# # ChangeLog for src/Fragmentation # # Generated by Trac 1.4.4 # Dec 27, 2024, 10:22:25 PM Mon, 03 Dec 2012 09:49:05 GMT Frederik Heber [e554d0] * src/Dynamics/LinearInterpolationBetweenSteps.hpp (modified) * src/Fragmentation/Fragmentation.cpp (modified) * src/MoleculeListClass.hpp (modified) * src/moleculelist.cpp (modified) Removed SortIndex as (unused) parameter in ... Mon, 03 Dec 2012 09:48:50 GMT Frederik Heber [d4d7a1] * src/Dynamics/LinearInterpolationBetweenSteps.hpp (modified) * src/Fragmentation/Fragmentation.cpp (modified) * src/Fragmentation/Fragmentation.hpp (modified) * src/MoleculeListClass.hpp (modified) * src/moleculelist.cpp (modified) SortIndex is now a map. - SortIndex is used for giving forces in ... Fri, 26 Oct 2012 13:24:01 GMT Frederik Heber [ed9da4] * src/Fragmentation/Fragmentation.cpp (modified) * src/Fragmentation/Mask.hpp (modified) Replaced OrderArray and MaxArray arrays in ... Fri, 26 Oct 2012 13:24:01 GMT Frederik Heber [f7307f] * src/Fragmentation/Fragmentation.cpp (modified) * src/Fragmentation/Fragmentation.hpp (modified) Using ListOfLocalAtoms_t now also as SonList. Fri, 26 Oct 2012 13:24:01 GMT Frederik Heber [f96874] * src/Fragmentation/AdaptivityMap.cpp (modified) * src/Fragmentation/AdaptivityMap.hpp (modified) * src/Fragmentation/AtomMask.hpp (added) * src/Fragmentation/Fragmentation.cpp (modified) * src/Fragmentation/Fragmentation.hpp (modified) * src/Fragmentation/Makefile.am (modified) * src/Fragmentation/Mask.hpp (added) * src/Fragmentation/MoleculeMask.hpp (added) * src/Fragmentation/fragmentation_helpers.cpp (modified) * src/Fragmentation/fragmentation_helpers.hpp (modified) * src/MoleculeLeafClass.cpp (modified) * src/MoleculeLeafClass.hpp (modified) AtomMask is now a set, inherited into own class. - this is ... Fri, 26 Oct 2012 13:24:01 GMT Frederik Heber [6d551c] * src/Actions/GraphAction/DepthFirstSearchAction.cpp (modified) * src/Fragmentation/Fragmentation.cpp (modified) * src/Graph/DepthFirstSearchAnalysis.cpp (modified) * src/Graph/DepthFirstSearchAnalysis.hpp (modified) * src/Graph/ListOfLocalAtoms.hpp (added) * src/Graph/Makefile.am (modified) * src/MoleculeLeafClass.cpp (modified) * src/MoleculeLeafClass.hpp (modified) * src/molecule.hpp (modified) * src/molecule_graph.cpp (modified) ListOfLocalAtoms is now a map, inherited into a distinct class. - ... Wed, 26 Sep 2012 17:24:47 GMT Frederik Heber [b8f64f] * src/Fragmentation/fragmentation_helpers.cpp (modified) FIX: Fixed printing of AtomMask. Wed, 26 Sep 2012 17:24:47 GMT Frederik Heber [94d5ac6] * LinearAlgebra/src/LinearAlgebra/BoxVector.cpp (modified) * LinearAlgebra/src/LinearAlgebra/Line.cpp (modified) * LinearAlgebra/src/LinearAlgebra/LinePoint.cpp (modified) * LinearAlgebra/src/LinearAlgebra/LineSegment.cpp (modified) * LinearAlgebra/src/LinearAlgebra/LineSegmentSet.cpp (modified) * LinearAlgebra/src/LinearAlgebra/LinearSystemOfEquations.cpp (modified) * LinearAlgebra/src/LinearAlgebra/MatrixContent.cpp (modified) * LinearAlgebra/src/LinearAlgebra/MatrixVector_ops.cpp (modified) * LinearAlgebra/src/LinearAlgebra/Plane.cpp (modified) * LinearAlgebra/src/LinearAlgebra/RealSpaceMatrix.cpp (modified) * LinearAlgebra/src/LinearAlgebra/Space.cpp (modified) * LinearAlgebra/src/LinearAlgebra/Vector.cpp (modified) * LinearAlgebra/src/LinearAlgebra/VectorContent.cpp (modified) * LinearAlgebra/src/LinearAlgebra/VectorInterface.cpp (modified) * LinearAlgebra/src/LinearAlgebra/leastsquaremin.cpp (modified) * LinearAlgebra/src/LinearAlgebra/vector_ops.cpp (modified) * LinearAlgebra/src/unittests/LineUnitTest.cpp (modified) * LinearAlgebra/src/unittests/LinearSystemOfEquationsUnitTest.cpp (modified) * LinearAlgebra/src/unittests/MatrixContentSymmetricUnitTest.cpp (modified) * LinearAlgebra/src/unittests/MatrixContentUnitTest.cpp (modified) * LinearAlgebra/src/unittests/PlaneUnitTest.cpp (modified) * LinearAlgebra/src/unittests/RealSpaceMatrixUnitTest.cpp (modified) * LinearAlgebra/src/unittests/TestRunnerMain.cpp (modified) * LinearAlgebra/src/unittests/UnitTestMain.cpp (modified) * LinearAlgebra/src/unittests/VectorContentUnitTest.cpp (modified) * LinearAlgebra/src/unittests/VectorSetUnitTest.cpp (modified) * LinearAlgebra/src/unittests/VectorUnitTest.cpp (modified) * src/Actions/Action.cpp (modified) * src/Actions/ActionHistory.cpp (modified) * src/Actions/ActionRegistry.cpp (modified) * src/Actions/ActionSequence.cpp (modified) * src/Actions/ActionTrait.cpp (modified) * src/Actions/AnalysisAction/CalculateBoundingBoxAction.cpp (modified) * src/Actions/AnalysisAction/CalculateCellVolumeAction.cpp (modified) * src/Actions/AnalysisAction/CalculateMolarMassAction.cpp (modified) * src/Actions/AnalysisAction/DipoleAngularCorrelationAction.cpp (modified) * src/Actions/AnalysisAction/DipoleCorrelationAction.cpp (modified) * src/Actions/AnalysisAction/MolecularVolumeAction.cpp (modified) * src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified) * src/Actions/AnalysisAction/PointCorrelationAction.cpp (modified) * src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp (modified) * src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (modified) * src/Actions/AtomAction/AddAction.cpp (modified) * src/Actions/AtomAction/ChangeElementAction.cpp (modified) * src/Actions/AtomAction/RemoveAction.cpp (modified) * src/Actions/AtomAction/RotateAroundOriginByAngleAction.cpp (modified) * src/Actions/AtomAction/SaveSelectedAtomsAction.cpp (modified) * src/Actions/AtomAction/TranslateAction.cpp (modified) * src/Actions/CommandAction/BondLengthTableAction.cpp (modified) * src/Actions/CommandAction/ElementDbAction.cpp (modified) * src/Actions/CommandAction/FastParsingAction.cpp (modified) * src/Actions/CommandAction/HelpAction.cpp (modified) * src/Actions/CommandAction/HelpRedistributeAction.cpp (added) * src/Actions/CommandAction/HelpRedistributeAction.def (added) * src/Actions/CommandAction/HelpRedistributeAction.hpp (added) * src/Actions/CommandAction/VerboseAction.cpp (modified) * src/Actions/CommandAction/VersionAction.cpp (modified) * src/Actions/CommandAction/WarrantyAction.cpp (modified) * src/Actions/ErrorAction.cpp (modified) * src/Actions/FillAction/FillRegularGridAction.cpp (modified) * src/Actions/FillAction/FillSphericalSurfaceAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAutomationAction.cpp (modified) * src/Actions/GlobalListOfActions.hpp (modified) * src/Actions/GraphAction/CreateAdjacencyAction.cpp (modified) * src/Actions/GraphAction/DepthFirstSearchAction.cpp (modified) * src/Actions/GraphAction/SubgraphDissectionAction.cpp (modified) * src/Actions/Makefile.am (modified) * src/Actions/MakroAction.cpp (modified) * src/Actions/ManipulateAtomsProcess.cpp (modified) * src/Actions/MethodAction.cpp (modified) * src/Actions/MoleculeAction/BondFileAction.cpp (modified) * src/Actions/MoleculeAction/ChangeNameAction.cpp (modified) * src/Actions/MoleculeAction/CopyAction.cpp (modified) * src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp (modified) * src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified) * src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (modified) * src/Actions/MoleculeAction/LoadAction.cpp (modified) * src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp (modified) * src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp (modified) * src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified) * src/Actions/MoleculeAction/SaveBondsAction.cpp (modified) * src/Actions/MoleculeAction/SaveSelectedMoleculesAction.cpp (modified) * src/Actions/MoleculeAction/SaveTemperatureAction.cpp (modified) * src/Actions/MoleculeAction/SuspendInWaterAction.cpp (modified) * src/Actions/MoleculeAction/VerletIntegrationAction.cpp (modified) * src/Actions/OptionRegistry.cpp (modified) * src/Actions/OptionTrait.cpp (modified) * src/Actions/ParserAction/ParseTremoloPotentialsAction.cpp (modified) * src/Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.cpp (modified) * src/Actions/ParserAction/SetOutputFormatsAction.cpp (modified) * src/Actions/ParserAction/SetParserParametersAction.cpp (modified) * src/Actions/ParserAction/SetTremoloAtomdataAction.cpp (modified) * src/Actions/Process.cpp (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.cpp (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp (modified) * src/Actions/RedoAction.cpp (modified) * src/Actions/SelectionAction/Atoms/AllAtomsAction.cpp (modified) * src/Actions/SelectionAction/Atoms/AllAtomsInsideCuboidAction.cpp (modified) * src/Actions/SelectionAction/Atoms/AllAtomsInsideSphereAction.cpp (modified) * src/Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.cpp (modified) * src/Actions/SelectionAction/Atoms/AtomByElementAction.cpp (modified) * src/Actions/SelectionAction/Atoms/AtomByIdAction.cpp (modified) * src/Actions/SelectionAction/Atoms/AtomByOrderAction.cpp (modified) * src/Actions/SelectionAction/Atoms/ClearAllAtomsAction.cpp (modified) * src/Actions/SelectionAction/Atoms/InvertAtomsAction.cpp (modified) * src/Actions/SelectionAction/Atoms/NotAllAtomsAction.cpp (modified) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideCuboidAction.cpp (modified) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideSphereAction.cpp (modified) * src/Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.cpp (modified) * src/Actions/SelectionAction/Atoms/NotAtomByElementAction.cpp (modified) * src/Actions/SelectionAction/Atoms/NotAtomByIdAction.cpp (modified) * src/Actions/SelectionAction/Atoms/NotAtomByOrderAction.cpp (modified) * src/Actions/SelectionAction/Molecules/AllMoleculesAction.cpp (modified) * src/Actions/SelectionAction/Molecules/ClearAllMoleculesAction.cpp (modified) * src/Actions/SelectionAction/Molecules/InvertMoleculesAction.cpp (modified) * src/Actions/SelectionAction/Molecules/MoleculeByFormulaAction.cpp (modified) * src/Actions/SelectionAction/Molecules/MoleculeByIdAction.cpp (modified) * src/Actions/SelectionAction/Molecules/MoleculeByNameAction.cpp (modified) * src/Actions/SelectionAction/Molecules/MoleculeByOrderAction.cpp (modified) * src/Actions/SelectionAction/Molecules/MoleculeOfAtomAction.cpp (modified) * src/Actions/SelectionAction/Molecules/NotAllMoleculesAction.cpp (modified) * src/Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.cpp (modified) * src/Actions/SelectionAction/Molecules/NotMoleculeByIdAction.cpp (modified) * src/Actions/SelectionAction/Molecules/NotMoleculeByNameAction.cpp (modified) * src/Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.cpp (modified) * src/Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.cpp (modified) * src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified) * src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified) * src/Actions/UndoAction.cpp (modified) * src/Actions/UndoRedoHelpers.cpp (modified) * src/Actions/Values.cpp (modified) * src/Actions/WorldAction/AddEmptyBoundaryAction.cpp (modified) * src/Actions/WorldAction/BoundInBoxAction.cpp (modified) * src/Actions/WorldAction/CenterInBoxAction.cpp (modified) * src/Actions/WorldAction/CenterOnEdgeAction.cpp (modified) * src/Actions/WorldAction/ChangeBoxAction.cpp (modified) * src/Actions/WorldAction/InputAction.cpp (modified) * src/Actions/WorldAction/OutputAction.cpp (modified) * src/Actions/WorldAction/OutputAsAction.cpp (modified) * src/Actions/WorldAction/RepeatBoxAction.cpp (modified) * src/Actions/WorldAction/ScaleBoxAction.cpp (modified) * src/Actions/WorldAction/SetBoundaryConditionsAction.cpp (modified) * src/Actions/WorldAction/SetDefaultNameAction.cpp (modified) * src/Actions/WorldAction/SetWorldTimeAction.cpp (modified) * src/Actions/pyMoleCuilder.cpp (modified) * src/Actions/unittests/ActionRegistryUnitTest.cpp (modified) * src/Actions/unittests/ActionSequenceUnitTest.cpp (modified) * src/Actions/unittests/AtomsCalculationUnitTest.cpp (modified) * src/Actions/unittests/ManipulateAtomsUnitTest.cpp (modified) * src/Analysis/analysis_bonds.cpp (modified) * src/Analysis/analysis_correlation.cpp (modified) * src/Analysis/unittests/AnalysisBondsUnitTest.cpp (modified) * src/Analysis/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified) * src/Analysis/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified) * src/Analysis/unittests/AnalysisPairCorrelationUnitTest.cpp (modified) * src/Analysis/unittests/CountBondsUnitTest.cpp (modified) * src/Atom/AtomObserver.cpp (modified) * src/Atom/AtomicInfo.cpp (modified) * src/Atom/CopyAtoms/CopyAtoms_SaturateDanglingBonds.cpp (modified) * src/Atom/CopyAtoms/CopyAtoms_withBonds.cpp (modified) * src/Atom/TesselPoint.cpp (modified) * src/Atom/atom.cpp (modified) * src/Atom/atom_atominfo.cpp (modified) * src/Atom/atom_bondedparticle.cpp (modified) * src/Atom/atom_bondedparticleinfo.cpp (modified) * src/Atom/atom_graphnode.cpp (modified) * src/Atom/atom_graphnodeinfo.cpp (modified) * src/Atom/atom_observable.cpp (modified) * src/Atom/atom_particleinfo.cpp (modified) * src/Atom/unittests/AtomObserverUnitTest.cpp (modified) * src/Atom/unittests/CopyAtomsInterfaceUnitTest.cpp (modified) * src/AtomIdSet.cpp (modified) * src/Bond/BondInfo.cpp (modified) * src/Bond/GraphEdge.cpp (modified) * src/Bond/bond.cpp (modified) * src/Bond/bond_observable.cpp (modified) * src/Box.cpp (modified) * src/Box_BoundaryConditions.cpp (modified) * src/ControllerOptions_MPQCCommandJob.cpp (modified) * src/Descriptors/AtomDescriptor.cpp (modified) * src/Descriptors/AtomIdDescriptor.cpp (modified) * src/Descriptors/AtomOfMoleculeDescriptor.cpp (modified) * src/Descriptors/AtomOfMoleculeSelectionDescriptor.cpp (modified) * src/Descriptors/AtomOrderDescriptor.cpp (modified) * src/Descriptors/AtomSelectionDescriptor.cpp (modified) * src/Descriptors/AtomShapeDescriptor.cpp (modified) * src/Descriptors/AtomTypeDescriptor.cpp (modified) * src/Descriptors/AtomsWithinDistanceOfDescriptor.cpp (modified) * src/Descriptors/MoleculeDescriptor.cpp (modified) * src/Descriptors/MoleculeFormulaDescriptor.cpp (modified) * src/Descriptors/MoleculeIdDescriptor.cpp (modified) * src/Descriptors/MoleculeNameDescriptor.cpp (modified) * src/Descriptors/MoleculeOfAtomSelectionDescriptor.cpp (modified) * src/Descriptors/MoleculeOrderDescriptor.cpp (modified) * src/Descriptors/MoleculePtrDescriptor.cpp (modified) * src/Descriptors/MoleculeSelectionDescriptor.cpp (modified) * src/Descriptors/unittests/AtomDescriptorUnitTest.cpp (modified) * src/Descriptors/unittests/MoleculeDescriptorUnitTest.cpp (modified) * src/Dynamics/MinimiseConstrainedPotential.cpp (modified) * src/Element/element.cpp (modified) * src/Element/elements_db.cpp (modified) * src/Element/periodentafel.cpp (modified) * src/Element/unittests/ElementUnitTest.cpp (modified) * src/Element/unittests/PeriodentafelUnitTest.cpp (modified) * src/Filling/Cluster.cpp (modified) * src/Filling/Filler.cpp (modified) * src/Filling/Generators/NodeGenerator.cpp (modified) * src/Filling/Inserter/Inserter.cpp (modified) * src/Filling/Inserter/RandomInserter.cpp (modified) * src/Filling/Inserter/SimpleInserter.cpp (modified) * src/Filling/Inserter/SurfaceInserter.cpp (modified) * src/Filling/Mesh/CubeMesh.cpp (modified) * src/Filling/Mesh/Mesh.cpp (modified) * src/Filling/Predicates/AnyFillPredicate.cpp (modified) * src/Filling/Predicates/FillPredicate.cpp (modified) * src/Filling/Predicates/IsInsideDomain_FillPredicate.cpp (modified) * src/Filling/Predicates/IsInsideSurface_FillPredicate.cpp (modified) * src/Filling/Predicates/IsValidInDomain_FillPredicate.cpp (modified) * src/Filling/Predicates/IsVoidNode_FillPredicate.cpp (modified) * src/Filling/Predicates/Ops_FillPredicate.cpp (modified) * src/Filling/unittests/ClusterUnitTest.cpp (modified) * src/Filling/unittests/FillerUnitTest.cpp (modified) * src/Filling/unittests/IsInsideDomain_FillPredicateUnitTest.cpp (modified) * src/Filling/unittests/IsInsideSurface_FillPredicateUnitTest.cpp (modified) * src/Filling/unittests/IsValidInDomain_FillPredicateUnitTest.cpp (modified) * src/Filling/unittests/IsVoidNode_FillPredicateUnitTest.cpp (modified) * src/Filling/unittests/Ops_FillPredicateUnitTest.cpp (modified) * src/Formula.cpp (modified) * src/Fragmentation/AdaptivityMap.cpp (modified) * src/Fragmentation/BondsPerShortestPath.cpp (modified) * src/Fragmentation/EnergyMatrix.cpp (modified) * src/Fragmentation/ForceMatrix.cpp (modified) * src/Fragmentation/Fragmentation.cpp (modified) * src/Fragmentation/Graph.cpp (modified) * src/Fragmentation/HessianMatrix.cpp (modified) * src/Fragmentation/KeySet.cpp (modified) * src/Fragmentation/KeySetsContainer.cpp (modified) * src/Fragmentation/MatrixContainer.cpp (modified) * src/Fragmentation/PowerSetGenerator.cpp (modified) * src/Fragmentation/UniqueFragments.cpp (modified) * src/Fragmentation/analyzer.cpp (modified) * src/Fragmentation/datacreator.cpp (modified) * src/Fragmentation/fragmentation_helpers.cpp (modified) * src/Fragmentation/helpers.cpp (modified) * src/Fragmentation/joiner.cpp (modified) * src/Fragmentation/unittests/KeySetsContainerUnitTest.cpp (modified) * src/Fragmentation/unittests/MatrixContainerUnitTest.cpp (modified) * src/Graph/BondGraph.cpp (modified) * src/Graph/BreadthFirstSearchAdd.cpp (modified) * src/Graph/BuildInducedSubgraph.cpp (modified) * src/Graph/CheckAgainstAdjacencyFile.cpp (modified) * src/Graph/ConnectedSubgraph.cpp (modified) * src/Graph/CyclicStructureAnalysis.cpp (modified) * src/Graph/DepthFirstSearchAnalysis.cpp (modified) * src/Graph/unittests/BondGraphUnitTest.cpp (modified) * src/Graph/unittests/CheckAgainstAdjacencyFileUnitTest.cpp (modified) * src/Helpers/defs.cpp (modified) * src/Jobs/MPQCCommandJob.cpp (modified) * src/Jobs/MPQCCommandJob_MPQCData.cpp (modified) * src/Jobs/unittests/MPQCCommandJobUnitTest.cpp (modified) * src/Jobs/unittests/MPQCDataUnitTest.cpp (modified) * src/LinkedCell/LinkedCell.cpp (modified) * src/LinkedCell/LinkedCell_Controller.cpp (modified) * src/LinkedCell/LinkedCell_Model.cpp (modified) * src/LinkedCell/LinkedCell_Model_LinkedCellArrayCache.cpp (modified) * src/LinkedCell/LinkedCell_Model_Update.cpp (modified) * src/LinkedCell/LinkedCell_Model_changeModel.cpp (modified) * src/LinkedCell/LinkedCell_View.cpp (modified) * src/LinkedCell/linkedcell.cpp (modified) * src/LinkedCell/tripleIndex.cpp (modified) * src/LinkedCell/unittests/LinkedCellUnitTest.cpp (modified) * src/LinkedCell/unittests/LinkedCell_ControllerUnitTest.cpp (modified) * src/LinkedCell/unittests/LinkedCell_ModelUnitTest.cpp (modified) * src/LinkedCell/unittests/LinkedCell_ViewUnitTest.cpp (modified) * src/LinkedCell/unittests/linkedcellUnitTest.cpp (modified) * src/LinkedCell/unittests/stubs/AtomObserverStub.cpp (modified) * src/LinkedCell/unittests/stubs/ObserverBoxStub.cpp (modified) * src/LinkedCell/unittests/stubs/TesselPointStub.cpp (modified) * src/LinkedCell/unittests/stubs/WorldTimeStub.cpp (modified) * src/MoleculeLeafClass.cpp (modified) * src/Parameters/Validators/Specific/ActionNameValidator.cpp (modified) * src/Parameters/Validators/Specific/AtomDataValidator.cpp (modified) * src/Parameters/Validators/Specific/AtomIdValidator.cpp (modified) * src/Parameters/Validators/Specific/BoundaryConditionValidator.cpp (modified) * src/Parameters/Validators/Specific/BoxLengthValidator.cpp (modified) * src/Parameters/Validators/Specific/BoxVectorValidator.cpp (modified) * src/Parameters/Validators/Specific/FileSuffixValidator.cpp (modified) * src/Parameters/Validators/Specific/FormulaValidator.cpp (modified) * src/Parameters/Validators/Specific/KeyValueValidator.cpp (modified) * src/Parameters/Validators/Specific/MoleculeIdValidator.cpp (modified) * src/Parameters/Validators/Specific/ParserFileValidator.cpp (modified) * src/Parameters/Validators/Specific/ParserTypeValidator.cpp (modified) * src/Parameters/Validators/Specific/RandomNumberValidators.cpp (modified) * src/Parameters/Validators/Specific/RealSpaceMatrixInvertibleValidator.cpp (modified) * src/Parameters/Validators/Specific/RealSpaceMatrixSymmetricValidator.cpp (modified) * src/Parameters/Validators/Specific/TimeStepPresentValidator.cpp (modified) * src/Parameters/Validators/Specific/VectorNotZeroValidator.cpp (modified) * src/Parameters/Validators/Specific/VectorPositiveComponentsValidator.cpp (modified) * src/Parameters/Validators/Specific/VectorZeroOneComponentsValidator.cpp (modified) * src/Parameters/unittests/ContinuousParameterTest.cpp (modified) * src/Parameters/unittests/ContinuousValueTest.cpp (modified) * src/Parameters/unittests/DiscreteParameterTest.cpp (modified) * src/Parameters/unittests/DiscreteValueTest.cpp (modified) * src/Parameters/unittests/Ops_ValidatorTest.cpp (modified) * src/Parameters/unittests/stubs/ActionNameValidatorStub.cpp (modified) * src/Parameters/unittests/stubs/BoxLengthValidatorStub.cpp (modified) * src/Parameters/unittests/stubs/BoxVectorValidatorStub.cpp (modified) * src/Parameters/unittests/stubs/TimeStepPresentValidatorStub.cpp (modified) * src/Parser/ChangeTracker.cpp (modified) * src/Parser/ConfigFileBuffer.cpp (modified) * src/Parser/FormatParserStorage.cpp (modified) * src/Parser/FormatParser_Parameters.cpp (modified) * src/Parser/FormatParser_common.cpp (modified) * src/Parser/MpqcParser.cpp (modified) * src/Parser/MpqcParser_Parameters.cpp (modified) * src/Parser/MpqcParser_Parameters_initBasis.cpp (modified) * src/Parser/Parameters/ParameterStorage.cpp (modified) * src/Parser/Parameters/unittests/ParameterStorageUnitTest.cpp (modified) * src/Parser/Parameters/unittests/StringParameterUnitTest.cpp (modified) * src/Parser/ParserTypes.cpp (modified) * src/Parser/PcpParser.cpp (modified) * src/Parser/PcpParser_helper.cpp (modified) * src/Parser/PdbAtomInfoContainer.cpp (modified) * src/Parser/PdbParser.cpp (modified) * src/Parser/Psi3Parser.cpp (modified) * src/Parser/Psi3Parser_Parameters.cpp (modified) * src/Parser/TremoloAtomInfoContainer.cpp (modified) * src/Parser/TremoloParser.cpp (modified) * src/Parser/TremoloParser_ElementKeys.cpp (modified) * src/Parser/XmlParser.cpp (modified) * src/Parser/XyzParser.cpp (modified) * src/Parser/unittests/ParserMpqcUnitTest.cpp (modified) * src/Parser/unittests/ParserPcpUnitTest.cpp (modified) * src/Parser/unittests/ParserPdbUnitTest.cpp (modified) * src/Parser/unittests/ParserPsi3UnitTest.cpp (modified) * src/Parser/unittests/ParserTremoloUnitTest.cpp (modified) * src/Parser/unittests/ParserTremolo_ElementKeysUnitTest.cpp (modified) * src/Parser/unittests/ParserXmlUnitTest.cpp (modified) * src/Parser/unittests/ParserXyzUnitTest.cpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.cpp (modified) * src/RandomNumbers/RandomNumberDistribution_Encapsulation.cpp (modified) * src/RandomNumbers/RandomNumberDistribution_Parameters.cpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.cpp (modified) * src/RandomNumbers/RandomNumberEngine_Encapsulation.cpp (modified) * src/RandomNumbers/RandomNumberEngine_Parameters.cpp (modified) * src/RandomNumbers/RandomNumberGenerator.cpp (modified) * src/RandomNumbers/RandomNumberGeneratorFactory.cpp (modified) * src/RandomNumbers/unittests/RandomNumberDistributionFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberEngineFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberGeneratorFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberGeneratorUnitTest.cpp (modified) * src/Server.cpp (modified) * src/Shapes/BaseShapes.cpp (modified) * src/Shapes/Shape.cpp (modified) * src/Shapes/ShapeOps.cpp (modified) * src/Shapes/unittests/BaseShapesUnitTest.cpp (modified) * src/Shapes/unittests/ShapeOpsUnitTest.cpp (modified) * src/Shapes/unittests/Shape_HomogeneousPointsUnitTest.cpp (modified) * src/Shapes/unittests/stubs/ApproximateShapeAreaStub.cpp (modified) * src/Shapes/unittests/stubs/ApproximateShapeVolumeStub.cpp (modified) * src/Tesselation/ApproximateShapeArea.cpp (modified) * src/Tesselation/ApproximateShapeVolume.cpp (modified) * src/Tesselation/BoundaryLineSet.cpp (modified) * src/Tesselation/BoundaryPointSet.cpp (modified) * src/Tesselation/BoundaryPolygonSet.cpp (modified) * src/Tesselation/BoundaryTriangleSet.cpp (modified) * src/Tesselation/CandidateForTesselation.cpp (modified) * src/Tesselation/boundary.cpp (modified) * src/Tesselation/ellipsoid.cpp (modified) * src/Tesselation/tesselation.cpp (modified) * src/Tesselation/tesselationhelpers.cpp (modified) * src/Tesselation/triangleintersectionlist.cpp (modified) * src/Tesselation/unittests/TesselationUnitTest.cpp (modified) * src/Tesselation/unittests/Tesselation_BoundaryTriangleUnitTest.cpp (modified) * src/Tesselation/unittests/Tesselation_InsideOutsideUnitTest.cpp (modified) * src/Thermostats/Berendsen.cpp (modified) * src/Thermostats/GaussianThermostat.cpp (modified) * src/Thermostats/Langevin.cpp (modified) * src/Thermostats/NoThermostat.cpp (modified) * src/Thermostats/NoseHoover.cpp (modified) * src/Thermostats/ThermoStatContainer.cpp (modified) * src/Thermostats/Thermostat.cpp (modified) * src/Thermostats/Woodcock.cpp (modified) * src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified) * src/UIElements/CommandLineUI/CommandLineParser.cpp (modified) * src/UIElements/CommandLineUI/CommandLineParser_validate.cpp (modified) * src/UIElements/CommandLineUI/CommandLineStatusIndicator.cpp (modified) * src/UIElements/CommandLineUI/CommandLineUIFactory.cpp (modified) * src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified) * src/UIElements/CommandLineUI/Query/AtomCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/AtomsCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/BooleanCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/DoubleCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/DoublesCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/ElementCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/ElementsCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/EmptyCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/FileCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/FilesCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/IntCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/IntsCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/MoleculeCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/MoleculesCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/RandomNumberDistribution_ParametersCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/RealSpaceMatrixCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/StringCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/StringsCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/UnsignedIntCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/UnsignedIntsCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/VectorCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/VectorsCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/TypeEnumContainer.cpp (modified) * src/UIElements/CommandLineUI/unittests/CommandLineParser_ActionRegistry_ConsistencyUnitTest.cpp (modified) * src/UIElements/Dialog.cpp (modified) * src/UIElements/MainWindow.cpp (modified) * src/UIElements/Menu/Menu.cpp (modified) * src/UIElements/Menu/MenuDescription.cpp (modified) * src/UIElements/Menu/MenuInterface.cpp (modified) * src/UIElements/Menu/Qt4/QtMenuPipe.cpp (modified) * src/UIElements/Menu/TextMenu/ActionMenuItem.cpp (modified) * src/UIElements/Menu/TextMenu/DisplayMenuItem.cpp (modified) * src/UIElements/Menu/TextMenu/MenuItem.cpp (modified) * src/UIElements/Menu/TextMenu/SeparatorMenuItem.cpp (modified) * src/UIElements/Menu/TextMenu/SubMenuItem.cpp (modified) * src/UIElements/Menu/TextMenu/TxMenu.cpp (modified) * src/UIElements/Menu/TextMenu/TxMenuLeaveAction.cpp (modified) * src/UIElements/Menu/unittests/MenuDescriptionUnitTest.cpp (modified) * src/UIElements/Menu/unittests/MenuDescription_ActionRegistry_ConsistencyUnitTest.cpp (modified) * src/UIElements/Qt4/QtDialog.cpp (modified) * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Qt4/QtUIFactory.cpp (modified) * src/UIElements/Qt4/Query/AtomQtQuery.cpp (modified) * src/UIElements/Qt4/Query/AtomsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/BooleanQtQuery.cpp (modified) * src/UIElements/Qt4/Query/DoubleQtQuery.cpp (modified) * src/UIElements/Qt4/Query/DoublesQtQuery.cpp (modified) * src/UIElements/Qt4/Query/ElementQtQuery.cpp (modified) * src/UIElements/Qt4/Query/ElementsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/EmptyQtQuery.cpp (modified) * src/UIElements/Qt4/Query/FileQtQuery.cpp (modified) * src/UIElements/Qt4/Query/FilesQtQuery.cpp (modified) * src/UIElements/Qt4/Query/IntQtQuery.cpp (modified) * src/UIElements/Qt4/Query/IntsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/MoleculeQtQuery.cpp (modified) * src/UIElements/Qt4/Query/MoleculesQtQuery.cpp (modified) * src/UIElements/Qt4/Query/QtQueryList.cpp (modified) * src/UIElements/Qt4/Query/RandomNumberDistribution_ParametersQtQuery.cpp (modified) * src/UIElements/Qt4/Query/RealSpaceMatrixQtQuery.cpp (modified) * src/UIElements/Qt4/Query/StringQtQuery.cpp (modified) * src/UIElements/Qt4/Query/StringsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/UnsignedIntQtQuery.cpp (modified) * src/UIElements/Qt4/Query/UnsignedIntsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/VectorQtQuery.cpp (modified) * src/UIElements/Qt4/Query/VectorsQtQuery.cpp (modified) * src/UIElements/Query/EmptyQuery.cpp (modified) * src/UIElements/Query/Query.cpp (modified) * src/UIElements/TextUI/Query/AtomTextQuery.cpp (modified) * src/UIElements/TextUI/Query/AtomsTextQuery.cpp (modified) * src/UIElements/TextUI/Query/BooleanTextQuery.cpp (modified) * src/UIElements/TextUI/Query/DoubleTextQuery.cpp (modified) * src/UIElements/TextUI/Query/DoublesTextQuery.cpp (modified) * src/UIElements/TextUI/Query/ElementTextQuery.cpp (modified) * src/UIElements/TextUI/Query/ElementsTextQuery.cpp (modified) * src/UIElements/TextUI/Query/EmptyTextQuery.cpp (modified) * src/UIElements/TextUI/Query/FileTextQuery.cpp (modified) * src/UIElements/TextUI/Query/FilesTextQuery.cpp (modified) * src/UIElements/TextUI/Query/IntTextQuery.cpp (modified) * src/UIElements/TextUI/Query/IntsTextQuery.cpp (modified) * src/UIElements/TextUI/Query/MoleculeTextQuery.cpp (modified) * src/UIElements/TextUI/Query/MoleculesTextQuery.cpp (modified) * src/UIElements/TextUI/Query/RandomNumberDistribution_ParametersTextQuery.cpp (modified) * src/UIElements/TextUI/Query/RealSpaceMatrixTextQuery.cpp (modified) * src/UIElements/TextUI/Query/StringTextQuery.cpp (modified) * src/UIElements/TextUI/Query/StringsTextQuery.cpp (modified) * src/UIElements/TextUI/Query/UnsignedIntTextQuery.cpp (modified) * src/UIElements/TextUI/Query/UnsignedIntsTextQuery.cpp (modified) * src/UIElements/TextUI/Query/VectorTextQuery.cpp (modified) * src/UIElements/TextUI/Query/VectorsTextQuery.cpp (modified) * src/UIElements/TextUI/TextDialog.cpp (modified) * src/UIElements/TextUI/TextStatusIndicator.cpp (modified) * src/UIElements/TextUI/TextUIFactory.cpp (modified) * src/UIElements/TextUI/TextWindow.cpp (modified) * src/UIElements/UIFactory.cpp (modified) * src/UIElements/Views/MethodStringView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/QtElementList.cpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) * src/UIElements/Views/Qt4/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/QtStatusBar.cpp (modified) * src/UIElements/Views/Qt4/QtToolBar.cpp (modified) * src/UIElements/Views/StreamStringView.cpp (modified) * src/UIElements/Views/StringView.cpp (modified) * src/UIElements/Views/View.cpp (modified) * src/World.cpp (modified) * src/WorldTime.cpp (modified) * src/builder.cpp (modified) * src/builder_init.cpp (modified) * src/cleanUp.cpp (modified) * src/config.cpp (modified) * src/controller.cpp (modified) * src/controller_AddOn_MPQCCommandJob.cpp (modified) * src/controller_MPQCCommandJob.cpp (modified) * src/molecule.cpp (modified) * src/molecule_geometry.cpp (modified) * src/molecule_graph.cpp (modified) * src/moleculelist.cpp (modified) * src/poolworker.cpp (modified) * src/unittests/AtomIdSetUnitTest.cpp (modified) * src/unittests/BoxUnitTest.cpp (modified) * src/unittests/Box_BoundaryConditionsUnitTest.cpp (modified) * src/unittests/FormulaUnitTest.cpp (modified) * src/unittests/ListOfBondsUnitTest.cpp (modified) * src/unittests/MoleculeUnitTest.cpp (modified) * src/unittests/TestRunnerMain.cpp (modified) * src/unittests/UnitTestMain.cpp (modified) * src/unittests/WorldTimeUnitTest.cpp (modified) * src/unittests/stubs/AtomStub.cpp (modified) * src/unittests/stubs/ObserverStub.cpp (modified) * src/unittests/stubs/WorldStub.cpp (modified) * tests/CodeChecks/testsuite-project-disclaimer.at (modified) * tests/JobMarket/mpqc.cpp (modified) FIX: As we use GSL internally, we are as of now required to use GPL ... Fri, 06 Jul 2012 10:18:46 GMT Frederik Heber [a10cc0] * JobMarket/AUTHORS (added) * JobMarket/COPYING (added) * JobMarket/ChangeLog (added) * JobMarket/INSTALL (added) * JobMarket/JobMarket-debug.pc.in (added) * JobMarket/JobMarket.pc.in (added) * JobMarket/Makefile.am (added) * JobMarket/NEWS (added) * JobMarket/README (added) * JobMarket/bootstrap (added) * JobMarket/build-aux/README (added) * JobMarket/configure.ac (added) * JobMarket/configure.scan (added) * JobMarket/doc/Doxyfile (added) * JobMarket/doc/Makefile.am (added) * JobMarket/doc/am_doxygen_include.am (added) * JobMarket/libJobMarket_config.h.in (added) * JobMarket/m4 (added) * JobMarket/src/JobMarket/Connection.hpp (moved) * JobMarket/src/JobMarket/ControllerChoices.hpp (moved) * JobMarket/src/JobMarket/ExitflagContainer.hpp (moved) * JobMarket/src/JobMarket/FragmentController.cpp (moved) * JobMarket/src/JobMarket/FragmentController.hpp (moved) * JobMarket/src/JobMarket/FragmentQueue.cpp (moved) * JobMarket/src/JobMarket/FragmentQueue.hpp (moved) * JobMarket/src/JobMarket/FragmentScheduler.cpp (moved) * JobMarket/src/JobMarket/FragmentScheduler.hpp (moved) * JobMarket/src/JobMarket/GlobalJobId.cpp (moved) * JobMarket/src/JobMarket/GlobalJobId.hpp (moved) * JobMarket/src/JobMarket/JobId.cpp (moved) * JobMarket/src/JobMarket/JobId.hpp (moved) * JobMarket/src/JobMarket/Jobs/FragmentJob.cpp (moved) * JobMarket/src/JobMarket/Jobs/FragmentJob.hpp (moved) * JobMarket/src/JobMarket/Jobs/SystemCommandJob.cpp (moved) * JobMarket/src/JobMarket/Jobs/SystemCommandJob.hpp (moved) * JobMarket/src/JobMarket/Listener.cpp (moved) * JobMarket/src/JobMarket/Listener.hpp (moved) * JobMarket/src/JobMarket/Makefile.am (added) * JobMarket/src/JobMarket/Operations/AsyncOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/AsyncOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/CheckResultsOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/CheckResultsOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/GetNextJobIdOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/GetNextJobIdOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ReceiveResultsOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ReceiveResultsOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/RemoveAllWorkerOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/RemoveAllWorkerOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/SendJobsOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/SendJobsOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ShutdownOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ShutdownOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Operation.hpp (moved) * JobMarket/src/JobMarket/Operations/OperationQueue.cpp (moved) * JobMarket/src/JobMarket/Operations/OperationQueue.hpp (moved) * JobMarket/src/JobMarket/Operations/OperationRegistry.cpp (moved) * JobMarket/src/JobMarket/Operations/OperationRegistry.hpp (moved) * JobMarket/src/JobMarket/Operations/Servers/SendJobToWorkerOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Servers/SendJobToWorkerOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Servers/ShutdownWorkerOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Servers/ShutdownWorkerOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/SyncOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/SyncOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/EnrollInPoolOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/EnrollInPoolOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/ObtainJobOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/ObtainJobOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/RemoveFromPoolOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/RemoveFromPoolOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/SubmitResultOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/SubmitResultOperation.hpp (moved) * JobMarket/src/JobMarket/Pool/PoolWorker.cpp (moved) * JobMarket/src/JobMarket/Pool/PoolWorker.hpp (moved) * JobMarket/src/JobMarket/Pool/WorkerPool.cpp (moved) * JobMarket/src/JobMarket/Pool/WorkerPool.hpp (moved) * JobMarket/src/JobMarket/Results/FragmentResult.cpp (moved) * JobMarket/src/JobMarket/Results/FragmentResult.hpp (moved) * JobMarket/src/JobMarket/WorkerAddress.cpp (moved) * JobMarket/src/JobMarket/WorkerAddress.hpp (moved) * JobMarket/src/JobMarket/WorkerChoices.hpp (moved) * JobMarket/src/JobMarket/atexit.cpp (moved) * JobMarket/src/JobMarket/atexit.hpp (moved) * JobMarket/src/JobMarket/types.hpp (moved) * JobMarket/src/documentation/Makefile.am (added) * JobMarket/src/documentation/jobmarket.dox (moved) * JobMarket/src/documentation/mainpage.dox (added) * JobMarket/src/unittests/FragmentJobUnitTest.cpp (moved) * JobMarket/src/unittests/FragmentJobUnitTest.hpp (moved) * JobMarket/src/unittests/FragmentQueueUnitTest.cpp (moved) * JobMarket/src/unittests/FragmentQueueUnitTest.hpp (moved) * JobMarket/src/unittests/FragmentResultUnitTest.cpp (moved) * JobMarket/src/unittests/FragmentResultUnitTest.hpp (moved) * JobMarket/src/unittests/Makefile.am (moved) * JobMarket/src/unittests/OperationQueueUnitTest.cpp (moved) * JobMarket/src/unittests/OperationQueueUnitTest.hpp (moved) * JobMarket/src/unittests/SystemCommandJobUnitTest.cpp (moved) * JobMarket/src/unittests/SystemCommandJobUnitTest.hpp (moved) * JobMarket/src/unittests/UnitTestMain.cpp (added) * JobMarket/src/unittests/WorkerAddressUnitTest.cpp (moved) * JobMarket/src/unittests/WorkerAddressUnitTest.hpp (moved) * JobMarket/src/unittests/WorkerPoolUnitTest.cpp (moved) * JobMarket/src/unittests/WorkerPoolUnitTest.hpp (moved) * JobMarket/src/unittests/stubs/AsyncOperationStub.hpp (moved) * JobMarket/src/unittests/stubs/FragmentJobStub.cpp (moved) * JobMarket/src/unittests/stubs/FragmentJobStub.hpp (moved) * JobMarket/src/unittests/stubs/FragmentResultStub.cpp (moved) * JobMarket/src/unittests/stubs/ObserverStub.cpp (added) * JobMarket/src/unittests/stubs/ObserverStub.hpp (added) * JobMarket/tests/CodeChecks/Makefile.am (added) * JobMarket/tests/CodeChecks/atlocal.in (added) * JobMarket/tests/CodeChecks/testsuite-config_h.at (added) * JobMarket/tests/CodeChecks/testsuite-date_in_dox.at (added) * JobMarket/tests/CodeChecks/testsuite-header-dist.at (added) * JobMarket/tests/CodeChecks/testsuite-memdebug.at (added) * JobMarket/tests/CodeChecks/testsuite-project-disclaimer.at (added) * JobMarket/tests/CodeChecks/testsuite.at (added) * Makefile.am (modified) * configure.ac (modified) * src/Fragmentation/Automation/Makefile.am (deleted) * src/Jobs/MPQCCommandJob.cpp (modified) * src/Jobs/MPQCCommandJob.hpp (modified) * src/Jobs/Makefile.am (modified) * src/Jobs/unittests/Makefile.am (modified) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/unittests/Makefile.am (modified) Moved all Fragmentation/Automation into new subpackage JobMarket. - ... Fri, 06 Jul 2012 10:18:46 GMT Frederik Heber [fd4d5e] * src/Fragmentation/Automation/Makefile.am (modified) * src/Makefile.am (modified) Added convenience libraries for Controller, Server, Pool, and ... Fri, 06 Jul 2012 10:18:43 GMT Frederik Heber [311137] * src/Fragmentation/Automation/FragmentController.cpp (modified) * src/Fragmentation/Automation/FragmentController.hpp (modified) * src/controller.cpp (modified) Changed FragmentController::printDoneJob() -> ::getJobStatus() which ... Fri, 06 Jul 2012 10:18:43 GMT Frederik Heber [cc5db5] * Makefile.am (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Jobs/MPQCCommandJob.cpp (moved) * src/Jobs/MPQCCommandJob.hpp (moved) * src/Jobs/MPQCCommandJob_MPQCData.cpp (moved) * src/Jobs/MPQCCommandJob_MPQCData.hpp (moved) * src/Jobs/Makefile.am (added) * src/Jobs/unittests/MPQCCommandJobUnitTest.cpp (moved) * src/Jobs/unittests/MPQCCommandJobUnitTest.hpp (moved) * src/Jobs/unittests/MPQCDataUnitTest.cpp (moved) * src/Jobs/unittests/MPQCDataUnitTest.hpp (moved) * src/Jobs/unittests/Makefile.am (added) * src/Makefile.am (modified) * src/Server.cpp (moved) * src/controller.cpp (moved) * src/poolworker.cpp (moved) * src/unittests/Makefile.am (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-checkstate.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-enrollinpool.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-getresults.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-mpqc-jobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-resubmitjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-shutdown.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) Moved all MPQCCommand... to src/Jobs, controller,server,poolworker to ... Fri, 06 Jul 2012 10:18:42 GMT Frederik Heber [c586d8] * src/Fragmentation/Automation/Worker.cpp (deleted) Removed file Worker.cpp. Fri, 06 Jul 2012 10:18:42 GMT Frederik Heber [30438f] * src/Fragmentation/Automation/Operations/OperationQueue.cpp (modified) * src/Fragmentation/Automation/Operations/OperationQueue.hpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/unittests/OperationQueueUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/OperationQueueUnitTest.hpp (modified) OperationQueue can be blocked to prevent further operations to be ... Fri, 06 Jul 2012 10:18:39 GMT Frederik Heber [7f19f8] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) Added helpful error message in ... Mon, 02 Jul 2012 08:32:10 GMT Frederik Heber [9d7c6a] * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) PoolWorker now has an OperationQueue and ServerAddress. - ... Mon, 02 Jul 2012 08:32:10 GMT Frederik Heber [b08c7c] * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) Renamed PoolWorker::address -> ::MyAddress to differentiate from ... Mon, 02 Jul 2012 08:32:09 GMT Frederik Heber [122de0] * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) PoolWorker now shuts down when enrollment is not successful. - new ... Mon, 02 Jul 2012 08:32:09 GMT Frederik Heber [bff93d] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Operations/Workers/RemoveFromPoolOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Workers/RemoveFromPoolOperation.hpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) RemoveFromPoolOperation is now async. - changed PoolWorker such ... Mon, 02 Jul 2012 08:32:08 GMT Frederik Heber [d57585] * src/Fragmentation/Automation/ExitflagContainer.hpp (added) * src/Fragmentation/Automation/FragmentController.cpp (modified) * src/Fragmentation/Automation/FragmentController.hpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Operations/AsyncOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Controllers/CheckResultsOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Controllers/ReceiveResultsOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Controllers/SendJobsOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Operation.hpp (modified) * src/Fragmentation/Automation/Operations/Servers/SendJobToWorkerOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Workers/EnrollInPoolOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Workers/ObtainJobOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Workers/SubmitResultOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Workers/SubmitResultOperation.hpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) Added ExitflagContainer that FragmentController and PoolWorker use. ... Mon, 02 Jul 2012 08:32:08 GMT Frederik Heber [9db22d] * src/Fragmentation/Automation/FragmentController.cpp (modified) * src/Fragmentation/Automation/Operations/AsyncOperation.cpp (modified) * src/Fragmentation/Automation/Operations/AsyncOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Controllers/CheckResultsOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Controllers/ReceiveResultsOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Controllers/SendJobsOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Servers/SendJobToWorkerOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Workers/EnrollInPoolOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Workers/ObtainJobOperation.hpp (modified) * src/Fragmentation/Automation/Operations/Workers/SubmitResultOperation.hpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) AsyncOperation and all derived classes changed their cstor and ... Mon, 02 Jul 2012 08:32:07 GMT Frederik Heber [17017b] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Operations/Workers/EnrollInPoolOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Workers/EnrollInPoolOperation.hpp (modified) FragmentScheduler sends true or false instead of specific enumeration ... Mon, 02 Jul 2012 08:32:06 GMT Frederik Heber [e48f5c] * src/Fragmentation/Automation/poolworker.cpp (modified) Hostname argument to poolworker is now optional. - we use ... Mon, 02 Jul 2012 08:32:06 GMT Frederik Heber [af9b9ff] * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-checkstate.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-enrollinpool.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-getresults.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-mpqc-jobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-resubmitjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-shutdown.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) Controller now also uses boost::program_options to parse command line ... Mon, 02 Jul 2012 08:32:05 GMT Frederik Heber [267b8d] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Server.cpp (modified) * src/Fragmentation/Automation/poolworker.cpp (modified) Server now also intercepts sigint and shuts down gracefully. - new ... Mon, 02 Jul 2012 08:32:05 GMT Frederik Heber [d9373b] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (modified) Server now gives information about number of total and idling workers ... Mon, 02 Jul 2012 08:32:04 GMT Frederik Heber [684bc1] * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Server.cpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-checkstate.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-enrollinpool.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-getresults.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-mpqc-jobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-resubmitjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-shutdown.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) Server now also parses worker and controller port via ... Mon, 02 Jul 2012 08:32:03 GMT Frederik Heber [012c98] * src/Fragmentation/Automation/Listener.cpp (modified) We now set option reuse_address to be more gentle only used ports. Mon, 02 Jul 2012 08:32:03 GMT Frederik Heber [5ac92e] * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/poolworker.cpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-enrollinpool.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-mpqc-jobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-resubmitjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) PoolWorker now parses command line options via ... Mon, 02 Jul 2012 08:32:02 GMT Frederik Heber [dc759c] * src/Fragmentation/Automation/controller.cpp (modified) FIX: All checks on command line arguments are now done in phase one, ... Mon, 02 Jul 2012 08:32:02 GMT Frederik Heber [92b1d3] * src/Fragmentation/Automation/Operations/OperationQueue.cpp (modified) * src/Fragmentation/Automation/Operations/OperationQueue.hpp (modified) OperationQueue now has a max_connections and allows only this number ... Mon, 02 Jul 2012 08:32:01 GMT Frederik Heber [81c96b6] * src/Fragmentation/Automation/Listener.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) FIX: Listener (and PoolWorker) now check whether address to listen on ... Mon, 02 Jul 2012 08:32:01 GMT Frederik Heber [270364] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) Rewrote FragmentScheduler::removeAllWorker() to only give shutdown ... Mon, 02 Jul 2012 08:32:00 GMT Frederik Heber [668b55] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) FragmentScheduler::shutdown() now returns bool and does not remove ... Mon, 02 Jul 2012 08:31:59 GMT Frederik Heber [b15c4f] * src/Fragmentation/Automation/ControllerChoices.hpp (modified) * src/Fragmentation/Automation/FragmentController.cpp (modified) * src/Fragmentation/Automation/FragmentController.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Operations/Controllers/RemoveAllWorkerOperation.cpp (added) * src/Fragmentation/Automation/Operations/Controllers/RemoveAllWorkerOperation.hpp (added) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) Added new RemoveAllWorkerOperation and removeall command to ... Mon, 02 Jul 2012 08:31:59 GMT Frederik Heber [befcf8] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (modified) Rewrote FragmentScheduler::shutdown to make sure idle_queue is truely ... Mon, 02 Jul 2012 08:31:57 GMT Frederik Heber [ba995d] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Operations/OperationQueue.hpp (modified) * src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.hpp (modified) ShutdownWorkerOperation is now an asynchronous operation. - ... Mon, 02 Jul 2012 08:31:57 GMT Frederik Heber [a40c85] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Operations/OperationQueue.cpp (modified) * src/Fragmentation/Automation/Operations/OperationQueue.hpp (modified) * src/Fragmentation/Automation/unittests/OperationQueueUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/OperationQueueUnitTest.hpp (modified) FragmentScheduler is relieved of observering Operations, is done by ... Mon, 02 Jul 2012 08:31:56 GMT Frederik Heber [9a6b895] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) FIX: FragmentScheduler now has an OperationQueue that monitors its ... Mon, 02 Jul 2012 08:31:47 GMT Frederik Heber [f45c08] * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Operations/OperationQueue.cpp (added) * src/Fragmentation/Automation/Operations/OperationQueue.hpp (added) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Fragmentation/Automation/unittests/OperationQueueUnitTest.cpp (added) * src/Fragmentation/Automation/unittests/OperationQueueUnitTest.hpp (added) * src/Fragmentation/Automation/unittests/stubs/AsyncOperationStub.hpp (added) Implemented OperationQueue that takes care of AsyncOperations. - ... Mon, 02 Jul 2012 07:54:13 GMT Frederik Heber [2e661a] * src/Fragmentation/Automation/Operations/AsyncOperation.cpp (modified) * src/Fragmentation/Automation/Operations/AsyncOperation.hpp (modified) AsyncOperation is now an Observable. - it gives update() when the ... Mon, 02 Jul 2012 07:54:13 GMT Frederik Heber [86a1e8] * src/Fragmentation/Automation/Operations/Servers/SendJobToWorkerOperation.hpp (modified) SendJobToWorkerOperation can be given job in its cstor. Mon, 02 Jul 2012 07:54:13 GMT Frederik Heber [3eb035] * src/Fragmentation/Automation/Pool/WorkerPool.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (modified) * src/Fragmentation/Automation/unittests/WorkerPoolUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/WorkerPoolUnitTest.hpp (modified) FIX: Removed channel WorkerRemoved in WorkerPool as it may cause ... Mon, 02 Jul 2012 07:54:13 GMT Frederik Heber [d76161] * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.hpp (modified) FIX: Removed channel JobRemoved from FragmentQueue as it may cause ... Mon, 02 Jul 2012 07:54:13 GMT Frederik Heber [5a8512] * src/Fragmentation/Automation/controller.cpp (modified) Completed printMPQCReceivedResults() in controller by using ... Mon, 02 Jul 2012 07:54:13 GMT Frederik Heber [917be8] * src/Fragmentation/Automation/Jobs/MPQCCommandJob.cpp (modified) * src/Fragmentation/Automation/Jobs/MPQCCommandJob.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) MPQCCommandJob now takes command argument to the mpqc executable. - ... Mon, 02 Jul 2012 07:54:13 GMT Frederik Heber [c4f43e] * src/Fragmentation/Automation/FragmentController.cpp (modified) * src/Fragmentation/Automation/FragmentController.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.cpp (modified) * src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) GetNextJobIdOperation now may request a vector of ids. - otherwise ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [e11611] * src/Fragmentation/Automation/FragmentController.cpp (modified) * src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.hpp (modified) GetNextJobIdOperation now has check whether id is available. Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [a2d653] * src/Fragmentation/MatrixContainer.cpp (modified) * src/Fragmentation/MatrixContainer.hpp (modified) Added MatrixContainer::AddMatrix() which takes of the functionality ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [d7bb9b1] * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) Controller now links to libMolecuilderFragmentation, has extended ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [4dd16e] * src/Fragmentation/Automation/FragmentController.cpp (modified) * src/Fragmentation/Automation/FragmentController.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) Placed some commodity functions from controller.cpp into ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [e032b4] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) FragmentScheduler::recieveNotification() now asserts that we only ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [d4885d] * src/Fragmentation/Automation/FragmentController.cpp (moved) * src/Fragmentation/Automation/FragmentController.hpp (moved) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) Moved FragmentController from Controller/, removed dir Controller. Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [6ee809] * src/Fragmentation/Automation/Controller/CommandRegistry.hpp (deleted) * src/Fragmentation/Automation/Controller/FragmentController.cpp (modified) * src/Fragmentation/Automation/Controller/FragmentController.hpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Operations/OperationRegistry.cpp (moved) * src/Fragmentation/Automation/Operations/OperationRegistry.hpp (added) Renamed CommandRegistry -> OperationRegistry. Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [50d095] * src/Fragmentation/Automation/Controller/CommandRegistry.hpp (modified) * src/Fragmentation/Automation/Controller/FragmentController.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Operations/AsyncOperation.cpp (moved) * src/Fragmentation/Automation/Operations/AsyncOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Controllers/CheckResultsOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Controllers/CheckResultsOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Controllers/ReceiveResultsOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Controllers/ReceiveResultsOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Controllers/SendJobsOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Controllers/SendJobsOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Controllers/ShutdownOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Controllers/ShutdownOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Operation.hpp (moved) * src/Fragmentation/Automation/Operations/Servers/SendJobToWorkerOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Servers/SendJobToWorkerOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.hpp (moved) * src/Fragmentation/Automation/Operations/SyncOperation.cpp (moved) * src/Fragmentation/Automation/Operations/SyncOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Workers/EnrollInPoolOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Workers/EnrollInPoolOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Workers/ObtainJobOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Workers/ObtainJobOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Workers/RemoveFromPoolOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Workers/RemoveFromPoolOperation.hpp (moved) * src/Fragmentation/Automation/Operations/Workers/SubmitResultOperation.cpp (moved) * src/Fragmentation/Automation/Operations/Workers/SubmitResultOperation.hpp (moved) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) Moved Controller/Commands to Operations/ folder and split into ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [9d14c3] * src/Fragmentation/Automation/Controller/Commands/ReceiveResultsOperation.cpp (moved) * src/Fragmentation/Automation/Controller/Commands/ReceiveResultsOperation.hpp (moved) * src/Fragmentation/Automation/Controller/FragmentController.cpp (modified) * src/Fragmentation/Automation/ControllerChoices.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) FIX: Renamed SendResultsOperation -> ReceiveResultsOperation in file ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [425fc6] * src/Fragmentation/Automation/Controller/Commands/SendJobsOperation.cpp (moved) * src/Fragmentation/Automation/Controller/Commands/SendJobsOperation.hpp (moved) * src/Fragmentation/Automation/Controller/FragmentController.cpp (modified) * src/Fragmentation/Automation/ControllerChoices.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) FIX: Renamed ReceiveJobsOperation -> SendJobsOperation in file and ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [6b3a37] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (modified) * src/Fragmentation/Automation/unittests/WorkerPoolUnitTest.cpp (modified) Added begin(),end() for idle_queue of WorkerPool. - this allows ... Mon, 02 Jul 2012 07:54:12 GMT Frederik Heber [6ea7f4] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) Changed FragmentScheduler::removeAllWorkers() by ... Mon, 02 Jul 2012 07:54:11 GMT Frederik Heber [8acd85] * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) Added PoolWorker::shutdown(). - overloaded shutdown(int) with ... Mon, 02 Jul 2012 07:54:11 GMT Frederik Heber [1cfd17] * src/Fragmentation/Automation/Controller/Commands/ShutdownWorkerOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/ShutdownWorkerOperation.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) Added synchronous ShutdownWorkerOperation. - ... Mon, 02 Jul 2012 07:54:11 GMT Frederik Heber [2344a3] * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-resubmitjobs.at (modified) FragmentScheduler is now an Observer of JobsQueue and pool. - ... Mon, 02 Jul 2012 07:54:10 GMT Frederik Heber [fb255d] * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (modified) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Fragmentation/Automation/unittests/WorkerPoolUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/WorkerPoolUnitTest.hpp (modified) WorkerPool is now observable. - this is preparatory for allowing ... Mon, 02 Jul 2012 07:53:25 GMT Frederik Heber [d6b12c] * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.hpp (modified) * src/Fragmentation/Automation/unittests/Makefile.am (modified) FragmentQueue is now observable. - this is preparatory for allowing ... Fri, 29 Jun 2012 13:23:20 GMT Frederik Heber [e8f397] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-resubmitjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) PoolWorker is now truely listenting. - does now ... Fri, 29 Jun 2012 13:23:20 GMT Frederik Heber [aec098] * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (modified) * src/Fragmentation/Automation/poolworker.cpp (modified) Added signal handling function to poolworker to intercept ctrl-c via ... Fri, 29 Jun 2012 13:23:14 GMT Frederik Heber [9a3f84] * src/Fragmentation/Automation/Controller/Commands/EnrollInPoolOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/EnrollInPoolOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/ObtainJobOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SubmitResultOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SubmitResultOperation.hpp (modified) * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (modified) FragmentScheduler now uses WorkerChoices for handling connection ... Fri, 29 Jun 2012 08:01:46 GMT Frederik Heber [a8f54b6] * src/Fragmentation/Automation/Controller/Commands/RemoveFromPoolOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/RemoveFromPoolOperation.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/WorkerChoices.hpp (added) Added RemoveFromPoolOperation. - is a SyncOperation for the Worker. ... Fri, 29 Jun 2012 08:01:46 GMT Frederik Heber [701bbc] * src/Fragmentation/Automation/Controller/CommandRegistry.cpp (modified) * src/Fragmentation/Automation/Controller/CommandRegistry.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/AsyncOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/AsyncOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/Operation.hpp (added) * src/Fragmentation/Automation/Controller/Commands/ShutdownOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/ShutdownOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/SyncOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/SyncOperation.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) Added SyncOperation and common base Operation. - CommandRegistry ... Fri, 29 Jun 2012 08:01:46 GMT Frederik Heber [7dd8bc] * src/Fragmentation/Automation/Connection.hpp (modified) Added template functions for sync_read() and sync_write() to ... Fri, 29 Jun 2012 08:01:45 GMT Frederik Heber [f98c8e] * src/Fragmentation/Automation/Controller/CommandRegistry.cpp (modified) * src/Fragmentation/Automation/Controller/CommandRegistry.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/AsyncOperation.cpp (moved) * src/Fragmentation/Automation/Controller/Commands/AsyncOperation.hpp (moved) * src/Fragmentation/Automation/Controller/Commands/CheckResultsOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/EnrollInPoolOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/EnrollInPoolOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/GetNextJobIdOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/GetNextJobIdOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/ObtainJobOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/ObtainJobOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendJobToWorkerOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendResultsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendResultsOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/ShutdownOperation.hpp (modified) * src/Fragmentation/Automation/Controller/Commands/SubmitResultOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SubmitResultOperation.hpp (modified) * src/Fragmentation/Automation/Controller/FragmentController.cpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (modified) Renamed Operation -> AsyncOperation in file and class. - this is ... Fri, 29 Jun 2012 08:01:38 GMT Frederik Heber [fe95b7] * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.hpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-resubmitjobs.at (added) * tests/regression/Fragmentation/testsuite-fragmentation.at (modified) * tests/regression/Makefile.am (modified) FragmentQueue can now resubmit jobs. - we keep an internal list of ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [559385] * src/Fragmentation/Automation/Controller/Commands/CheckResultsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/EnrollInPoolOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendJobToWorkerOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendResultsOperation.cpp (modified) FIX: Replaced calls to Operation::handle_FinishOperation by ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [38032a] * src/Fragmentation/Automation/Controller/Commands/Operation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendJobToWorkerOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/ShutdownOperation.cpp (modified) * src/Fragmentation/Automation/ControllerChoices.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) Renamed SchedulerStates -> ControllerChoices enum. - extracted from ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [41c1b7] * src/Fragmentation/Automation/Controller/Commands/EnrollInPoolOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/EnrollInPoolOperation.hpp (added) * src/Fragmentation/Automation/Controller/Commands/ObtainJobOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/ObtainJobOperation.hpp (added) * src/Fragmentation/Automation/Controller/Commands/SendJobToWorkerOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/SendJobToWorkerOperation.hpp (added) * src/Fragmentation/Automation/Controller/Commands/ShutdownOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SubmitResultOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/SubmitResultOperation.hpp (added) * src/Fragmentation/Automation/Controller/Commands/WorkOnJobOperation.cpp (deleted) * src/Fragmentation/Automation/Controller/Commands/WorkOnJobOperation.hpp (deleted) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (deleted) * src/Fragmentation/Automation/FragmentWorker.hpp (deleted) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Pool/PoolWorker.cpp (added) * src/Fragmentation/Automation/Pool/PoolWorker.hpp (added) * src/Fragmentation/Automation/Pool/WorkerPool.cpp (modified) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (modified) * src/Fragmentation/Automation/poolworker.cpp (added) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) HUGE: Added PoolWorker, removed (Fragment)Worker, and rewrote parts ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [5d8c0f] * src/Fragmentation/Automation/Pool/WorkerPool.cpp (added) * src/Fragmentation/Automation/Pool/WorkerPool.hpp (added) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Fragmentation/Automation/unittests/WorkerPoolUnitTest.cpp (added) * src/Fragmentation/Automation/unittests/WorkerPoolUnitTest.hpp (added) Added WorkerPool to handle a pool of Workers. - also added unit test. Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [edbf88] * src/Fragmentation/Automation/WorkerAddress.cpp (added) * src/Fragmentation/Automation/WorkerAddress.hpp (added) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Fragmentation/Automation/unittests/WorkerAddressUnitTest.cpp (added) * src/Fragmentation/Automation/unittests/WorkerAddressUnitTest.hpp (added) Added WorkerAddress, serializable host+service address. - also ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [8d7917] * src/Fragmentation/Automation/Makefile.am (modified) Restructured convenience libraries for Fragmentation/Automation. - ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [95454a] * src/Fragmentation/Automation/Controller/Commands/WorkOnJobOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/WorkOnJobOperation.hpp (added) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/FragmentWorker.hpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) Refactored main part in FragmentWorker into WorkOnJobOperation. - ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [8036b7] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/Listener.cpp (added) * src/Fragmentation/Automation/Listener.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) Refactored Listener out of FragmentScheduler. - this is preparatory ... Wed, 27 Jun 2012 16:07:21 GMT Frederik Heber [95b384] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) Removed duplicate code in FragmentScheduler with initiating new ... Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [986885] * src/Fragmentation/Automation/controller.cpp (modified) Added specific Command to controller to receive mpqc results and ... Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [509014] * src/Fragmentation/Automation/Jobs/MPQCCommandJob_MPQCData.cpp (modified) * src/Fragmentation/Automation/Jobs/MPQCCommandJob_MPQCData.hpp (modified) Added output stream operator to MPQCData. Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [554809] * src/Fragmentation/Automation/controller.cpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) createjobs now gets two options: command, argument. Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [d1dbfc] * src/Fragmentation/Automation/Controller/Commands/GetNextJobIdOperation.cpp (added) * src/Fragmentation/Automation/Controller/Commands/GetNextJobIdOperation.hpp (added) * src/Fragmentation/Automation/Controller/FragmentController.cpp (modified) * src/Fragmentation/Automation/ControllerChoices.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/GlobalJobId.cpp (modified) * src/Fragmentation/Automation/GlobalJobId.hpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) New GetNextJobIdOperation for obtaining next available JobId from ... Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [6f2bc7] * src/Fragmentation/Automation/Controller/Commands/CheckResultsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/CheckResultsOperation.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) CheckResultsOperation now receives both scheduled and done jobs. Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [bf56f6] * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) Added getPresentJobs() to FragmentQueue. Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [545446] * src/Fragmentation/Automation/Jobs/MPQCCommandJob.cpp (modified) * src/Fragmentation/Automation/Jobs/MPQCCommandJob.hpp (modified) * src/Fragmentation/Automation/unittests/MPQCCommandJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/MPQCCommandJobUnitTest.hpp (modified) Added serialization capability to MPQCCommandJob. - added unit test ... Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [ff60cfa] * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/GlobalJobId.cpp (added) * src/Fragmentation/Automation/GlobalJobId.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) Controller has new function addjobs. - addjobs parses mpqc input ... Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [306f60] * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/Jobs/MPQCCommandJob.cpp (modified) * src/Fragmentation/Automation/Jobs/MPQCCommandJob.hpp (modified) * src/Fragmentation/Automation/unittests/MPQCCommandJobUnitTest.cpp (modified) Extended MPQCCommandJob's extractString to understand MP2 keywords. Wed, 27 Jun 2012 16:07:20 GMT Frederik Heber [cc276e] * src/Fragmentation/Automation/Jobs/MPQCCommandJob.cpp (added) * src/Fragmentation/Automation/Jobs/MPQCCommandJob.hpp (added) * src/Fragmentation/Automation/Jobs/MPQCCommandJob_MPQCData.cpp (added) * src/Fragmentation/Automation/Jobs/MPQCCommandJob_MPQCData.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/unittests/MPQCCommandJobUnitTest.cpp (added) * src/Fragmentation/Automation/unittests/MPQCCommandJobUnitTest.hpp (added) * src/Fragmentation/Automation/unittests/MPQCDataUnitTest.cpp (added) * src/Fragmentation/Automation/unittests/MPQCDataUnitTest.hpp (added) * src/Fragmentation/Automation/unittests/Makefile.am (modified) Added MPQCCommandJob and result container MPQCData. - MPQCData ... Wed, 27 Jun 2012 16:07:18 GMT Frederik Heber [d920b9] * configure.ac (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.cpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.hpp (modified) * src/Fragmentation/Automation/Jobs/SystemCommandJob.cpp (added) * src/Fragmentation/Automation/Jobs/SystemCommandJob.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Worker.cpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Fragmentation/Automation/unittests/SystemCommandJobUnitTest.cpp (added) * src/Fragmentation/Automation/unittests/SystemCommandJobUnitTest.hpp (added) * src/Fragmentation/Automation/unittests/stubs/FragmentJobStub.cpp (added) * src/Fragmentation/Automation/unittests/stubs/FragmentJobStub.hpp (added) Abstracted FragmentJob and introduced SystemCommandJob which has its ... Tue, 26 Jun 2012 08:49:41 GMT Frederik Heber [7670865] * src/Fragmentation/Automation/Controller/Commands/SendResultsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendResultsOperation.hpp (modified) * src/Fragmentation/Automation/Controller/FragmentController.hpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.cpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.hpp (modified) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Results/FragmentResult.cpp (moved) * src/Fragmentation/Automation/Results/FragmentResult.hpp (moved) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentResultUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Fragmentation/Automation/unittests/stubs/FragmentResultStub.cpp (modified) Moved FragmentResult to subfolder Results. - changed includes and ... Tue, 26 Jun 2012 07:51:04 GMT Frederik Heber [35f587] * src/Fragmentation/Automation/Controller/Commands/SendResultsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/SendResultsOperation.hpp (modified) * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/FragmentResult.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/FragmentWorker.hpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.cpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) FragmentResult is now also encapsulated in boost::shared_ptr. - ... Fri, 22 Jun 2012 15:21:48 GMT Frederik Heber [f0834d] * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.hpp (modified) * src/Fragmentation/Automation/Controller/FragmentController.hpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/FragmentWorker.hpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.cpp (moved) * src/Fragmentation/Automation/Jobs/FragmentJob.hpp (moved) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/Makefile.am (modified) Moved FragmentJob to subfolder Jobs. - changed all includes and ... Fri, 22 Jun 2012 15:21:25 GMT Frederik Heber [78ad7d] * configure.ac (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.hpp (modified) * src/Fragmentation/Automation/FragmentJob.hpp (modified) * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/FragmentWorker.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) FragmentJob is now passed inside boost::shared_ptr. - FragmentJob ... Fri, 22 Jun 2012 08:19:31 GMT Frederik Heber [142ff5] * src/Fragmentation/Automation/FragmentJob.cpp (modified) * src/Fragmentation/Automation/FragmentJob.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.hpp (modified) FragmentJob now executes a specific string as command along with an ... Fri, 22 Jun 2012 08:19:31 GMT Frederik Heber [246d97] * src/Fragmentation/Automation/FragmentResult.cpp (modified) * src/Fragmentation/Automation/FragmentResult.hpp (modified) FragmentResult has additional variable exitflag. - this is to store ... Fri, 22 Jun 2012 08:19:29 GMT Frederik Heber [7ca772] * src/Fragmentation/Automation/Controller/CommandRegistry.cpp (added) * src/Fragmentation/Automation/Controller/CommandRegistry.hpp (added) * src/Fragmentation/Automation/Controller/FragmentController.cpp (modified) * src/Fragmentation/Automation/Controller/FragmentController.hpp (modified) * src/Fragmentation/Automation/Controller/JobAdder.cpp (deleted) * src/Fragmentation/Automation/Controller/ResultChecker.cpp (deleted) * src/Fragmentation/Automation/Controller/ResultGetter.cpp (deleted) * src/Fragmentation/Automation/Controller/Shutdowner.cpp (deleted) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/controller.cpp (added) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-addingjobs.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-checkstate.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-completerun.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-getresults.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-shutdown.at (modified) * tests/regression/Fragmentation/Automation/testsuite-fragmentation-automation-server-worker.at (modified) Operations are now contained in CommandRegistry in ... Thu, 17 May 2012 15:21:54 GMT Frederik Heber [50f418] * src/Fragmentation/Automation/Controller/FragmentController.hpp (modified) * src/Fragmentation/Automation/Controller/JobAdder.cpp (modified) * src/Fragmentation/Automation/Controller/ResultChecker.cpp (modified) * src/Fragmentation/Automation/Controller/ResultGetter.cpp (modified) Removed all those tiny relay functions in FragmentController. - we ...