#
# ChangeLog for src/Graph/AdjacencyList.cpp
#
# Generated by Trac 1.4.4
# Jan 10, 2025, 3:21:41 PM

Fri, 24 Jul 2015 16:44:34 GMT Frederik Heber <heber@…> [f01769]
	* src/Actions/AtomAction/ChangeElementAction.cpp (modified)
	* src/Actions/FillAction/FillRegularGridAction.cpp (modified)
	* src/Actions/FillAction/FillSurfaceAction.cpp (modified)
	* src/Actions/FillAction/SuspendInMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/RemoveAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AtomByOrderAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAtomByOrderAction.cpp (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.cpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.def (modified)
	* src/Analysis/analysis_bonds.cpp (modified)
	* src/Analysis/analysis_correlation.cpp (modified)
	* src/Atom/AtomSet.hpp (modified)
	* src/Atom/atom_bondedparticle.cpp (modified)
	* src/Atom/atom_bondedparticle.hpp (modified)
	* src/AtomIdSet.cpp (modified)
	* src/AtomIdSet.hpp (modified)
	* src/Bond/BondInfo.cpp (modified)
	* src/Descriptors/unittests/AtomDescriptorUnitTest.cpp (modified)
	* src/Filling/unittests/ClusterUnitTest.cpp (modified)
	* src/Fragmentation/Fragmentation.cpp (modified)
	* src/Fragmentation/Graph.cpp (modified)
	* src/Fragmentation/Homology/HomologyGraph_getFromKeyset.cpp (modified)
	* src/Graph/AdjacencyList.cpp (modified)
	* src/Graph/BuildInducedSubgraph.cpp (modified)
	* src/Graph/BuildInducedSubgraph.hpp (modified)
	* src/Parameters/Specifics/Value_molecule.cpp (modified)
	* src/Parameters/StreamOperators.hpp (modified)
	* src/Parameters/Validators/Specific/AtomIdValidator.cpp (modified)
	* src/Parser/PdbParser.cpp (modified)
	* src/Parser/unittests/ParserTremoloUnitTest.cpp (modified)
	* src/Tesselation/boundary.cpp (modified)
	* src/UIElements/CommandLineUI/Query/AtomCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/AtomsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/MoleculeCommandLineQuery.cpp (modified)
	* src/UIElements/Qt4/Query/AtomQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/MoleculeQtQuery.cpp (modified)
	* src/UIElements/TextUI/Query/AtomTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/AtomsTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/MoleculeTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/MoleculesTextQuery.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified)
	* src/UIElements/Views/Qt4/QtFragmentList.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/unittests/AtomIdSetUnitTest.cpp (modified)

	Replaced World::getAtom() wherever possible by const version.

	- ...


Fri, 09 Aug 2013 14:26:27 GMT Frederik Heber <heber@…> [abb641]
	* src/Graph/AdjacencyList.cpp (modified)

	FIX: AdjacencyList missed atoms without bonds.

	- this caused an ...


Sun, 24 Feb 2013 12:59:18 GMT Frederik Heber <heber@…> [b6b5b8]
	* src/Graph/AdjacencyList.cpp (modified)

	FIX: Removed Assert of parsable file in AdjacencyList cstor.


Mon, 03 Dec 2012 09:50:01 GMT Frederik Heber <heber@…> [3aa8a5]
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified)
	* src/Atom/atom_bondedparticle.cpp (modified)
	* src/Atom/atom_bondedparticle.hpp (modified)
	* src/Fragmentation/Fragmentation.cpp (modified)
	* src/Fragmentation/fragmentation_helpers.cpp (modified)
	* src/Graph/AdjacencyList.cpp (modified)
	* src/Graph/AdjacencyList.hpp (modified)
	* src/Graph/unittests/AdjacencyListUnitTest.cpp (modified)
	* src/Graph/unittests/AdjacencyListUnitTest.hpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_graph.cpp (modified)
	* tests/regression/Fragmentation/FragmentMolecule-MaxOrder/testsuite-fragmentation-fragment-molecule-maxorder.at (modified)
	* tests/regression/Molecules/SaveAdjacency/post/test.adj (modified)

	REFACTOR: AdjacencyList now just contains a single internal map.

	- ...


Mon, 03 Dec 2012 09:50:01 GMT Frederik Heber <heber@…> [5197e5]
	* src/Graph/AdjacencyList.cpp (modified)
	* src/Graph/AdjacencyList.hpp (modified)
	* src/Graph/unittests/AdjacencyListUnitTest.cpp (modified)
	* src/Graph/unittests/AdjacencyListUnitTest.hpp (modified)

	REFACTOR: AdjacencyList's map creations may now create either map.
 ...


Mon, 03 Dec 2012 09:50:01 GMT Frederik Heber <heber@…> [0fad93]
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Fragmentation/Fragmentation.cpp (modified)
	* src/Fragmentation/Fragmentation.hpp (modified)
	* src/Graph/AdjacencyList.cpp (moved)
	* src/Graph/AdjacencyList.hpp (moved)
	* src/Graph/Makefile.am (modified)
	* src/Graph/unittests/AdjacencyListUnitTest.cpp (moved)
	* src/Graph/unittests/AdjacencyListUnitTest.hpp (moved)
	* src/Graph/unittests/Makefile.am (modified)

	Renamed CheckAgainstAdjacencyFile -> AdjacencyList.

	- operator() is ...