#
# ChangeLog for src/AtomIdSet.cpp
#
# Generated by Trac 1.4.4
# Dec 26, 2024, 4:59:27 PM

Wed, 26 Sep 2012 17:24:47 GMT Frederik Heber <heber@…> [94d5ac6]
	* LinearAlgebra/src/LinearAlgebra/BoxVector.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/Line.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/LinePoint.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/LineSegment.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/LineSegmentSet.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/LinearSystemOfEquations.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/MatrixContent.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/MatrixVector_ops.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/Plane.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/RealSpaceMatrix.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/Space.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/Vector.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/VectorContent.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/VectorInterface.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/leastsquaremin.cpp (modified)
	* LinearAlgebra/src/LinearAlgebra/vector_ops.cpp (modified)
	* LinearAlgebra/src/unittests/LineUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/LinearSystemOfEquationsUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/MatrixContentSymmetricUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/MatrixContentUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/PlaneUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/RealSpaceMatrixUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/TestRunnerMain.cpp (modified)
	* LinearAlgebra/src/unittests/UnitTestMain.cpp (modified)
	* LinearAlgebra/src/unittests/VectorContentUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/VectorSetUnitTest.cpp (modified)
	* LinearAlgebra/src/unittests/VectorUnitTest.cpp (modified)
	* src/Actions/Action.cpp (modified)
	* src/Actions/ActionHistory.cpp (modified)
	* src/Actions/ActionRegistry.cpp (modified)
	* src/Actions/ActionSequence.cpp (modified)
	* src/Actions/ActionTrait.cpp (modified)
	* src/Actions/AnalysisAction/CalculateBoundingBoxAction.cpp (modified)
	* src/Actions/AnalysisAction/CalculateCellVolumeAction.cpp (modified)
	* src/Actions/AnalysisAction/CalculateMolarMassAction.cpp (modified)
	* src/Actions/AnalysisAction/DipoleAngularCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/DipoleCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/MolecularVolumeAction.cpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (modified)
	* src/Actions/AtomAction/AddAction.cpp (modified)
	* src/Actions/AtomAction/ChangeElementAction.cpp (modified)
	* src/Actions/AtomAction/RemoveAction.cpp (modified)
	* src/Actions/AtomAction/RotateAroundOriginByAngleAction.cpp (modified)
	* src/Actions/AtomAction/SaveSelectedAtomsAction.cpp (modified)
	* src/Actions/AtomAction/TranslateAction.cpp (modified)
	* src/Actions/CommandAction/BondLengthTableAction.cpp (modified)
	* src/Actions/CommandAction/ElementDbAction.cpp (modified)
	* src/Actions/CommandAction/FastParsingAction.cpp (modified)
	* src/Actions/CommandAction/HelpAction.cpp (modified)
	* src/Actions/CommandAction/HelpRedistributeAction.cpp (added)
	* src/Actions/CommandAction/HelpRedistributeAction.def (added)
	* src/Actions/CommandAction/HelpRedistributeAction.hpp (added)
	* src/Actions/CommandAction/VerboseAction.cpp (modified)
	* src/Actions/CommandAction/VersionAction.cpp (modified)
	* src/Actions/CommandAction/WarrantyAction.cpp (modified)
	* src/Actions/ErrorAction.cpp (modified)
	* src/Actions/FillAction/FillRegularGridAction.cpp (modified)
	* src/Actions/FillAction/FillSphericalSurfaceAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAutomationAction.cpp (modified)
	* src/Actions/GlobalListOfActions.hpp (modified)
	* src/Actions/GraphAction/CreateAdjacencyAction.cpp (modified)
	* src/Actions/GraphAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/GraphAction/SubgraphDissectionAction.cpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MakroAction.cpp (modified)
	* src/Actions/ManipulateAtomsProcess.cpp (modified)
	* src/Actions/MethodAction.cpp (modified)
	* src/Actions/MoleculeAction/BondFileAction.cpp (modified)
	* src/Actions/MoleculeAction/ChangeNameAction.cpp (modified)
	* src/Actions/MoleculeAction/CopyAction.cpp (modified)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (modified)
	* src/Actions/MoleculeAction/LoadAction.cpp (modified)
	* src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp (modified)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveSelectedMoleculesAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveTemperatureAction.cpp (modified)
	* src/Actions/MoleculeAction/SuspendInWaterAction.cpp (modified)
	* src/Actions/MoleculeAction/VerletIntegrationAction.cpp (modified)
	* src/Actions/OptionRegistry.cpp (modified)
	* src/Actions/OptionTrait.cpp (modified)
	* src/Actions/ParserAction/ParseTremoloPotentialsAction.cpp (modified)
	* src/Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.cpp (modified)
	* src/Actions/ParserAction/SetOutputFormatsAction.cpp (modified)
	* src/Actions/ParserAction/SetParserParametersAction.cpp (modified)
	* src/Actions/ParserAction/SetTremoloAtomdataAction.cpp (modified)
	* src/Actions/Process.cpp (modified)
	* src/Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.cpp (modified)
	* src/Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp (modified)
	* src/Actions/RedoAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AllAtomsInsideCuboidAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AllAtomsInsideSphereAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AtomByElementAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/AtomByOrderAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/ClearAllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/InvertAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAllAtomsInsideCuboidAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAllAtomsInsideSphereAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAtomByElementAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/Atoms/NotAtomByOrderAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/AllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/ClearAllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/InvertMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/MoleculeByFormulaAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/MoleculeByIdAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/MoleculeByNameAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/MoleculeByOrderAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/MoleculeOfAtomAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/NotAllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/NotMoleculeByIdAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/NotMoleculeByNameAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.cpp (modified)
	* src/Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.cpp (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified)
	* src/Actions/UndoAction.cpp (modified)
	* src/Actions/UndoRedoHelpers.cpp (modified)
	* src/Actions/Values.cpp (modified)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.cpp (modified)
	* src/Actions/WorldAction/BoundInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterOnEdgeAction.cpp (modified)
	* src/Actions/WorldAction/ChangeBoxAction.cpp (modified)
	* src/Actions/WorldAction/InputAction.cpp (modified)
	* src/Actions/WorldAction/OutputAction.cpp (modified)
	* src/Actions/WorldAction/OutputAsAction.cpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.cpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.cpp (modified)
	* src/Actions/WorldAction/SetBoundaryConditionsAction.cpp (modified)
	* src/Actions/WorldAction/SetDefaultNameAction.cpp (modified)
	* src/Actions/WorldAction/SetWorldTimeAction.cpp (modified)
	* src/Actions/pyMoleCuilder.cpp (modified)
	* src/Actions/unittests/ActionRegistryUnitTest.cpp (modified)
	* src/Actions/unittests/ActionSequenceUnitTest.cpp (modified)
	* src/Actions/unittests/AtomsCalculationUnitTest.cpp (modified)
	* src/Actions/unittests/ManipulateAtomsUnitTest.cpp (modified)
	* src/Analysis/analysis_bonds.cpp (modified)
	* src/Analysis/analysis_correlation.cpp (modified)
	* src/Analysis/unittests/AnalysisBondsUnitTest.cpp (modified)
	* src/Analysis/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified)
	* src/Analysis/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified)
	* src/Analysis/unittests/AnalysisPairCorrelationUnitTest.cpp (modified)
	* src/Analysis/unittests/CountBondsUnitTest.cpp (modified)
	* src/Atom/AtomObserver.cpp (modified)
	* src/Atom/AtomicInfo.cpp (modified)
	* src/Atom/CopyAtoms/CopyAtoms_SaturateDanglingBonds.cpp (modified)
	* src/Atom/CopyAtoms/CopyAtoms_withBonds.cpp (modified)
	* src/Atom/TesselPoint.cpp (modified)
	* src/Atom/atom.cpp (modified)
	* src/Atom/atom_atominfo.cpp (modified)
	* src/Atom/atom_bondedparticle.cpp (modified)
	* src/Atom/atom_bondedparticleinfo.cpp (modified)
	* src/Atom/atom_graphnode.cpp (modified)
	* src/Atom/atom_graphnodeinfo.cpp (modified)
	* src/Atom/atom_observable.cpp (modified)
	* src/Atom/atom_particleinfo.cpp (modified)
	* src/Atom/unittests/AtomObserverUnitTest.cpp (modified)
	* src/Atom/unittests/CopyAtomsInterfaceUnitTest.cpp (modified)
	* src/AtomIdSet.cpp (modified)
	* src/Bond/BondInfo.cpp (modified)
	* src/Bond/GraphEdge.cpp (modified)
	* src/Bond/bond.cpp (modified)
	* src/Bond/bond_observable.cpp (modified)
	* src/Box.cpp (modified)
	* src/Box_BoundaryConditions.cpp (modified)
	* src/ControllerOptions_MPQCCommandJob.cpp (modified)
	* src/Descriptors/AtomDescriptor.cpp (modified)
	* src/Descriptors/AtomIdDescriptor.cpp (modified)
	* src/Descriptors/AtomOfMoleculeDescriptor.cpp (modified)
	* src/Descriptors/AtomOfMoleculeSelectionDescriptor.cpp (modified)
	* src/Descriptors/AtomOrderDescriptor.cpp (modified)
	* src/Descriptors/AtomSelectionDescriptor.cpp (modified)
	* src/Descriptors/AtomShapeDescriptor.cpp (modified)
	* src/Descriptors/AtomTypeDescriptor.cpp (modified)
	* src/Descriptors/AtomsWithinDistanceOfDescriptor.cpp (modified)
	* src/Descriptors/MoleculeDescriptor.cpp (modified)
	* src/Descriptors/MoleculeFormulaDescriptor.cpp (modified)
	* src/Descriptors/MoleculeIdDescriptor.cpp (modified)
	* src/Descriptors/MoleculeNameDescriptor.cpp (modified)
	* src/Descriptors/MoleculeOfAtomSelectionDescriptor.cpp (modified)
	* src/Descriptors/MoleculeOrderDescriptor.cpp (modified)
	* src/Descriptors/MoleculePtrDescriptor.cpp (modified)
	* src/Descriptors/MoleculeSelectionDescriptor.cpp (modified)
	* src/Descriptors/unittests/AtomDescriptorUnitTest.cpp (modified)
	* src/Descriptors/unittests/MoleculeDescriptorUnitTest.cpp (modified)
	* src/Dynamics/MinimiseConstrainedPotential.cpp (modified)
	* src/Element/element.cpp (modified)
	* src/Element/elements_db.cpp (modified)
	* src/Element/periodentafel.cpp (modified)
	* src/Element/unittests/ElementUnitTest.cpp (modified)
	* src/Element/unittests/PeriodentafelUnitTest.cpp (modified)
	* src/Filling/Cluster.cpp (modified)
	* src/Filling/Filler.cpp (modified)
	* src/Filling/Generators/NodeGenerator.cpp (modified)
	* src/Filling/Inserter/Inserter.cpp (modified)
	* src/Filling/Inserter/RandomInserter.cpp (modified)
	* src/Filling/Inserter/SimpleInserter.cpp (modified)
	* src/Filling/Inserter/SurfaceInserter.cpp (modified)
	* src/Filling/Mesh/CubeMesh.cpp (modified)
	* src/Filling/Mesh/Mesh.cpp (modified)
	* src/Filling/Predicates/AnyFillPredicate.cpp (modified)
	* src/Filling/Predicates/FillPredicate.cpp (modified)
	* src/Filling/Predicates/IsInsideDomain_FillPredicate.cpp (modified)
	* src/Filling/Predicates/IsInsideSurface_FillPredicate.cpp (modified)
	* src/Filling/Predicates/IsValidInDomain_FillPredicate.cpp (modified)
	* src/Filling/Predicates/IsVoidNode_FillPredicate.cpp (modified)
	* src/Filling/Predicates/Ops_FillPredicate.cpp (modified)
	* src/Filling/unittests/ClusterUnitTest.cpp (modified)
	* src/Filling/unittests/FillerUnitTest.cpp (modified)
	* src/Filling/unittests/IsInsideDomain_FillPredicateUnitTest.cpp (modified)
	* src/Filling/unittests/IsInsideSurface_FillPredicateUnitTest.cpp (modified)
	* src/Filling/unittests/IsValidInDomain_FillPredicateUnitTest.cpp (modified)
	* src/Filling/unittests/IsVoidNode_FillPredicateUnitTest.cpp (modified)
	* src/Filling/unittests/Ops_FillPredicateUnitTest.cpp (modified)
	* src/Formula.cpp (modified)
	* src/Fragmentation/AdaptivityMap.cpp (modified)
	* src/Fragmentation/BondsPerShortestPath.cpp (modified)
	* src/Fragmentation/EnergyMatrix.cpp (modified)
	* src/Fragmentation/ForceMatrix.cpp (modified)
	* src/Fragmentation/Fragmentation.cpp (modified)
	* src/Fragmentation/Graph.cpp (modified)
	* src/Fragmentation/HessianMatrix.cpp (modified)
	* src/Fragmentation/KeySet.cpp (modified)
	* src/Fragmentation/KeySetsContainer.cpp (modified)
	* src/Fragmentation/MatrixContainer.cpp (modified)
	* src/Fragmentation/PowerSetGenerator.cpp (modified)
	* src/Fragmentation/UniqueFragments.cpp (modified)
	* src/Fragmentation/analyzer.cpp (modified)
	* src/Fragmentation/datacreator.cpp (modified)
	* src/Fragmentation/fragmentation_helpers.cpp (modified)
	* src/Fragmentation/helpers.cpp (modified)
	* src/Fragmentation/joiner.cpp (modified)
	* src/Fragmentation/unittests/KeySetsContainerUnitTest.cpp (modified)
	* src/Fragmentation/unittests/MatrixContainerUnitTest.cpp (modified)
	* src/Graph/BondGraph.cpp (modified)
	* src/Graph/BreadthFirstSearchAdd.cpp (modified)
	* src/Graph/BuildInducedSubgraph.cpp (modified)
	* src/Graph/CheckAgainstAdjacencyFile.cpp (modified)
	* src/Graph/ConnectedSubgraph.cpp (modified)
	* src/Graph/CyclicStructureAnalysis.cpp (modified)
	* src/Graph/DepthFirstSearchAnalysis.cpp (modified)
	* src/Graph/unittests/BondGraphUnitTest.cpp (modified)
	* src/Graph/unittests/CheckAgainstAdjacencyFileUnitTest.cpp (modified)
	* src/Helpers/defs.cpp (modified)
	* src/Jobs/MPQCCommandJob.cpp (modified)
	* src/Jobs/MPQCCommandJob_MPQCData.cpp (modified)
	* src/Jobs/unittests/MPQCCommandJobUnitTest.cpp (modified)
	* src/Jobs/unittests/MPQCDataUnitTest.cpp (modified)
	* src/LinkedCell/LinkedCell.cpp (modified)
	* src/LinkedCell/LinkedCell_Controller.cpp (modified)
	* src/LinkedCell/LinkedCell_Model.cpp (modified)
	* src/LinkedCell/LinkedCell_Model_LinkedCellArrayCache.cpp (modified)
	* src/LinkedCell/LinkedCell_Model_Update.cpp (modified)
	* src/LinkedCell/LinkedCell_Model_changeModel.cpp (modified)
	* src/LinkedCell/LinkedCell_View.cpp (modified)
	* src/LinkedCell/linkedcell.cpp (modified)
	* src/LinkedCell/tripleIndex.cpp (modified)
	* src/LinkedCell/unittests/LinkedCellUnitTest.cpp (modified)
	* src/LinkedCell/unittests/LinkedCell_ControllerUnitTest.cpp (modified)
	* src/LinkedCell/unittests/LinkedCell_ModelUnitTest.cpp (modified)
	* src/LinkedCell/unittests/LinkedCell_ViewUnitTest.cpp (modified)
	* src/LinkedCell/unittests/linkedcellUnitTest.cpp (modified)
	* src/LinkedCell/unittests/stubs/AtomObserverStub.cpp (modified)
	* src/LinkedCell/unittests/stubs/ObserverBoxStub.cpp (modified)
	* src/LinkedCell/unittests/stubs/TesselPointStub.cpp (modified)
	* src/LinkedCell/unittests/stubs/WorldTimeStub.cpp (modified)
	* src/MoleculeLeafClass.cpp (modified)
	* src/Parameters/Validators/Specific/ActionNameValidator.cpp (modified)
	* src/Parameters/Validators/Specific/AtomDataValidator.cpp (modified)
	* src/Parameters/Validators/Specific/AtomIdValidator.cpp (modified)
	* src/Parameters/Validators/Specific/BoundaryConditionValidator.cpp (modified)
	* src/Parameters/Validators/Specific/BoxLengthValidator.cpp (modified)
	* src/Parameters/Validators/Specific/BoxVectorValidator.cpp (modified)
	* src/Parameters/Validators/Specific/FileSuffixValidator.cpp (modified)
	* src/Parameters/Validators/Specific/FormulaValidator.cpp (modified)
	* src/Parameters/Validators/Specific/KeyValueValidator.cpp (modified)
	* src/Parameters/Validators/Specific/MoleculeIdValidator.cpp (modified)
	* src/Parameters/Validators/Specific/ParserFileValidator.cpp (modified)
	* src/Parameters/Validators/Specific/ParserTypeValidator.cpp (modified)
	* src/Parameters/Validators/Specific/RandomNumberValidators.cpp (modified)
	* src/Parameters/Validators/Specific/RealSpaceMatrixInvertibleValidator.cpp (modified)
	* src/Parameters/Validators/Specific/RealSpaceMatrixSymmetricValidator.cpp (modified)
	* src/Parameters/Validators/Specific/TimeStepPresentValidator.cpp (modified)
	* src/Parameters/Validators/Specific/VectorNotZeroValidator.cpp (modified)
	* src/Parameters/Validators/Specific/VectorPositiveComponentsValidator.cpp (modified)
	* src/Parameters/Validators/Specific/VectorZeroOneComponentsValidator.cpp (modified)
	* src/Parameters/unittests/ContinuousParameterTest.cpp (modified)
	* src/Parameters/unittests/ContinuousValueTest.cpp (modified)
	* src/Parameters/unittests/DiscreteParameterTest.cpp (modified)
	* src/Parameters/unittests/DiscreteValueTest.cpp (modified)
	* src/Parameters/unittests/Ops_ValidatorTest.cpp (modified)
	* src/Parameters/unittests/stubs/ActionNameValidatorStub.cpp (modified)
	* src/Parameters/unittests/stubs/BoxLengthValidatorStub.cpp (modified)
	* src/Parameters/unittests/stubs/BoxVectorValidatorStub.cpp (modified)
	* src/Parameters/unittests/stubs/TimeStepPresentValidatorStub.cpp (modified)
	* src/Parser/ChangeTracker.cpp (modified)
	* src/Parser/ConfigFileBuffer.cpp (modified)
	* src/Parser/FormatParserStorage.cpp (modified)
	* src/Parser/FormatParser_Parameters.cpp (modified)
	* src/Parser/FormatParser_common.cpp (modified)
	* src/Parser/MpqcParser.cpp (modified)
	* src/Parser/MpqcParser_Parameters.cpp (modified)
	* src/Parser/MpqcParser_Parameters_initBasis.cpp (modified)
	* src/Parser/Parameters/ParameterStorage.cpp (modified)
	* src/Parser/Parameters/unittests/ParameterStorageUnitTest.cpp (modified)
	* src/Parser/Parameters/unittests/StringParameterUnitTest.cpp (modified)
	* src/Parser/ParserTypes.cpp (modified)
	* src/Parser/PcpParser.cpp (modified)
	* src/Parser/PcpParser_helper.cpp (modified)
	* src/Parser/PdbAtomInfoContainer.cpp (modified)
	* src/Parser/PdbParser.cpp (modified)
	* src/Parser/Psi3Parser.cpp (modified)
	* src/Parser/Psi3Parser_Parameters.cpp (modified)
	* src/Parser/TremoloAtomInfoContainer.cpp (modified)
	* src/Parser/TremoloParser.cpp (modified)
	* src/Parser/TremoloParser_ElementKeys.cpp (modified)
	* src/Parser/XmlParser.cpp (modified)
	* src/Parser/XyzParser.cpp (modified)
	* src/Parser/unittests/ParserMpqcUnitTest.cpp (modified)
	* src/Parser/unittests/ParserPcpUnitTest.cpp (modified)
	* src/Parser/unittests/ParserPdbUnitTest.cpp (modified)
	* src/Parser/unittests/ParserPsi3UnitTest.cpp (modified)
	* src/Parser/unittests/ParserTremoloUnitTest.cpp (modified)
	* src/Parser/unittests/ParserTremolo_ElementKeysUnitTest.cpp (modified)
	* src/Parser/unittests/ParserXmlUnitTest.cpp (modified)
	* src/Parser/unittests/ParserXyzUnitTest.cpp (modified)
	* src/RandomNumbers/RandomNumberDistributionFactory.cpp (modified)
	* src/RandomNumbers/RandomNumberDistribution_Encapsulation.cpp (modified)
	* src/RandomNumbers/RandomNumberDistribution_Parameters.cpp (modified)
	* src/RandomNumbers/RandomNumberEngineFactory.cpp (modified)
	* src/RandomNumbers/RandomNumberEngine_Encapsulation.cpp (modified)
	* src/RandomNumbers/RandomNumberEngine_Parameters.cpp (modified)
	* src/RandomNumbers/RandomNumberGenerator.cpp (modified)
	* src/RandomNumbers/RandomNumberGeneratorFactory.cpp (modified)
	* src/RandomNumbers/unittests/RandomNumberDistributionFactoryUnitTest.cpp (modified)
	* src/RandomNumbers/unittests/RandomNumberEngineFactoryUnitTest.cpp (modified)
	* src/RandomNumbers/unittests/RandomNumberGeneratorFactoryUnitTest.cpp (modified)
	* src/RandomNumbers/unittests/RandomNumberGeneratorUnitTest.cpp (modified)
	* src/Server.cpp (modified)
	* src/Shapes/BaseShapes.cpp (modified)
	* src/Shapes/Shape.cpp (modified)
	* src/Shapes/ShapeOps.cpp (modified)
	* src/Shapes/unittests/BaseShapesUnitTest.cpp (modified)
	* src/Shapes/unittests/ShapeOpsUnitTest.cpp (modified)
	* src/Shapes/unittests/Shape_HomogeneousPointsUnitTest.cpp (modified)
	* src/Shapes/unittests/stubs/ApproximateShapeAreaStub.cpp (modified)
	* src/Shapes/unittests/stubs/ApproximateShapeVolumeStub.cpp (modified)
	* src/Tesselation/ApproximateShapeArea.cpp (modified)
	* src/Tesselation/ApproximateShapeVolume.cpp (modified)
	* src/Tesselation/BoundaryLineSet.cpp (modified)
	* src/Tesselation/BoundaryPointSet.cpp (modified)
	* src/Tesselation/BoundaryPolygonSet.cpp (modified)
	* src/Tesselation/BoundaryTriangleSet.cpp (modified)
	* src/Tesselation/CandidateForTesselation.cpp (modified)
	* src/Tesselation/boundary.cpp (modified)
	* src/Tesselation/ellipsoid.cpp (modified)
	* src/Tesselation/tesselation.cpp (modified)
	* src/Tesselation/tesselationhelpers.cpp (modified)
	* src/Tesselation/triangleintersectionlist.cpp (modified)
	* src/Tesselation/unittests/TesselationUnitTest.cpp (modified)
	* src/Tesselation/unittests/Tesselation_BoundaryTriangleUnitTest.cpp (modified)
	* src/Tesselation/unittests/Tesselation_InsideOutsideUnitTest.cpp (modified)
	* src/Thermostats/Berendsen.cpp (modified)
	* src/Thermostats/GaussianThermostat.cpp (modified)
	* src/Thermostats/Langevin.cpp (modified)
	* src/Thermostats/NoThermostat.cpp (modified)
	* src/Thermostats/NoseHoover.cpp (modified)
	* src/Thermostats/ThermoStatContainer.cpp (modified)
	* src/Thermostats/Thermostat.cpp (modified)
	* src/Thermostats/Woodcock.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineParser.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineParser_validate.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineStatusIndicator.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineUIFactory.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified)
	* src/UIElements/CommandLineUI/Query/AtomCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/AtomsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/BooleanCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/DoubleCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/DoublesCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/ElementCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/ElementsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/EmptyCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/FileCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/FilesCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/IntCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/IntsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/MoleculeCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/MoleculesCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/RandomNumberDistribution_ParametersCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/RealSpaceMatrixCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/StringCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/StringsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/UnsignedIntCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/UnsignedIntsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/VectorCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/VectorsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/TypeEnumContainer.cpp (modified)
	* src/UIElements/CommandLineUI/unittests/CommandLineParser_ActionRegistry_ConsistencyUnitTest.cpp (modified)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/MainWindow.cpp (modified)
	* src/UIElements/Menu/Menu.cpp (modified)
	* src/UIElements/Menu/MenuDescription.cpp (modified)
	* src/UIElements/Menu/MenuInterface.cpp (modified)
	* src/UIElements/Menu/Qt4/QtMenuPipe.cpp (modified)
	* src/UIElements/Menu/TextMenu/ActionMenuItem.cpp (modified)
	* src/UIElements/Menu/TextMenu/DisplayMenuItem.cpp (modified)
	* src/UIElements/Menu/TextMenu/MenuItem.cpp (modified)
	* src/UIElements/Menu/TextMenu/SeparatorMenuItem.cpp (modified)
	* src/UIElements/Menu/TextMenu/SubMenuItem.cpp (modified)
	* src/UIElements/Menu/TextMenu/TxMenu.cpp (modified)
	* src/UIElements/Menu/TextMenu/TxMenuLeaveAction.cpp (modified)
	* src/UIElements/Menu/unittests/MenuDescriptionUnitTest.cpp (modified)
	* src/UIElements/Menu/unittests/MenuDescription_ActionRegistry_ConsistencyUnitTest.cpp (modified)
	* src/UIElements/Qt4/QtDialog.cpp (modified)
	* src/UIElements/Qt4/QtMainWindow.cpp (modified)
	* src/UIElements/Qt4/QtUIFactory.cpp (modified)
	* src/UIElements/Qt4/Query/AtomQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/AtomsQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/BooleanQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/DoubleQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/DoublesQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/ElementQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/ElementsQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/EmptyQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/FileQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/FilesQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/IntQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/IntsQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/MoleculeQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/MoleculesQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/QtQueryList.cpp (modified)
	* src/UIElements/Qt4/Query/RandomNumberDistribution_ParametersQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/RealSpaceMatrixQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/StringQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/StringsQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/UnsignedIntQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/UnsignedIntsQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/VectorQtQuery.cpp (modified)
	* src/UIElements/Qt4/Query/VectorsQtQuery.cpp (modified)
	* src/UIElements/Query/EmptyQuery.cpp (modified)
	* src/UIElements/Query/Query.cpp (modified)
	* src/UIElements/TextUI/Query/AtomTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/AtomsTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/BooleanTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/DoubleTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/DoublesTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/ElementTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/ElementsTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/EmptyTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/FileTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/FilesTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/IntTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/IntsTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/MoleculeTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/MoleculesTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/RandomNumberDistribution_ParametersTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/RealSpaceMatrixTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/StringTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/StringsTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/UnsignedIntTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/UnsignedIntsTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/VectorTextQuery.cpp (modified)
	* src/UIElements/TextUI/Query/VectorsTextQuery.cpp (modified)
	* src/UIElements/TextUI/TextDialog.cpp (modified)
	* src/UIElements/TextUI/TextStatusIndicator.cpp (modified)
	* src/UIElements/TextUI/TextUIFactory.cpp (modified)
	* src/UIElements/TextUI/TextWindow.cpp (modified)
	* src/UIElements/UIFactory.cpp (modified)
	* src/UIElements/Views/MethodStringView.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified)
	* src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified)
	* src/UIElements/Views/Qt4/QtElementList.cpp (modified)
	* src/UIElements/Views/Qt4/QtInfoBox.cpp (modified)
	* src/UIElements/Views/Qt4/QtMoleculeList.cpp (modified)
	* src/UIElements/Views/Qt4/QtStatusBar.cpp (modified)
	* src/UIElements/Views/Qt4/QtToolBar.cpp (modified)
	* src/UIElements/Views/StreamStringView.cpp (modified)
	* src/UIElements/Views/StringView.cpp (modified)
	* src/UIElements/Views/View.cpp (modified)
	* src/World.cpp (modified)
	* src/WorldTime.cpp (modified)
	* src/builder.cpp (modified)
	* src/builder_init.cpp (modified)
	* src/cleanUp.cpp (modified)
	* src/config.cpp (modified)
	* src/controller.cpp (modified)
	* src/controller_AddOn_MPQCCommandJob.cpp (modified)
	* src/controller_MPQCCommandJob.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/poolworker.cpp (modified)
	* src/unittests/AtomIdSetUnitTest.cpp (modified)
	* src/unittests/BoxUnitTest.cpp (modified)
	* src/unittests/Box_BoundaryConditionsUnitTest.cpp (modified)
	* src/unittests/FormulaUnitTest.cpp (modified)
	* src/unittests/ListOfBondsUnitTest.cpp (modified)
	* src/unittests/MoleculeUnitTest.cpp (modified)
	* src/unittests/TestRunnerMain.cpp (modified)
	* src/unittests/UnitTestMain.cpp (modified)
	* src/unittests/WorldTimeUnitTest.cpp (modified)
	* src/unittests/stubs/AtomStub.cpp (modified)
	* src/unittests/stubs/ObserverStub.cpp (modified)
	* src/unittests/stubs/WorldStub.cpp (modified)
	* tests/CodeChecks/testsuite-project-disclaimer.at (modified)
	* tests/JobMarket/mpqc.cpp (modified)

	FIX: As we use GSL internally, we are as of now required to use GPL ...


Fri, 06 Apr 2012 11:43:11 GMT Frederik Heber <heber@…> [6aad6f]
	* src/AtomIdSet.cpp (modified)
	* src/AtomIdSet.hpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule.hpp (modified)
	* src/unittests/AtomIdSetUnitTest.cpp (modified)
	* src/unittests/AtomIdSetUnitTest.hpp (modified)

	FIX: molecule::containsAtom() is now const and has const param, added ...


Fri, 30 Mar 2012 08:22:24 GMT Frederik Heber <heber@…> [5e6534]
	* src/AtomIdSet.cpp (added)
	* src/AtomIdSet.hpp (added)
	* src/Makefile.am (modified)
	* src/unittests/AtomIdSetUnitTest.cpp (added)
	* src/unittests/AtomIdSetUnitTest.hpp (added)
	* src/unittests/Makefile.am (modified)

	Refactored transform_iterator out of class molecule as AtomIdSet.

	- ...