#
# ChangeLog for src/Graph/CyclicStructureAnalysis.hpp
#
# Generated by Trac 1.4.4
# Jan 9, 2025, 3:47:15 PM

Wed, 20 Aug 2014 12:59:22 GMT Frederik Heber <heber@…> [83cc3e]
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.hpp (modified)

	FIX: CyclicStructureAnalysis did not robustly detect all cycles.

	- ...


Tue, 29 Apr 2014 12:42:43 GMT Frederik Heber <heber@…> [ec7511]
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.hpp (modified)
	* tests/Fragmentations/Fragmenting/anthracene/pre/anthracene.pdb (added)
	* tests/Fragmentations/Fragmenting/anthracene/testsuite-fragmenting-anthracene-order1.at (added)
	* tests/Fragmentations/Fragmenting/anthracene/testsuite-fragmenting-anthracene-order2.at (added)
	* tests/Fragmentations/Fragmenting/anthracene/testsuite-fragmenting-anthracene-order3.at (added)
	* tests/Fragmentations/Fragmenting/anthracene/testsuite-fragmenting-anthracene-order4.at (added)
	* tests/Fragmentations/Fragmenting/anthracene/testsuite-fragmenting-anthracene-order5.at (added)
	* tests/Fragmentations/Fragmenting/anthracene/testsuite-fragmenting-anthracene-order6.at (added)
	* tests/Fragmentations/Fragmenting/coronene/pre/coronene.pdb (added)
	* tests/Fragmentations/Fragmenting/coronene/testsuite-fragmenting-coronene-order1.at (added)
	* tests/Fragmentations/Fragmenting/coronene/testsuite-fragmenting-coronene-order2.at (added)
	* tests/Fragmentations/Fragmenting/coronene/testsuite-fragmenting-coronene-order3.at (added)
	* tests/Fragmentations/Fragmenting/coronene/testsuite-fragmenting-coronene-order4.at (added)
	* tests/Fragmentations/Fragmenting/coronene/testsuite-fragmenting-coronene-order5.at (added)
	* tests/Fragmentations/Fragmenting/coronene/testsuite-fragmenting-coronene-order6.at (added)
	* tests/Fragmentations/Fragmenting/naphthalene/pre/naphthalene.pdb (added)
	* tests/Fragmentations/Fragmenting/naphthalene/testsuite-fragmenting-naphthalene-order1.at (added)
	* tests/Fragmentations/Fragmenting/naphthalene/testsuite-fragmenting-naphthalene-order2.at (added)
	* tests/Fragmentations/Fragmenting/naphthalene/testsuite-fragmenting-naphthalene-order3.at (added)
	* tests/Fragmentations/Fragmenting/naphthalene/testsuite-fragmenting-naphthalene-order4.at (added)
	* tests/Fragmentations/Fragmenting/naphthalene/testsuite-fragmenting-naphthalene-order5.at (added)
	* tests/Fragmentations/Fragmenting/naphthalene/testsuite-fragmenting-naphthalene-order6.at (added)
	* tests/Fragmentations/Fragmenting/phenanthrene/pre/phenanthrene.pdb (added)
	* tests/Fragmentations/Fragmenting/phenanthrene/testsuite-fragmenting-phenanthrene-order1.at (added)
	* tests/Fragmentations/Fragmenting/phenanthrene/testsuite-fragmenting-phenanthrene-order2.at (added)
	* tests/Fragmentations/Fragmenting/phenanthrene/testsuite-fragmenting-phenanthrene-order3.at (added)
	* tests/Fragmentations/Fragmenting/phenanthrene/testsuite-fragmenting-phenanthrene-order4.at (added)
	* tests/Fragmentations/Fragmenting/phenanthrene/testsuite-fragmenting-phenanthrene-order5.at (added)
	* tests/Fragmentations/Fragmenting/phenanthrene/testsuite-fragmenting-phenanthrene-order6.at (added)
	* tests/Fragmentations/Makefile.am (modified)
	* tests/Fragmentations/testsuite.at (modified)

	FIX: CyclicStructureAnalysis falsely used DFS, skipped some cycles.
 ...


Mon, 14 Oct 2013 23:42:03 GMT Frederik Heber <heber@…> [fe0cb8]
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.def (modified)
	* src/Fragmentation/Fragmentation.cpp (modified)
	* src/Fragmentation/Fragmentation.hpp (modified)
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.hpp (modified)
	* tests/Python/AllActions/options.dat (modified)

	Added option DoCyclesFull to FragmentationAction.

	- FIX: ...


Mon, 14 Oct 2013 23:42:03 GMT Frederik Heber <heber@…> [8dbcaf]
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.hpp (modified)
	* src/Graph/DepthFirstSearchAnalysis.cpp (modified)

	FIX: CyclicStructureAnalysis did not work correctly.

	- many errors ...


Wed, 27 Feb 2013 12:42:36 GMT Frederik Heber <heber@…> [9291d04]
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.def (modified)
	* src/Actions/FragmentationAction/FragmentationAutomationAction.cpp (modified)
	* src/Actions/GraphAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/GraphAction/DepthFirstSearchAction.def (modified)
	* src/Fragmentation/BondsPerShortestPath.cpp (modified)
	* src/Fragmentation/BondsPerShortestPath.hpp (modified)
	* src/Fragmentation/Fragmentation.cpp (modified)
	* src/Fragmentation/Fragmentation.hpp (modified)
	* src/Fragmentation/HydrogenSaturation_enum.hpp (modified)
	* src/Fragmentation/PowerSetGenerator.cpp (modified)
	* src/Fragmentation/PowerSetGenerator.hpp (modified)
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.hpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_geometry.cpp (modified)
	* tests/Python/AllActions/options.dat (modified)

	Split saturation with hydrogen of treatment of hydrogen.

	- now ...


Thu, 17 Jan 2013 22:59:15 GMT Frederik Heber <heber@…> [88c8ec]
	* src/Actions/GraphAction/DepthFirstSearchAction.cpp (modified)
	* src/Atom/CopyAtoms/CopyAtoms_withBonds.cpp (modified)
	* src/Atom/atom_bondedparticle.cpp (modified)
	* src/Atom/atom_bondedparticle.hpp (modified)
	* src/Atom/atom_bondedparticleinfo.hpp (modified)
	* src/Atom/unittests/CopyAtomsInterfaceUnitTest.cpp (modified)
	* src/Bond/BondInfo.cpp (modified)
	* src/Bond/BondInfo.hpp (modified)
	* src/Bond/bond.cpp (modified)
	* src/Bond/bond.hpp (modified)
	* src/Fragmentation/BondsPerShortestPath.cpp (modified)
	* src/Fragmentation/PowerSetGenerator.cpp (modified)
	* src/Fragmentation/PowerSetGenerator.hpp (modified)
	* src/Graph/BondGraph.hpp (modified)
	* src/Graph/BreadthFirstSearchAdd.cpp (modified)
	* src/Graph/BreadthFirstSearchAdd.hpp (modified)
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.hpp (modified)
	* src/Graph/DepthFirstSearchAnalysis.cpp (modified)
	* src/Graph/DepthFirstSearchAnalysis.hpp (modified)
	* src/Parser/Psi3Parser.cpp (modified)
	* src/Tesselation/boundary.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/unittests/ListOfBondsUnitTest.cpp (modified)

	REFACTOR: Replaced all "bond *" appearances by bond::ptr.

	- this is ...


Wed, 26 Oct 2011 15:02:53 GMT Frederik Heber <heber@…> [07a47e]
	* configure.ac (modified)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.def (modified)
	* src/Actions/GraphAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/GraphAction/DepthFirstSearchAction.def (modified)
	* src/Fragmentation/BondsPerShortestPath.cpp (modified)
	* src/Fragmentation/BondsPerShortestPath.hpp (modified)
	* src/Fragmentation/Fragmentation.cpp (modified)
	* src/Fragmentation/Fragmentation.hpp (modified)
	* src/Fragmentation/HydrogenSaturation_enum.hpp (added)
	* src/Fragmentation/PowerSetGenerator.cpp (modified)
	* src/Fragmentation/PowerSetGenerator.hpp (modified)
	* src/Graph/BreadthFirstSearchAdd.cpp (modified)
	* src/Graph/BreadthFirstSearchAdd.hpp (modified)
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.hpp (modified)
	* src/MoleculeLeafClass.cpp (modified)
	* src/MoleculeLeafClass.hpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/moleculelist.cpp (modified)

	Replaced enable/disable-hydrogen by internal switch.

	- changes in ...


Wed, 02 Mar 2011 21:53:08 GMT Frederik Heber <heber@…> [e73ad9a]
	* src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Graph/CyclicStructureAnalysis.cpp (added)
	* src/Graph/CyclicStructureAnalysis.hpp (added)
	* src/Graph/Makefile.am (modified)
	* src/Makefile.am (modified)
	* src/molecule.hpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_graph.cpp (modified)

	Moved CyclicStructureAnalysis from molecule_graph.cpp into own ...