun 2010 15:48:32 GMT Frederik Heber [a02462] * src/Actions/MapOfActions.cpp (modified) * src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-molecules.at (modified) Case 'L' is now handled by CommandLineUI. Fri, 11 Jun 2010 15:27:20 GMT Frederik Heber [aacce8] * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-molecules.at (modified) Case 'P' is now handled by CommandLineUI. - TESTFIX: ... Fri, 11 Jun 2010 15:21:51 GMT Frederik Heber [77b2d7] * src/Actions/MapOfActions.cpp (modified) * src/Actions/MoleculeAction/TranslateAction.cpp (modified) * src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-molecules.at (modified) Cases 't' and 'T' are now handled by CommandLineUI. - TESTFIX: both ... Fri, 11 Jun 2010 15:07:11 GMT Frederik Heber [e2b47c] * src/Actions/MapOfActions.cpp (modified) * src/Actions/WorldAction/RemoveSphereOfAtomsAction.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-simple_configuration.at (modified) Case 'R' is now handled by CommandLineUI. - again, for each atom to ... Fri, 11 Jun 2010 14:38:34 GMT Frederik Heber [f4bd01] * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-molecules.at (modified) Case 'A' is now handled by CommandLineUI. - TESTFIX: ... Fri, 11 Jun 2010 14:20:11 GMT Frederik Heber [77de81] * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-molecules.at (modified) Cases 'J' and 'j' are now handled by CommandLineUI. - TESTFIX: ... Fri, 11 Jun 2010 12:20:08 GMT Frederik Heber [54b953] * src/Actions/AtomAction/ChangeElementAction.cpp (modified) * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-simple_configuration.at (modified) Case 'E' is now handled by CommandLineUI. - TESTFIX: --element is ... Fri, 11 Jun 2010 12:19:50 GMT Frederik Heber [f0a3ec] * src/Actions/AtomAction/AddAction.cpp (modified) * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-simple_configuration.at (modified) Case 'a' is now handled by CommandLineUI. - NOTE: atom has still to ... Fri, 11 Jun 2010 12:19:18 GMT Frederik Heber [f821d6] * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-standard_options.at (modified) Case 'n' is now handled by CommandLineUI. - TESTFIX: fastparsing ... Fri, 11 Jun 2010 10:44:46 GMT Frederik Heber [48c338] * tests/regression/testsuite-fragmentation.at (modified) Merge branch 'FixTestSuiteMaxOrderFail2' into stable Fri, 11 Jun 2010 10:43:16 GMT Frederik Heber [0bcd11] * tests/regression/testsuite-fragmentation.at (modified) TESTFIX: Deactivated check of return code for MaxOrder, is declared ... Thu, 10 Jun 2010 16:25:42 GMT Frederik Heber [756b53] * tests/regression/testsuite-fragmentation.at (modified) TESTFIX: Fragmentation/3 is set to BROKEN. - somehow sequence of ... Wed, 09 Jun 2010 15:10:51 GMT Frederik Heber [2b5574] * src/Actions/MapOfActions.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-analysis.at (modified) Case 'm' is now handled by CommandLineUI. - TESTCHANGE: Analysis/5 ... Wed, 09 Jun 2010 15:08:46 GMT Frederik Heber [58bbd3] * src/Actions/MapOfActions.cpp (modified) * src/analysis_correlation.cpp (modified) * src/builder.cpp (modified) * src/moleculelist.cpp (modified) * tests/regression/Analysis/3/post/bin_output.csv (modified) * tests/regression/testsuite-analysis.at (modified) Cases 'C' are now handled by CommandLineUI. - TESTFIX: ... Wed, 09 Jun 2010 14:09:46 GMT Frederik Heber [1e6913] * src/Actions/ActionRegistry.cpp (modified) * src/Actions/ActionRegistry.hpp (modified) * src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified) * tests/regression/testsuite-fragmentation.at (modified) Order of actions called did not conincide with order on command line. ... Tue, 08 Jun 2010 13:49:27 GMT Frederik Heber [e4b5de] * src/Actions/FragmentationAction/FragmentationAction.cpp (modified) * src/Actions/MapOfActions.cpp (modified) * src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified) * src/World.cpp (modified) * src/World.hpp (modified) * src/builder.cpp (modified) * tests/regression/Fragmentation/3/pre/BondFragment0.conf (deleted) * tests/regression/Fragmentation/3/pre/BondFragment0.conf.xyz (deleted) * tests/regression/Fragmentation/3/pre/BondFragment1.conf (deleted) * tests/regression/Fragmentation/3/pre/BondFragment1.conf.xyz (deleted) * tests/regression/Fragmentation/3/pre/BondFragment2.conf (deleted) * tests/regression/Fragmentation/3/pre/BondFragment2.conf.xyz (deleted) * tests/regression/Fragmentation/3/pre/BondFragment3.conf (deleted) * tests/regression/Fragmentation/3/pre/BondFragment3.conf.xyz (deleted) * tests/regression/Fragmentation/3/pre/BondFragment4.conf (deleted) * tests/regression/Fragmentation/3/pre/BondFragment4.conf.xyz (deleted) * tests/regression/Fragmentation/3/pre/BondFragmentAdjacency.dat (deleted) * tests/regression/Fragmentation/3/pre/BondFragmentForces-Factors.dat (deleted) * tests/regression/Fragmentation/3/pre/BondFragmentKeySets.dat (deleted) * tests/regression/Fragmentation/3/pre/BondFragmentOrderAtSite.dat (deleted) * tests/regression/Fragmentation/3/pre/BondFragmentTE-Factors.dat (deleted) * tests/regression/testsuite-fragmentation.at (modified) Case 'f' is now handled by CommandLineUI. - ... Mon, 07 Jun 2010 23:55:30 GMT Frederik Heber [9907e7] * src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite-filling.at (modified) Case '-F' is now handled by CommandLineUI. - FIX: ... Wed, 02 Jun 2010 16:31:10 GMT Frederik Heber [3610bb] * tests/regression/Simple_configuration/5/post/test.conf.in (added) test.conf.in was missing for test Simple_configuration/5. ... Wed, 02 Jun 2010 08:37:17 GMT Frederik Heber [98a8b4] * tests/regression/Analysis/1/post/bin_output.csv (modified) * tests/regression/Analysis/2/post/bin_output-10.csv (modified) * tests/regression/Analysis/2/post/bin_output-20.csv (modified) * tests/regression/Analysis/2/post/bin_output-5.csv (modified) * tests/regression/testsuite-analysis.at (modified) TESTFIX: Analysis/... no more diff of output.csv (nameing dependent) ... Tue, 01 Jun 2010 21:04:17 GMT Frederik Heber [e0aee2b] * src/boundary.cpp (modified) * tests/regression/Filling/1/post/test.conf (modified) Bugfix of FillBoxWithMolecule() and Testfix of Filling/1 - BUGFIX: ... Tue, 01 Jun 2010 20:25:36 GMT Frederik Heber [15b670] * src/molecule_geometry.cpp (modified) * src/tesselationhelpers.cpp (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified) Testfixes for Tesselations/1-3 and bugfixes for ... Tue, 01 Jun 2010 19:59:25 GMT Frederik Heber [0de7e8] * src/helpers.hpp (modified) * src/molecule_fragmentation.cpp (modified) * src/molecule_graph.cpp (modified) * tests/regression/testsuite-fragmentation.at (modified) FIX: Test Fragmentation is at MaxOrder was broken. - BUGFIX: ... Tue, 01 Jun 2010 08:02:48 GMT Frederik Heber [acf800] * src/molecule_graph.cpp (modified) * tests/regression/Molecules/2/post/test.adj (modified) * tests/regression/Molecules/2/post/test.dbond (modified) * tests/regression/Molecules/2/pre/test.conf (modified) TESTFIX: Wrong (old) ordering of conf files (IonTyp2 before IonType1) ... Tue, 01 Jun 2010 07:28:15 GMT Frederik Heber [bd6bfa] * src/bondgraph.cpp (modified) * src/molecule.hpp (modified) * src/molecule_graph.cpp (modified) * src/moleculelist.cpp (modified) * tests/regression/Molecules/6/post/test.conf (modified) * tests/regression/Molecules/7/post/test.conf (modified) Fixes after first,last removal. - BUGFIX: ... Mon, 31 May 2010 19:46:59 GMT Frederik Heber [1b9321] * tests/regression/Domain/6/post/test.conf.xyz (added) Added missing test.conf.xyz for Domain/6. Signed-off-by: Frederik ... Mon, 31 May 2010 17:32:27 GMT Frederik Heber [1024cb] * src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (modified) * src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified) * src/Actions/WorldAction/RepeatBoxAction.cpp (modified) * src/Helpers/Assert.cpp (modified) * src/Helpers/MemDebug.cpp (modified) * src/Helpers/MemDebug.hpp (modified) * src/Legacy/oldmenu.cpp (modified) * src/Makefile.am (modified) * src/Patterns/Cacheable.hpp (modified) * src/Patterns/ObservedIterator.hpp (added) * src/Patterns/Observer.cpp (modified) * src/Patterns/Observer.hpp (modified) * src/Plane.cpp (modified) * src/Plane.hpp (modified) * src/analysis_bonds.cpp (modified) * src/analysis_correlation.cpp (modified) * src/atom.cpp (modified) * src/bondgraph.cpp (modified) * src/boundary.cpp (modified) * src/builder.cpp (modified) * src/config.cpp (modified) * src/helpers.cpp (modified) * src/helpers.hpp (modified) * src/lists.cpp (deleted) * src/lists.hpp (modified) * src/memoryallocator.cpp (added) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * src/molecule_dynamics.cpp (modified) * src/molecule_fragmentation.cpp (modified) * src/molecule_geometry.cpp (modified) * src/molecule_graph.cpp (modified) * src/molecule_pointcloud.cpp (modified) * src/molecule_template.hpp (modified) * src/moleculelist.cpp (modified) * src/tesselation.cpp (modified) * src/tesselation.hpp (modified) * src/tesselationhelpers.cpp (modified) * src/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified) * src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified) * src/unittests/AnalysisPairCorrelationUnitTest.cpp (modified) * src/unittests/CountBondsUnitTest.cpp (modified) * src/unittests/LinkedCellUnitTest.cpp (modified) * src/unittests/Makefile.am (modified) * src/unittests/ObserverTest.cpp (modified) * src/unittests/ObserverTest.hpp (modified) * src/unittests/analysisbondsunittest.cpp (modified) * src/unittests/bondgraphunittest.cpp (modified) * src/unittests/bondgraphunittest.hpp (modified) * src/unittests/listofbondsunittest.cpp (modified) * src/unittests/listofbondsunittest.hpp (modified) * src/vector.cpp (modified) * src/vector.hpp (modified) * tests/regression/Domain/5/post/test.conf (modified) * tests/regression/Domain/5/pre/test.conf (modified) * tests/regression/Domain/6/post/test-x.conf (deleted) * tests/regression/Domain/6/post/test-x.conf.xyz (added) * tests/regression/Domain/6/post/test-y.conf (deleted) * tests/regression/Domain/6/post/test-y.conf.xyz (added) * tests/regression/Domain/6/post/test-z.conf (deleted) * tests/regression/Domain/6/post/test-z.conf.xyz (added) * tests/regression/Domain/6/post/test.conf (deleted) * tests/regression/Domain/6/pre/test.conf (modified) * tests/regression/Simple_configuration/8/post/test.conf (deleted) * tests/regression/Simple_configuration/8/post/test.conf.xyz (added) * tests/regression/testsuite-domain.at (modified) * tests/regression/testsuite-simple_configuration.at (modified) Merge commit 'jupiter/MoleculeStartEndSwitch' into ... Mon, 31 May 2010 14:33:11 GMT Frederik Heber [42af9e] * src/builder.cpp (modified) * src/config.cpp (modified) * src/molecule_fragmentation.cpp (modified) * src/periodentafel.cpp (modified) * tests/regression/testsuite-simple_configuration.at (modified) MEMFIXES: no more default saving/loading of element's db, ... Mon, 31 May 2010 08:34:52 GMT Frederik Heber [87b597] * tests/regression/testsuite-analysis.at (modified) TESTFIX: Removed diff of output.csv for surface correlation as this ... Mon, 31 May 2010 08:34:09 GMT Frederik Heber [5ddb8a] * tests/regression/Makefile.am (modified) * tests/regression/testsuite (deleted) Added out-sourced testsuite files to Makefile.am such that they are ... Sun, 30 May 2010 20:55:12 GMT Frederik Heber [8c574b] * tests/regression/testsuite (added) * tests/regression/testsuite-analysis.at (added) * tests/regression/testsuite-domain.at (added) * tests/regression/testsuite-filling.at (added) * tests/regression/testsuite-fragmentation.at (added) * tests/regression/testsuite-graph.at (added) * tests/regression/testsuite-molecules.at (added) * tests/regression/testsuite-simple_configuration.at (added) * tests/regression/testsuite-specifics.at (added) * tests/regression/testsuite-standard_options.at (added) * tests/regression/testsuite-tesselation.at (added) * tests/regression/testsuite.at (modified) Split up testsuite into several at-scripts. - the testsuite has ... Sun, 30 May 2010 19:40:32 GMT Frederik Heber [afd01c] * tests/regression/Domain/6/post/test-x.conf (added) * tests/regression/Domain/6/post/test-y.conf (added) * tests/regression/Domain/6/post/test-z.conf (added) * tests/regression/Domain/6/post/test.conf (added) * tests/regression/Domain/6/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-d' (duplicate box) to testsuite. Sun, 30 May 2010 19:05:43 GMT Frederik Heber [746c57] * tests/regression/Filling/2/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-u' (suspend in water) to testsuite. - this is broken ... Sun, 30 May 2010 18:28:14 GMT Frederik Heber [d6d6c1] * tests/regression/Analysis/5/pre/test.conf (added) * tests/regression/Molecules/8/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-m' (principal axis system) to testsuite. Sun, 30 May 2010 17:31:15 GMT Frederik Heber [8048a4] * tests/regression/Domain/5/post/test.conf (added) * tests/regression/Domain/5/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-s' (scaling box) to testsuite. Sun, 30 May 2010 17:29:38 GMT Frederik Heber [eddea2] * src/molecule.hpp (modified) * src/molecule_geometry.cpp (modified) * src/vector.cpp (modified) * tests/regression/Molecules/7/post/test.conf (added) * tests/regression/Molecules/7/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-T' (periodic translation) to testsuite. - BUGFIX: ... Sun, 30 May 2010 16:55:04 GMT Frederik Heber [5d12d2] * tests/regression/Molecules/6/post/test.conf (added) * tests/regression/Molecules/6/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-t' (translation) to testsuite. Sun, 30 May 2010 16:51:45 GMT Frederik Heber [9b7db1] * src/builder.cpp (modified) * tests/regression/Simple_configuration/8/post/test.conf (added) * tests/regression/Simple_configuration/8/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-R' (removing atoms outside of sphere) to testsuite. - ... Sun, 30 May 2010 16:09:06 GMT Frederik Heber [c7a473] * src/atom_trajectoryparticle.cpp (modified) * src/molecule_dynamics.cpp (modified) * tests/regression/Molecules/5/pre/test.conf (added) * tests/regression/Molecules/5/pre/test.forces (added) * tests/regression/testsuite.at (modified) Added cased '-P' (force integration) to testsuite. - this is ... Sun, 30 May 2010 15:38:38 GMT Frederik Heber [f8f14d] * src/builder.cpp (modified) * tests/regression/Molecules/4/post/test.conf (added) * tests/regression/Molecules/4/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-L' (linear interpolation) to testsuite. - this just ... Sun, 30 May 2010 15:30:32 GMT Frederik Heber [13bfeb] * tests/regression/Molecules/3/post/test.ekin (added) * tests/regression/Molecules/3/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-S' (storing temperature) to testsuite. - made three ... Sun, 30 May 2010 15:24:29 GMT Frederik Heber [72e36f] * tests/regression/Molecules/2/post/test.adj (added) * tests/regression/Molecules/2/post/test.dbond (added) * tests/regression/Molecules/2/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added cases '-j' (storing bonds) and '-J' (storing adjacency) to ... Sun, 30 May 2010 15:18:50 GMT Frederik Heber [c68c90] * src/builder.cpp (modified) * src/molecule_graph.cpp (modified) * tests/regression/Molecules/1/pre/test.conf (added) * tests/regression/Molecules/1/pre/test.dbond (added) * tests/regression/testsuite.at (modified) Added case '-A' (parsing bonds) to testsuite. - ... Sun, 30 May 2010 14:46:39 GMT Frederik Heber [1325ba] * tests/regression/Filling/1/post/test.conf (added) * tests/regression/Filling/1/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-F' (filling with molecule) to testsuite. Sun, 30 May 2010 13:58:31 GMT Frederik Heber [ef2b39] * tests/regression/Analysis/4/post/bin_output.csv (added) * tests/regression/Analysis/4/post/output.csv (added) * tests/regression/Analysis/4/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-C S' (correlation to surface) to testsuite. - created ... Sun, 30 May 2010 13:42:26 GMT Frederik Heber [08f6ff] * src/builder.cpp (modified) * tests/regression/Analysis/3/post/bin_output.csv (added) * tests/regression/Analysis/3/post/output.csv (added) * tests/regression/Analysis/3/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-C P' (correlation to point) to testsuite. - DOCUFIX: ... Sun, 30 May 2010 13:41:37 GMT Frederik Heber [06f8ee] * src/builder.cpp (modified) * tests/regression/Analysis/1/post/bin_output.csv (added) * tests/regression/Analysis/1/post/output.csv (added) * tests/regression/Analysis/1/pre/test.conf (added) * tests/regression/Analysis/2/post/bin_output-10.csv (added) * tests/regression/Analysis/2/post/bin_output-20.csv (added) * tests/regression/Analysis/2/post/bin_output-5.csv (added) * tests/regression/Analysis/2/post/output-10.csv (added) * tests/regression/Analysis/2/post/output-20.csv (added) * tests/regression/Analysis/2/post/output-5.csv (added) * tests/regression/Analysis/2/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-C E' (pair correlation analysis) to testsuite. - ... Sun, 30 May 2010 11:51:28 GMT Frederik Heber [046a1e] * tests/regression/Graph/2/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-I' (subgraph dissection) to testsuite. - constructed ... Sun, 30 May 2010 11:32:05 GMT Frederik Heber [5188f5] * src/builder.cpp (modified) * tests/regression/testsuite.at (modified) Added case '-M' (MPQC basis) to testsuite. - ... Sun, 30 May 2010 11:05:54 GMT Frederik Heber [93d732b] * src/World.cpp (modified) * src/builder.cpp (modified) * tests/regression/testsuite.at (modified) Added case '-X' (default mol name) to testsuite and bugfix. - ... Sun, 30 May 2010 10:57:14 GMT Frederik Heber [e8e48ab] * tests/regression/testsuite.at (modified) Added case '-n' (fast parsing) to testsuite. Sun, 30 May 2010 10:57:01 GMT Frederik Heber [403637] * tests/regression/testsuite.at (modified) Added case '-g' (load bond table) to testsuite. Sun, 30 May 2010 10:53:16 GMT Frederik Heber [ff73a2] * src/periodentafel.cpp (modified) * tests/regression/testsuite.at (modified) Refined check for case '-e' of testsuite and some found bugfixes of ... Sun, 30 May 2010 10:00:41 GMT Frederik Heber [2f0c42] * tests/regression/testsuite.at (modified) Added test for parsing specified element database to testsuite. Sun, 30 May 2010 09:54:26 GMT Frederik Heber [a97f55] * tests/regression/testsuite.at (modified) Extended standard options part of testsuite to include further tests. Sun, 30 May 2010 09:49:37 GMT Frederik Heber [745874] * tests/regression/Domain/4/post/test.conf (added) * tests/regression/Domain/4/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-O' to testsuite. Sun, 30 May 2010 09:45:41 GMT Frederik Heber [0335a2] * tests/regression/Domain/3/post/test.conf (added) * tests/regression/Domain/3/pre/test.conf (added) * tests/regression/testsuite.at (modified) Added case '-c' to testsuite. Sun, 30 May 2010 09:21:01 GMT Frederik Heber [318cea] * tests/Tesselations/defs.in (modified) FIX: Tesselations test failed on first. - defs.in would go into ... Sun, 30 May 2010 09:18:14 GMT Frederik Heber [b2b47f] * configure.ac (modified) * tests/Makefile.am (modified) * tests/regression/Makefile.am (added) * tests/regression/atlocal.in (moved) * tests/regression/molecuilder.in (moved) * tests/regression/testsuite.at (moved) Shifted regression testsuite into folder regression. This is to ... Sat, 29 May 2010 18:57:36 GMT Frederik Heber [e3989a] * tests/regression/Domain/2/post/test.conf (added) * tests/regression/Domain/2/pre/test.conf (added) * tests/testsuite.at (modified) Added case '-b' to testsuite. Sat, 29 May 2010 18:29:33 GMT Frederik Heber [c82720] * tests/regression/Domain/1/post/test.conf (added) * tests/testsuite.at (modified) Added case '-B' to testsuite. - added new set of tests 'Domain' Sat, 29 May 2010 15:13:36 GMT Frederik Heber [d8c0ed] * tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified) Merge branch 'FixTestsuiteDetermineCenterOfAllBug' into ... Sat, 29 May 2010 15:12:43 GMT Frederik Heber [f37746] * tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified) FIX: As molecule::DetermineCenterOfAll() was broken, centers used in ... Sat, 29 May 2010 14:00:12 GMT Frederik Heber [9757d9] * tests/testsuite.at (modified) Merge branch 'FixTestsuiteCode134onElementsDB' into ... Sat, 29 May 2010 13:52:51 GMT Frederik Heber [6670a97] * src/Actions/MapOfActions.cpp (modified) * tests/testsuite.at (modified) Change to testsuite as verbosity is now defined as (-v 3) not as ... Sat, 29 May 2010 13:24:29 GMT Frederik Heber [60f50a] * tests/testsuite.at (modified) TESTFIX: Testuite expected return code 134 instead of 255 for wrong ... Tue, 18 May 2010 15:58:58 GMT Frederik Heber [673c7f] * src/molecule_geometry.cpp (modified) * tests/regression/Simple_configuration/2/post/test.conf.in (added) * tests/regression/Simple_configuration/3/post/test.conf.in (added) BUGFIX: molecule::DetermineCenterOfAll() was broken for single atom. ... Tue, 18 May 2010 15:20:52 GMT Frederik Heber [4eb4fe] * src/analysis_bonds.cpp (modified) * src/analysis_bonds.hpp (modified) * src/builder.cpp (modified) * src/elements.db (modified) * src/elements_db.cpp (added) * src/elements_db.hpp (added) * src/periodentafel.cpp (modified) * src/periodentafel.hpp (modified) * src/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified) * src/unittests/AnalysisCorrelationToPointUnitTest.hpp (modified) * src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified) * src/unittests/AnalysisCorrelationToSurfaceUnitTest.hpp (modified) * src/unittests/AnalysisPairCorrelationUnitTest.cpp (modified) * src/unittests/AnalysisPairCorrelationUnitTest.hpp (modified) * src/unittests/CountBondsUnitTest.cpp (modified) * src/unittests/CountBondsUnitTest.hpp (modified) * src/unittests/LinkedCellUnitTest.cpp (modified) * src/unittests/LinkedCellUnitTest.hpp (modified) * src/unittests/Makefile.am (modified) * src/unittests/ParserUnitTest.cpp (modified) * src/unittests/analysisbondsunittest.cpp (modified) * src/unittests/analysisbondsunittest.hpp (modified) * src/unittests/bondgraphunittest.cpp (modified) * src/unittests/bondgraphunittest.hpp (modified) * src/unittests/listofbondsunittest.cpp (modified) * src/unittests/listofbondsunittest.hpp (modified) * src/unittests/periodentafelTest.cpp (added) * src/unittests/periodentafelTest.hpp (added) * tests/testsuite.at (modified) "-e " not necessary anymore. Removed necessity of ... Mon, 17 May 2010 17:32:33 GMT Frederik Heber [2a5eb7] * tests/testsuite.at (modified) TESTFIX: Changed return code on wrong arguments from 255 to 134. - ... Sat, 15 May 2010 22:11:50 GMT Frederik Heber [12872d] * tests/Tesselations/defs.in (modified) FIX: Don't compare tesselation files directly but rather sorted list ... Sat, 08 May 2010 11:33:50 GMT Frederik Heber [bdedb1] * tests/Tesselations/1_2-dimethoxyethane.test (modified) * tests/Tesselations/1_2-dimethoxyethane/1.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethoxyethane/2.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethoxyethane/2/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethoxyethane/25/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethoxyethane/3.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethoxyethane/3/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethoxyethane/4/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethoxyethane/NonConvexEnvelope-1_2-dimethoxyethane.dat (deleted) * tests/Tesselations/1_2-dimethylbenzene.test (modified) * tests/Tesselations/1_2-dimethylbenzene/1.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/2.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/2/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/25/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/3.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/3/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/4/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/NonConvexEnvelope-1_2-dimethylbenzene.dat (deleted) * tests/Tesselations/2-methylcyclohexanone.test (modified) * tests/Tesselations/2-methylcyclohexanone/1.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/2-methylcyclohexanone/2.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/2-methylcyclohexanone/2/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/2-methylcyclohexanone/25/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/2-methylcyclohexanone/3.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/2-methylcyclohexanone/3/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/2-methylcyclohexanone/4/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/2-methylcyclohexanone/NonConvexEnvelope-2-methylcyclohexanone.dat (deleted) * tests/Tesselations/C16_0-Torus.test (deleted) * tests/Tesselations/C16_0-Torus/C16_0-Torus.xyz (deleted) * tests/Tesselations/C16_0-Torus/NonConvexEnvelope-C16_0-Torus.dat (deleted) * tests/Tesselations/Makefile.am (modified) * tests/Tesselations/N_N-dimethylacetamide.test (modified) * tests/Tesselations/N_N-dimethylacetamide/1.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added) * tests/Tesselations/N_N-dimethylacetamide/2.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added) * tests/Tesselations/N_N-dimethylacetamide/2/NonConvexEnvelope-N_N-dimethylacetamide.dat (added) * tests/Tesselations/N_N-dimethylacetamide/25/NonConvexEnvelope-N_N-dimethylacetamide.dat (added) * tests/Tesselations/N_N-dimethylacetamide/3.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added) * tests/Tesselations/N_N-dimethylacetamide/3/NonConvexEnvelope-N_N-dimethylacetamide.dat (added) * tests/Tesselations/N_N-dimethylacetamide/4/NonConvexEnvelope-N_N-dimethylacetamide.dat (moved) * tests/Tesselations/benzene.test (modified) * tests/Tesselations/benzene/1.5/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/2.5/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/2/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/25/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/3.5/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/3/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/4/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/NonConvexEnvelope-benzene.dat (deleted) * tests/Tesselations/cholesterol.test (modified) * tests/Tesselations/cholesterol/1.5/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/2.5/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/2/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/25/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/3.5/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/3/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/4/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/NonConvexEnvelope-cholesterol.dat (deleted) * tests/Tesselations/cluster.test (deleted) * tests/Tesselations/cluster/NonConvexEnvelope-cluster.dat (deleted) * tests/Tesselations/cluster/cluster.dbond (deleted) * tests/Tesselations/cluster/cluster.xyz (deleted) * tests/Tesselations/cycloheptane.test (modified) * tests/Tesselations/cycloheptane/1.5/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/2.5/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/2/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/25/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/3.5/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/3/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/4/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/NonConvexEnvelope-cycloheptane.dat (deleted) * tests/Tesselations/defs.in (modified) * tests/Tesselations/dimethyl_bromomalonate.test (modified) * tests/Tesselations/dimethyl_bromomalonate/1.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/2.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/2/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/25/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/3.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/3/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/4/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/NonConvexEnvelope-dimethyl_bromomalonate.dat (deleted) * tests/Tesselations/glucose.test (modified) * tests/Tesselations/glucose/1.5/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/2.5/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/2/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/25/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/3.5/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/3/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/4/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/NonConvexEnvelope-glucose.dat (deleted) * tests/Tesselations/heptan.test (modified) * tests/Tesselations/heptan/1.5/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/2.5/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/2/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/25/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/3.5/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/3/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/4/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/NonConvexEnvelope-heptan.dat (deleted) * tests/Tesselations/isoleucine.test (modified) * tests/Tesselations/isoleucine/1.5/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/2.5/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/2/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/25/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/3.5/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/3/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/4/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/NonConvexEnvelope-isoleucine.dat (deleted) * tests/Tesselations/neohexane.test (modified) * tests/Tesselations/neohexane/1.5/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/2.5/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/2/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/25/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/3.5/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/3/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/4/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/NonConvexEnvelope-neohexane.dat (deleted) * tests/Tesselations/proline.test (modified) * tests/Tesselations/proline/1.5/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/2.5/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/2/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/25/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/3.5/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/3/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/4/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/NonConvexEnvelope-proline.dat (deleted) * tests/Tesselations/putrescine.test (modified) * tests/Tesselations/putrescine/1.5/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/2.5/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/2/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/25/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/3.5/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/3/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/4/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/NonConvexEnvelope-putrescine.dat (deleted) * tests/Tesselations/round_cluster.test (deleted) * tests/Tesselations/round_cluster/NonConvexEnvelope-round_cluster.dat (deleted) * tests/Tesselations/round_cluster/round_cluster.dbond (deleted) * tests/Tesselations/round_cluster/round_cluster.xyz (deleted) * tests/Tesselations/tartaric_acid.test (modified) * tests/Tesselations/tartaric_acid/1.5/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/2.5/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/2/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/25/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/3.5/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/3/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/4/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/NonConvexEnvelope-tartaric_acid.dat (deleted) Change of the Tesselation testsuite. - tests C16_0Torus, cluster, ... Mon, 26 Apr 2010 18:19:38 GMT Frederik Heber [c695c9] * tests/Tesselations/1_2-dimethylbenzene/tecplot.phy (deleted) * tests/Tesselations/defs.in (modified) Merge branch 'FixMolecuilderTestsTesselations_defs' into ... Mon, 26 Apr 2010 18:19:03 GMT Frederik Heber [491876] * tests/Tesselations/1_2-dimethylbenzene/tecplot.phy (deleted) * tests/Tesselations/defs.in (modified) FIX: Tesselation does not work in first run due to still present ... Mon, 26 Apr 2010 17:25:44 GMT Frederik Heber [260c29] * tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified) Regression test of Tesselation for test case 15 "Big non-convex ... Wed, 13 Jan 2010 13:37:01 GMT Frederik Heber [fc9992] * src/tesselationhelpers.cpp (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified) Small fixes to make checks working again. - Tesselations tests 13 ... Wed, 16 Dec 2009 16:18:46 GMT Frederik Heber [0b2dd2] * src/builder.cpp (modified) * src/molecule_graph.cpp (modified) * src/moleculelist.cpp (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified) * tests/testsuite.at (modified) Merge branch 'FixTestSuite' into FixDegeneratedTesselation Wed, 16 Dec 2009 16:17:50 GMT Frederik Heber [482373] * src/builder.cpp (modified) * src/molecule_graph.cpp (modified) * src/moleculelist.cpp (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified) * tests/testsuite.at (modified) Fixing the testsuite. - Putting performCriticalExit() everywhere ... Thu, 26 Nov 2009 11:40:01 GMT Frederik Heber [4fc93f] * src/boundary.cpp (modified) * src/boundary.hpp (modified) * src/builder.cpp (modified) * src/config.cpp (modified) * tests/Tesselations/defs.in (added) removing automatic dissection on loading, Tesselations test now ... Tue, 24 Nov 2009 15:34:49 GMT Frederik Heber [6a7f78c] * src/boundary.cpp (modified) * src/builder.cpp (modified) * src/config.cpp (modified) * src/molecule.hpp (modified) * src/molecule_pointcloud.cpp (modified) * src/moleculelist.cpp (modified) * src/tesselation.cpp (modified) * src/tesselation.hpp (modified) * src/tesselationhelpers.cpp (modified) * tests/Tesselations/1_2-dimethoxyethane/NonConvexEnvelope-1_2-dimethoxyethane.dat (modified) * tests/Tesselations/1_2-dimethylbenzene/NonConvexEnvelope-1_2-dimethylbenzene.dat (modified) * tests/Tesselations/2-methylcyclohexanone/NonConvexEnvelope-2-methylcyclohexanone.dat (modified) * tests/Tesselations/C16_0-Torus/NonConvexEnvelope-C16_0-Torus.dat (modified) * tests/Tesselations/Makefile.am (modified) * tests/Tesselations/N_N-dimethylacetamide/NonConvexEnvelope-N_N-dimethylacetamide.dat (modified) * tests/Tesselations/benzene.test (added) * tests/Tesselations/benzene/NonConvexEnvelope-benzene.dat (added) * tests/Tesselations/benzene/benzene.xyz (added) * tests/Tesselations/cholesterol/NonConvexEnvelope-cholesterol.dat (modified) * tests/Tesselations/cluster/NonConvexEnvelope-cluster.dat (modified) * tests/Tesselations/cycloheptane/NonConvexEnvelope-cycloheptane.dat (modified) * tests/Tesselations/dimethyl_bromomalonate/NonConvexEnvelope-dimethyl_bromomalonate.dat (modified) * tests/Tesselations/glucose/NonConvexEnvelope-glucose.dat (modified) * tests/Tesselations/heptan/NonConvexEnvelope-heptan.dat (modified) * tests/Tesselations/isoleucine/NonConvexEnvelope-isoleucine.dat (modified) * tests/Tesselations/neohexane/NonConvexEnvelope-neohexane.dat (modified) * tests/Tesselations/proline/NonConvexEnvelope-proline.dat (modified) * tests/Tesselations/putrescine/NonConvexEnvelope-putrescine.dat (modified) * tests/Tesselations/round_cluster/NonConvexEnvelope-round_cluster.dat (modified) * tests/Tesselations/tartaric_acid/NonConvexEnvelope-tartaric_acid.dat (modified) Fixes and naming of final Tecplot output file is now molecule name. ... Tue, 10 Nov 2009 20:57:58 GMT Frederik Heber [36eb4e] * configure.ac (modified) * tests/Makefile.am (modified) * tests/Tesselations/1_2-dimethoxyethane.test (added) * tests/Tesselations/1_2-dimethoxyethane/1_2-dimethoxyethane.xyz (added) * tests/Tesselations/1_2-dimethoxyethane/NonConvexEnvelope-1_2-dimethoxyethane.dat (added) * tests/Tesselations/1_2-dimethylbenzene.test (added) * tests/Tesselations/1_2-dimethylbenzene/1_2-dimethylbenzene.xyz (added) * tests/Tesselations/1_2-dimethylbenzene/NonConvexEnvelope-1_2-dimethylbenzene.dat (added) * tests/Tesselations/1_2-dimethylbenzene/tecplot.phy (added) * tests/Tesselations/2-methylcyclohexanone.test (added) * tests/Tesselations/2-methylcyclohexanone/2-methylcyclohexanone.xyz (added) * tests/Tesselations/2-methylcyclohexanone/NonConvexEnvelope-2-methylcyclohexanone.dat (added) * tests/Tesselations/C16_0-Torus.test (added) * tests/Tesselations/C16_0-Torus/C16_0-Torus.xyz (added) * tests/Tesselations/C16_0-Torus/NonConvexEnvelope-C16_0-Torus.dat (added) * tests/Tesselations/Makefile.am (added) * tests/Tesselations/N_N-dimethylacetamide.test (added) * tests/Tesselations/N_N-dimethylacetamide/N_N-dimethylacetamide.xyz (added) * tests/Tesselations/N_N-dimethylacetamide/NonConvexEnvelope-N_N-dimethylacetamide.dat (added) * tests/Tesselations/cholesterol.test (added) * tests/Tesselations/cholesterol/NonConvexEnvelope-cholesterol.dat (added) * tests/Tesselations/cholesterol/cholesterol.xyz (added) * tests/Tesselations/cluster.test (added) * tests/Tesselations/cluster/NonConvexEnvelope-cluster.dat (added) * tests/Tesselations/cluster/cluster.dbond (added) * tests/Tesselations/cluster/cluster.xyz (added) * tests/Tesselations/cycloheptane.test (added) * tests/Tesselations/cycloheptane/NonConvexEnvelope-cycloheptane.dat (added) * tests/Tesselations/cycloheptane/cycloheptane.xyz (added) * tests/Tesselations/dimethyl_bromomalonate.test (added) * tests/Tesselations/dimethyl_bromomalonate/NonConvexEnvelope-dimethyl_bromomalonate.dat (added) * tests/Tesselations/dimethyl_bromomalonate/dimethyl_bromomalonate.xyz (added) * tests/Tesselations/glucose.test (added) * tests/Tesselations/glucose/NonConvexEnvelope-glucose.dat (added) * tests/Tesselations/glucose/glucose.xyz (added) * tests/Tesselations/heptan.test (added) * tests/Tesselations/heptan/NonConvexEnvelope-heptan.dat (added) * tests/Tesselations/heptan/heptan.xyz (added) * tests/Tesselations/isoleucine.test (added) * tests/Tesselations/isoleucine/NonConvexEnvelope-isoleucine.dat (added) * tests/Tesselations/isoleucine/isoleucine.xyz (added) * tests/Tesselations/neohexane.test (added) * tests/Tesselations/neohexane/NonConvexEnvelope-neohexane.dat (added) * tests/Tesselations/neohexane/neohexane.xyz (added) * tests/Tesselations/proline.test (added) * tests/Tesselations/proline/NonConvexEnvelope-proline.dat (added) * tests/Tesselations/proline/proline.xyz (added) * tests/Tesselations/putrescine.test (added) * tests/Tesselations/putrescine/NonConvexEnvelope-putrescine.dat (added) * tests/Tesselations/putrescine/putrescine.xyz (added) * tests/Tesselations/round_cluster.test (added) * tests/Tesselations/round_cluster/NonConvexEnvelope-round_cluster.dat (added) * tests/Tesselations/round_cluster/round_cluster.dbond (added) * tests/Tesselations/round_cluster/round_cluster.xyz (added) * tests/Tesselations/tartaric_acid.test (added) * tests/Tesselations/tartaric_acid/NonConvexEnvelope-tartaric_acid.dat (added) * tests/Tesselations/tartaric_acid/tartaric_acid.xyz (added) Added Tesselation testsets as TESTS to molecuilder. - defs.in with ... Tue, 06 Oct 2009 17:56:15 GMT Frederik Heber [ebcade] * src/builder.cpp (modified) * tests/Makefile.am (modified) * tests/regression/Fragmentation/1/pre/test.conf (added) * tests/regression/Fragmentation/2/post/BondFragment0.conf (added) * tests/regression/Fragmentation/2/post/BondFragment0.conf.xyz (added) * tests/regression/Fragmentation/2/post/BondFragment1.conf (added) * tests/regression/Fragmentation/2/post/BondFragment1.conf.xyz (added) * tests/regression/Fragmentation/2/post/BondFragment2.conf (added) * tests/regression/Fragmentation/2/post/BondFragment2.conf.xyz (added) * tests/regression/Fragmentation/2/post/BondFragment3.conf (added) * tests/regression/Fragmentation/2/post/BondFragment3.conf.xyz (added) * tests/regression/Fragmentation/2/post/BondFragment4.conf (added) * tests/regression/Fragmentation/2/post/BondFragment4.conf.xyz (added) * tests/regression/Fragmentation/2/post/BondFragmentAdjacency.dat (added) * tests/regression/Fragmentation/2/post/BondFragmentForces-Factors.dat (added) * tests/regression/Fragmentation/2/post/BondFragmentKeySets.dat (added) * tests/regression/Fragmentation/2/post/BondFragmentOrderAtSite.dat (added) * tests/regression/Fragmentation/2/post/BondFragmentTE-Factors.dat (added) * tests/regression/Fragmentation/2/post/test.conf (added) * tests/regression/Fragmentation/2/pre/test.conf (added) * tests/regression/Fragmentation/3/pre/BondFragment0.conf (added) * tests/regression/Fragmentation/3/pre/BondFragment0.conf.xyz (added) * tests/regression/Fragmentation/3/pre/BondFragment1.conf (added) * tests/regression/Fragmentation/3/pre/BondFragment1.conf.xyz (added) * tests/regression/Fragmentation/3/pre/BondFragment2.conf (added) * tests/regression/Fragmentation/3/pre/BondFragment2.conf.xyz (added) * tests/regression/Fragmentation/3/pre/BondFragment3.conf (added) * tests/regression/Fragmentation/3/pre/BondFragment3.conf.xyz (added) * tests/regression/Fragmentation/3/pre/BondFragment4.conf (added) * tests/regression/Fragmentation/3/pre/BondFragment4.conf.xyz (added) * tests/regression/Fragmentation/3/pre/BondFragmentAdjacency.dat (added) * tests/regression/Fragmentation/3/pre/BondFragmentForces-Factors.dat (added) * tests/regression/Fragmentation/3/pre/BondFragmentKeySets.dat (added) * tests/regression/Fragmentation/3/pre/BondFragmentOrderAtSite.dat (added) * tests/regression/Fragmentation/3/pre/BondFragmentTE-Factors.dat (added) * tests/regression/Fragmentation/3/pre/test.conf (added) * tests/regression/Graph/1/post/test.conf (added) * tests/regression/Graph/1/pre/test.conf (added) * tests/regression/Simple_configuration/1/post/test.xyz (added) * tests/regression/Simple_configuration/2/post/test.conf (added) * tests/regression/Simple_configuration/2/post/test.conf.xyz (added) * tests/regression/Simple_configuration/2/pre/test.xyz (added) * tests/regression/Simple_configuration/3/post/test.conf (added) * tests/regression/Simple_configuration/3/post/test.conf.xyz (added) * tests/regression/Simple_configuration/4/post/test.conf (added) * tests/regression/Simple_configuration/4/post/test.conf.xyz (added) * tests/regression/Simple_configuration/4/pre/test.conf (added) * tests/regression/Simple_configuration/5/post/test.conf (added) * tests/regression/Simple_configuration/5/post/test.conf.xyz (added) * tests/regression/Simple_configuration/5/pre/test.conf (added) * tests/regression/Simple_configuration/6/pre/empty.conf (added) * tests/regression/Simple_configuration/7/pre/test.conf (added) * tests/regression/Tesselation/1/post/NonConvexEnvelope.dat (added) * tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (added) * tests/regression/Tesselation/1/post/test.conf (added) * tests/regression/Tesselation/1/pre/test.conf (added) * tests/regression/Tesselation/2/post/ConvexEnvelope.dat (added) * tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (added) * tests/regression/Tesselation/2/post/NonConvexEnvelope.dat (added) * tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (added) * tests/regression/Tesselation/2/post/test.conf (added) * tests/regression/Tesselation/2/pre/test.conf (added) * tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (added) * tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (added) * tests/regression/Tesselation/3/post/tecplot.phy (added) * tests/regression/Tesselation/3/post/test.conf (added) * tests/regression/Tesselation/3/pre/test.conf (added) * tests/regression/Tesselation/4/post/NonConvexEnvelope.dat (added) * tests/regression/Tesselation/4/post/NonConvexEnvelope.r3d (added) * tests/regression/Tesselation/4/post/test.conf (added) * tests/regression/Tesselation/4/pre/test.conf (added) * tests/testsuite.at (modified) Extended the testsuite to encompass the vital areas of molecuilder. ... Mon, 05 Oct 2009 17:21:58 GMT Frederik Heber [c26f44] * src/Makefile.am (modified) * src/atom.cpp (modified) * src/builder.cpp (modified) * src/memoryallocator.hpp (modified) * src/memoryusageobserver.cpp (modified) * src/memoryusageobserver.hpp (modified) * src/molecules.cpp (modified) * src/tesselation.cpp (modified) * src/tesselationunittest.cpp (modified) * tests/testsuite.at (modified) Fixed testsuite, removed some minor bugs. - ... Mon, 09 Feb 2009 17:24:10 GMT Frederik Heber [6ac7ee] * ChangeLog (modified) * Makefile.am (modified) * configure.ac (modified) * doc/Doxyfile (modified) * doc/Makefile.am (modified) * m4/ac_doxygen.m4 (modified) * m4/acx_compilerflags.m4 (modified) * src/.#border.cpp (deleted) * src/.#molecules.hpp (deleted) * src/Hbondangle.db (modified) * src/Hbonddistance.db (modified) * src/Makefile.am (modified) * src/analyzer.cpp (modified) * src/atom.cpp (modified) * src/bond.cpp (modified) * src/boundary.cpp (modified) * src/boundary.hpp (modified) * src/builder.cpp (modified) * src/config.cpp (modified) * src/datacreator.cpp (modified) * src/datacreator.hpp (modified) * src/defs.hpp (modified) * src/element.cpp (modified) * src/elements.db (modified) * src/ellipsoid.cpp (added) * src/ellipsoid.hpp (added) * src/graph.cpp (modified) * src/helpers.cpp (modified) * src/helpers.hpp (modified) * src/joiner.cpp (modified) * src/linkedcell.cpp (modified) * src/linkedcell.hpp (modified) * src/moleculelist.cpp (modified) * src/molecules.cpp (modified) * src/molecules.hpp (modified) * src/orbitals.db (modified) * src/parser.cpp (modified) * src/parser.hpp (modified) * src/periodentafel.cpp (modified) * src/periodentafel.hpp (modified) * src/stackclass.hpp (modified) * src/valence.db (modified) * src/vector.cpp (modified) * src/vector.hpp (modified) * src/verbose.cpp (modified) * tests/Makefile.am (modified) * tests/atlocal.in (modified) * tests/molecuilder.in (modified) * tests/testsuite.at (modified) Merge branch 'ConcaveHull' of ../espack2 into ConcaveHull ... Thu, 16 Oct 2008 09:27:59 GMT Frederik Heber [f00693] * tests/testsuite.at (modified) New tests that check that if subsequent arguments to certain cmd ... Mon, 18 Aug 2008 10:55:30 GMT Frederik Heber [ab3a0e] * tests/testsuite.at (modified) Fixed second test (main_pcp_linux was not written anymore, hence ... Mon, 26 May 2008 13:28:28 GMT Frederik Heber [37b5bb] * src/periodentafel.cpp (modified) * tests/testsuite.at (modified) renamed ElementsFileName to PathToDatabases, -e now gives path to ... Mon, 26 May 2008 13:21:19 GMT Frederik Heber [c9c643] * tests/testsuite.at (modified) fragmentation no more has various methods (dropped ... A) Tue, 29 Apr 2008 07:55:11 GMT Frederik Heber [1fa5b7] * tests/testsuite.at (modified) config file is again first argument and implemented test of ... Tue, 29 Apr 2008 07:06:18 GMT Frederik Heber [3c1dfb] * tests/testsuite.at (modified) Full test for fragmentation procedure with readin of the adjacency ... Sun, 27 Apr 2008 13:05:46 GMT Frederik Heber [f3cba6] * tests/Makefile.am (added) * tests/atlocal.in (added) * tests/molecuilder.in (added) * tests/testsuite.at (added) forgot to commit the actual autotest files listed during last commit, ...