#
# ChangeLog for src/Actions/Makefile.am
#
# Generated by Trac 1.4.4
# Mar 22, 2025, 12:23:33 PM

Sun, 05 Dec 2010 00:20:07 GMT Frederik Heber <heber@…> [cabb46]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MoleculeAction/LoadAction.cpp (added)
	* src/Actions/MoleculeAction/LoadAction.def (moved)
	* src/Actions/MoleculeAction/LoadAction.hpp (moved)
	* src/Actions/MoleculeAction/SaveAction.cpp (moved)
	* src/Actions/MoleculeAction/SaveAction.def (moved)
	* src/Actions/MoleculeAction/SaveAction.hpp (moved)
	* src/Actions/ParserAction/LoadXyzAction.cpp (deleted)
	* src/Actions/WorldAction/InputAction.cpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.def (modified)
	* src/Parser/FormatParserStorage.cpp (modified)
	* src/Parser/FormatParserStorage.hpp (modified)
	* src/Parser/XyzParser.cpp (modified)
	* src/unittests/ParserCommonUnitTest.cpp (modified)
	* tests/regression/Simple_configuration/2/post/test.conf (modified)
	* tests/regression/Simple_configuration/2/post/test.pdb (modified)
	* tests/regression/Simple_configuration/2/pre/test.conf (added)
	* tests/regression/Simple_configuration/2/pre/test.pdb (added)
	* tests/regression/Simple_configuration/2/pre/test.xyz (modified)
	* tests/regression/testsuite-domain.at (modified)
	* tests/regression/testsuite-molecules.at (modified)
	* tests/regression/testsuite-simple_configuration.at (modified)

	Extended LoadXyz and SaveXyz to any format.

	- renamed ...


Sat, 04 Dec 2010 23:47:35 GMT Frederik Heber <heber@…> [d5240d]
	* configure.ac (modified)
	* src/Actions/Makefile.am (modified)
	* src/Exceptions/Makefile.am (modified)
	* src/Helpers/Makefile.am (modified)
	* src/LinearAlgebra/Makefile.am (modified)
	* src/Makefile.am (modified)
	* src/Parser/Makefile.am (modified)
	* src/UIElements/CommandLineUI/CommandLineParser_validate.cpp (modified)
	* src/UIElements/Makefile.am (modified)
	* src/unittests/Makefile.am (modified)

	FIX: Linking to non-system boost is working now.

	- FIX: ...


Sat, 30 Oct 2010 20:42:44 GMT Frederik Heber <heber@…> [e4afb4]
	* src/Actions/Action.cpp (modified)
	* src/Actions/Action.hpp (modified)
	* src/Actions/ActionHistory.cpp (modified)
	* src/Actions/ActionHistory.hpp (modified)
	* src/Actions/ActionRegistry.cpp (modified)
	* src/Actions/ActionRegistry.hpp (modified)
	* src/Actions/ActionTraits.cpp (modified)
	* src/Actions/ActionTraits.hpp (modified)
	* src/Actions/Action_impl_header.hpp (modified)
	* src/Actions/Action_impl_pre.hpp (modified)
	* src/Actions/AnalysisAction/MolecularVolumeAction.cpp (modified)
	* src/Actions/AnalysisAction/MolecularVolumeAction.def (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.def (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.def (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.def (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.def (modified)
	* src/Actions/AtomAction/AddAction.cpp (modified)
	* src/Actions/AtomAction/AddAction.def (modified)
	* src/Actions/AtomAction/ChangeElementAction.cpp (modified)
	* src/Actions/AtomAction/ChangeElementAction.def (modified)
	* src/Actions/AtomAction/RemoveAction.cpp (modified)
	* src/Actions/AtomAction/RemoveAction.def (modified)
	* src/Actions/AtomAction/RotateAroundOriginByAngleAction.cpp (modified)
	* src/Actions/AtomAction/RotateAroundOriginByAngleAction.def (modified)
	* src/Actions/AtomAction/TranslateAction.cpp (modified)
	* src/Actions/AtomAction/TranslateAction.def (modified)
	* src/Actions/AtomsCalculation.hpp (modified)
	* src/Actions/AtomsCalculation_impl.hpp (modified)
	* src/Actions/Calculation.hpp (modified)
	* src/Actions/Calculation_impl.hpp (modified)
	* src/Actions/CommandAction/BondLengthTableAction.cpp (modified)
	* src/Actions/CommandAction/BondLengthTableAction.def (modified)
	* src/Actions/CommandAction/ElementDbAction.cpp (modified)
	* src/Actions/CommandAction/ElementDbAction.def (modified)
	* src/Actions/CommandAction/FastParsingAction.cpp (modified)
	* src/Actions/CommandAction/FastParsingAction.def (modified)
	* src/Actions/CommandAction/HelpAction.cpp (modified)
	* src/Actions/CommandAction/HelpAction.def (modified)
	* src/Actions/CommandAction/VerboseAction.cpp (modified)
	* src/Actions/CommandAction/VerboseAction.def (modified)
	* src/Actions/CommandAction/VersionAction.cpp (modified)
	* src/Actions/CommandAction/VersionAction.def (modified)
	* src/Actions/CommandAction/WarrantyAction.cpp (modified)
	* src/Actions/CommandAction/WarrantyAction.def (modified)
	* src/Actions/ErrorAction.cpp (modified)
	* src/Actions/ErrorAction.hpp (modified)
	* src/Actions/FragmentationAction/ConstructBondGraphAction.cpp (modified)
	* src/Actions/FragmentationAction/ConstructBondGraphAction.def (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.def (modified)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.def (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.cpp (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.def (modified)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MakroAction.cpp (modified)
	* src/Actions/MakroAction.hpp (modified)
	* src/Actions/ManipulateAtomsProcess.cpp (modified)
	* src/Actions/ManipulateAtomsProcess.hpp (modified)
	* src/Actions/MapOfActions.cpp (deleted)
	* src/Actions/MapOfActions.hpp (deleted)
	* src/Actions/MethodAction.cpp (modified)
	* src/Actions/MethodAction.hpp (modified)
	* src/Actions/MoleculeAction/BondFileAction.cpp (modified)
	* src/Actions/MoleculeAction/BondFileAction.def (modified)
	* src/Actions/MoleculeAction/ChangeNameAction.cpp (modified)
	* src/Actions/MoleculeAction/ChangeNameAction.def (modified)
	* src/Actions/MoleculeAction/CopyAction.cpp (modified)
	* src/Actions/MoleculeAction/CopyAction.def (modified)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.def (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.def (modified)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (modified)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.def (modified)
	* src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp (modified)
	* src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.def (modified)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp (modified)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.def (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.def (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.def (modified)
	* src/Actions/MoleculeAction/SaveTemperatureAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveTemperatureAction.def (modified)
	* src/Actions/MoleculeAction/SuspendInWaterAction.cpp (modified)
	* src/Actions/MoleculeAction/SuspendInWaterAction.def (modified)
	* src/Actions/MoleculeAction/VerletIntegrationAction.cpp (modified)
	* src/Actions/MoleculeAction/VerletIntegrationAction.def (modified)
	* src/Actions/OptionRegistry.cpp (added)
	* src/Actions/OptionRegistry.hpp (added)
	* src/Actions/OptionTrait.cpp (added)
	* src/Actions/OptionTrait.hpp (added)
	* src/Actions/ParserAction/LoadXyzAction.cpp (modified)
	* src/Actions/ParserAction/LoadXyzAction.def (modified)
	* src/Actions/ParserAction/SaveXyzAction.cpp (modified)
	* src/Actions/ParserAction/SaveXyzAction.def (modified)
	* src/Actions/Process.cpp (modified)
	* src/Actions/Process.hpp (modified)
	* src/Actions/RedoAction.cpp (added)
	* src/Actions/RedoAction.def (added)
	* src/Actions/RedoAction.hpp (added)
	* src/Actions/SelectionAction/AllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsAction.def (modified)
	* src/Actions/SelectionAction/AllAtomsInsideCuboidAction.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsInsideCuboidAction.def (modified)
	* src/Actions/SelectionAction/AllAtomsInsideSphereAction.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsInsideSphereAction.def (modified)
	* src/Actions/SelectionAction/AllAtomsOfMoleculeAction.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsOfMoleculeAction.def (modified)
	* src/Actions/SelectionAction/AllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/AllMoleculesAction.def (modified)
	* src/Actions/SelectionAction/AtomByElementAction.cpp (modified)
	* src/Actions/SelectionAction/AtomByElementAction.def (modified)
	* src/Actions/SelectionAction/AtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/AtomByIdAction.def (modified)
	* src/Actions/SelectionAction/ClearAllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/ClearAllAtomsAction.def (modified)
	* src/Actions/SelectionAction/ClearAllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/ClearAllMoleculesAction.def (modified)
	* src/Actions/SelectionAction/MoleculeByFormulaAction.cpp (modified)
	* src/Actions/SelectionAction/MoleculeByFormulaAction.def (modified)
	* src/Actions/SelectionAction/MoleculeByIdAction.cpp (modified)
	* src/Actions/SelectionAction/MoleculeByIdAction.def (modified)
	* src/Actions/SelectionAction/MoleculeOfAtomAction.cpp (modified)
	* src/Actions/SelectionAction/MoleculeOfAtomAction.def (modified)
	* src/Actions/SelectionAction/NotAllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsAction.def (modified)
	* src/Actions/SelectionAction/NotAllAtomsInsideCuboidAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsInsideCuboidAction.def (modified)
	* src/Actions/SelectionAction/NotAllAtomsInsideSphereAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsInsideSphereAction.def (modified)
	* src/Actions/SelectionAction/NotAllAtomsOfMoleculeAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsOfMoleculeAction.def (modified)
	* src/Actions/SelectionAction/NotAllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllMoleculesAction.def (modified)
	* src/Actions/SelectionAction/NotAtomByElementAction.cpp (modified)
	* src/Actions/SelectionAction/NotAtomByElementAction.def (modified)
	* src/Actions/SelectionAction/NotAtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/NotAtomByIdAction.def (modified)
	* src/Actions/SelectionAction/NotMoleculeByFormulaAction.cpp (modified)
	* src/Actions/SelectionAction/NotMoleculeByFormulaAction.def (modified)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.cpp (modified)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.def (modified)
	* src/Actions/SelectionAction/NotMoleculeOfAtomAction.cpp (modified)
	* src/Actions/SelectionAction/NotMoleculeOfAtomAction.def (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.def (modified)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.def (modified)
	* src/Actions/UndoAction.cpp (added)
	* src/Actions/UndoAction.def (moved)
	* src/Actions/UndoAction.hpp (added)
	* src/Actions/ValueStorage.cpp (modified)
	* src/Actions/ValueStorage.hpp (modified)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.cpp (modified)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.def (modified)
	* src/Actions/WorldAction/BoundInBoxAction.cpp (modified)
	* src/Actions/WorldAction/BoundInBoxAction.def (modified)
	* src/Actions/WorldAction/CenterInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterInBoxAction.def (modified)
	* src/Actions/WorldAction/CenterOnEdgeAction.cpp (modified)
	* src/Actions/WorldAction/CenterOnEdgeAction.def (modified)
	* src/Actions/WorldAction/ChangeBoxAction.cpp (modified)
	* src/Actions/WorldAction/ChangeBoxAction.def (modified)
	* src/Actions/WorldAction/InputAction.cpp (modified)
	* src/Actions/WorldAction/InputAction.def (modified)
	* src/Actions/WorldAction/OutputAction.cpp (modified)
	* src/Actions/WorldAction/OutputAction.def (modified)
	* src/Actions/WorldAction/RepeatBoxAction.cpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.def (modified)
	* src/Actions/WorldAction/ScaleBoxAction.cpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.def (modified)
	* src/Actions/WorldAction/SetDefaultNameAction.cpp (modified)
	* src/Actions/WorldAction/SetDefaultNameAction.def (modified)
	* src/Actions/WorldAction/SetGaussianBasisAction.cpp (modified)
	* src/Actions/WorldAction/SetGaussianBasisAction.def (modified)
	* src/Actions/WorldAction/SetOutputFormatsAction.cpp (modified)
	* src/Actions/WorldAction/SetOutputFormatsAction.def (modified)
	* src/Actions/convert5.sh (added)
	* src/CommandLineParser.cpp (deleted)
	* src/Makefile.am (modified)
	* src/Patterns/Registry.hpp (modified)
	* src/Patterns/Registry_impl.hpp (modified)
	* src/UIElements/CommandLineUI/CommandLineParser.cpp (added)
	* src/UIElements/CommandLineUI/CommandLineParser.hpp (moved)
	* src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified)
	* src/UIElements/CommandLineUI/Query/AtomCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/AtomsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/BooleanCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/BoxCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/DoubleCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/DoublesCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/ElementCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/ElementsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/EmptyCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/FileCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/IntCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/IntsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/MoleculeCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/MoleculesCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/StringCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/StringsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/VectorCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/Query/VectorsCommandLineQuery.cpp (modified)
	* src/UIElements/CommandLineUI/TypeEnumContainer.cpp (added)
	* src/UIElements/CommandLineUI/TypeEnumContainer.hpp (added)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Dialog.hpp (modified)
	* src/UIElements/Makefile.am (modified)
	* src/UIElements/Menu/MenuDescription.cpp (modified)
	* src/UIElements/Menu/MenuDescription.hpp (modified)
	* src/UIElements/Menu/TextMenu.cpp (modified)
	* src/UIElements/Menu/TextMenu.hpp (modified)
	* src/UIElements/Qt4/Pipe/AtomQtQueryPipe.cpp (modified)
	* src/UIElements/Qt4/Pipe/AtomsQtQueryPipe.cpp (modified)
	* src/UIElements/Qt4/Pipe/MoleculeQtQueryPipe.cpp (modified)
	* src/UIElements/Qt4/Pipe/MoleculesQtQueryPipe.cpp (modified)
	* src/UIElements/Qt4/QtDialog.hpp (modified)
	* src/UIElements/Qt4/QtMainWindow.cpp (modified)
	* src/UIElements/TextUI/TextWindow.cpp (modified)
	* src/UIElements/TextUI/TextWindow.hpp (modified)
	* src/World.cpp (modified)
	* src/World.hpp (modified)
	* src/World_calculations.hpp (modified)
	* src/builder.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_dynamics.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/unittests/ActionSequenceTest.cpp (modified)
	* src/unittests/Makefile.am (modified)
	* src/unittests/MenuDescriptionUnitTest.cpp (modified)
	* src/unittests/MenuDescriptionUnitTest.hpp (modified)
	* src/unittests/RegistryUnitTest.cpp (added)
	* src/unittests/RegistryUnitTest.hpp (added)
	* src/unittests/atomsCalculationTest.cpp (modified)
	* tests/regression/testsuite-simple_configuration.at (modified)

	Huge refactoring: Introduction of Traits to Actions.

	This change is ...


Sat, 30 Oct 2010 18:44:28 GMT Frederik Heber <heber@…> [df32ee]
	* src/Actions/Action.cpp (modified)
	* src/Actions/Action.hpp (modified)
	* src/Actions/ActionTraits.cpp (added)
	* src/Actions/ActionTraits.hpp (added)
	* src/Actions/Action_impl_header.hpp (modified)
	* src/Actions/Makefile.am (modified)

	New class ActionTrait(s).

	- ActionTrait is the template class that ...


Thu, 14 Oct 2010 10:00:28 GMT Frederik Heber <heber@…> [7230be]
	* src/Actions/CommandAction/WarrantyAction.cpp (added)
	* src/Actions/CommandAction/WarrantyAction.def (added)
	* src/Actions/CommandAction/WarrantyAction.hpp (added)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/builder.cpp (modified)
	* tests/regression/testsuite-standard_options.at (modified)

	Added WarrantyAction.

	This closed ticket #117.


Sat, 28 Aug 2010 06:08:52 GMT Frederik Heber <heber@…> [eee966]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp (added)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.def (added)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.hpp (added)
	* src/boundary.cpp (modified)
	* src/boundary.hpp (modified)
	* tests/regression/Filling/3/post/tensid.data (added)
	* tests/regression/Filling/3/post/test.conf (added)
	* tests/regression/Filling/3/post/test.xyz (added)
	* tests/regression/Filling/3/pre/tensid.data (added)
	* tests/regression/Filling/3/pre/test.conf (added)
	* tests/regression/Filling/3/pre/water.data (added)
	* tests/regression/testsuite-filling.at (modified)

	New Action FillVoidWithMoleculeAction.

	- in contrast to ...


Sat, 28 Aug 2010 00:58:44 GMT Frederik Heber <heber@…> [1a7fd2]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/MoleculeAction/CopyAction.cpp (added)
	* src/Actions/MoleculeAction/CopyAction.def (added)
	* src/Actions/MoleculeAction/CopyAction.hpp (added)
	* tests/regression/Molecules/11/post/test-copy.xyz (added)
	* tests/regression/Molecules/11/pre/test.xyz (added)
	* tests/regression/testsuite-molecules.at (modified)

	New Action MoleculeAction/CopyAction.


Sat, 28 Aug 2010 00:57:57 GMT Frederik Heber <heber@…> [c449d9]
	* src/Actions/FragmentationAction/ConstructBondGraphAction.cpp (added)
	* src/Actions/FragmentationAction/ConstructBondGraphAction.def (added)
	* src/Actions/FragmentationAction/ConstructBondGraphAction.hpp (added)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)

	Added new Action ConstructBondGraphAction.


Sat, 28 Aug 2010 00:57:56 GMT Frederik Heber <heber@…> [53d01c]
	* src/Actions/CommandAction/BondLengthTableAction.cpp (moved)
	* src/Actions/CommandAction/BondLengthTableAction.hpp (moved)
	* src/Actions/CommandAction/ElementDbAction.cpp (moved)
	* src/Actions/CommandAction/ElementDbAction.hpp (moved)
	* src/Actions/CommandAction/FastParsingAction.cpp (moved)
	* src/Actions/CommandAction/FastParsingAction.hpp (moved)
	* src/Actions/CommandAction/HelpAction.cpp (moved)
	* src/Actions/CommandAction/HelpAction.hpp (moved)
	* src/Actions/CommandAction/VerboseAction.cpp (moved)
	* src/Actions/CommandAction/VerboseAction.hpp (moved)
	* src/Actions/CommandAction/VersionAction.cpp (moved)
	* src/Actions/CommandAction/VersionAction.hpp (moved)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/CommandLineParser.hpp (modified)
	* src/UIElements/CommandLineUI/CommandLineWindow.hpp (modified)

	Renamed dir Actions/CmdAction -> Actions/CommandAction, renamed class ...


Sat, 28 Aug 2010 00:52:58 GMT Frederik Heber <heber@…> [9ee38b]
	* src/Actions/Action_impl_header.hpp (modified)
	* src/Actions/Action_impl_post.hpp (deleted)
	* src/Actions/Action_impl_pre.hpp (modified)
	* src/Actions/AnalysisAction/MolecularVolumeAction.cpp (modified)
	* src/Actions/AnalysisAction/MolecularVolumeAction.def (added)
	* src/Actions/AnalysisAction/MolecularVolumeAction.hpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.def (added)
	* src/Actions/AnalysisAction/PairCorrelationAction.hpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.def (added)
	* src/Actions/AnalysisAction/PointCorrelationAction.hpp (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.def (added)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.hpp (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.def (added)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.hpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Makefile.am (modified)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Dialog.hpp (modified)
	* src/UIElements/QT4/QTDialog.cpp (modified)
	* src/UIElements/TextUI/TextDialog.cpp (modified)
	* src/unittests/Makefile.am (modified)

	Extended macro framework.

	Extensions:
	- all central definitions ...


Thu, 12 Aug 2010 15:08:47 GMT Frederik Heber <heber@…> [51769f]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/AtomByElementAction.cpp (added)
	* src/Actions/SelectionAction/AtomByElementAction.hpp (added)
	* src/Actions/SelectionAction/MoleculeByFormulaAction.cpp (added)
	* src/Actions/SelectionAction/MoleculeByFormulaAction.hpp (added)
	* src/Actions/SelectionAction/NotAtomByElementAction.cpp (added)
	* src/Actions/SelectionAction/NotAtomByElementAction.hpp (added)
	* src/Actions/SelectionAction/NotMoleculeByFormulaAction.cpp (added)
	* src/Actions/SelectionAction/NotMoleculeByFormulaAction.hpp (added)

	Added (un)select-molecule-by-formula/..-atom-by-element actions..


Mon, 09 Aug 2010 17:57:50 GMT Frederik Heber <heber@…> [1cc87e]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsInsideCuboidAction.cpp (added)
	* src/Actions/SelectionAction/AllAtomsInsideCuboidAction.hpp (added)
	* src/Actions/SelectionAction/AllAtomsInsideSphereAction.cpp (added)
	* src/Actions/SelectionAction/AllAtomsInsideSphereAction.hpp (added)
	* src/Actions/SelectionAction/NotAllAtomsInsideCuboidAction.cpp (added)
	* src/Actions/SelectionAction/NotAllAtomsInsideCuboidAction.hpp (added)
	* src/Actions/SelectionAction/NotAllAtomsInsideSphereAction.cpp (added)
	* src/Actions/SelectionAction/NotAllAtomsInsideSphereAction.hpp (added)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.cpp (deleted)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.hpp (deleted)
	* src/Makefile.am (modified)
	* tests/regression/Simple_configuration/8/post/test-cuboid.xyz-sorted (added)
	* tests/regression/Simple_configuration/8/post/test-sphere.xyz-sorted (moved)
	* tests/regression/Simple_configuration/8/post/test-withoutcuboid.xyz-sorted (added)
	* tests/regression/Simple_configuration/8/post/test-withoutsphere.xyz-sorted (added)
	* tests/regression/Simple_configuration/8/post/test.xyz-sorted (modified)
	* tests/regression/Simple_configuration/8/pre/test.conf (deleted)
	* tests/regression/Simple_configuration/8/pre/test.xyz (added)
	* tests/regression/testsuite-simple_configuration.at (modified)

	Added select-atoms-inside-sphere/cuboid and unselect-..

	- new ...


Mon, 09 Aug 2010 15:03:05 GMT Frederik Heber <heber@…> [22c44bf]
	* src/Actions/AtomAction/RotateAroundOriginByAngleAction.cpp (added)
	* src/Actions/AtomAction/RotateAroundOriginByAngleAction.hpp (moved)
	* src/Actions/AtomAction/TranslateAction.hpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/MoleculeAction/RotateAroundOriginByAngleAction.cpp (deleted)
	* tests/regression/testsuite-molecules.at (modified)

	Changed RotateAroundOriginByAngleAction from acting on molecules to ...


Mon, 09 Aug 2010 14:13:27 GMT Frederik Heber <heber@…> [34c338]
	* src/Actions/AtomAction/TranslateAction.cpp (added)
	* src/Actions/AtomAction/TranslateAction.hpp (moved)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/MoleculeAction/TranslateAction.cpp (deleted)
	* tests/regression/testsuite-molecules.at (modified)

	Changed TranslateAction from acting on molecules to acting on ...


Mon, 09 Aug 2010 13:21:21 GMT Frederik Heber <heber@…> [75a80f]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/NotMoleculeOfAtomAction.cpp (added)
	* src/Actions/SelectionAction/NotMoleculeOfAtomAction.hpp (added)

	New selection: unselect-molecule-of-atom.


Mon, 09 Aug 2010 13:21:21 GMT Frederik Heber <heber@…> [381c5f]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsOfMoleculeAction.cpp (added)
	* src/Actions/SelectionAction/NotAllAtomsOfMoleculeAction.hpp (added)

	New selection: unselect-molecules-atoms.


Mon, 09 Aug 2010 13:21:12 GMT Frederik Heber <heber@…> [481e92]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/MoleculeOfAtomAction.cpp (added)
	* src/Actions/SelectionAction/MoleculeOfAtomAction.hpp (added)

	New selection: select-molecule-of-atom.


Mon, 09 Aug 2010 12:57:20 GMT Frederik Heber <heber@…> [770287]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsOfMoleculeAction.cpp (added)
	* src/Actions/SelectionAction/AllAtomsOfMoleculeAction.hpp (added)

	new selection: select-molecules-atoms.


Mon, 09 Aug 2010 12:49:19 GMT Frederik Heber <heber@…> [2218d94]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/ClearAllMoleculesAction.cpp (added)
	* src/Actions/SelectionAction/ClearAllMoleculesAction.hpp (added)

	New selection: clear-molecule-selection.


Mon, 09 Aug 2010 12:46:00 GMT Frederik Heber <heber@…> [e212ff]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/ClearAllAtomsAction.cpp (added)
	* src/Actions/SelectionAction/ClearAllAtomsAction.hpp (added)

	New selection: clear-atom-selection.


Fri, 06 Aug 2010 13:32:19 GMT Frederik Heber <heber@…> [eaf4ae]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/MoleculeAction/RotateAroundOriginByAngleAction.cpp (added)
	* src/Actions/MoleculeAction/RotateAroundOriginByAngleAction.hpp (added)
	* src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp (added)
	* src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.hpp (added)

	Added two new actions.

	- RotateAroundOriginByAngle: Rotates around ...


Fri, 06 Aug 2010 09:34:59 GMT Frederik Heber <heber@…> [d223d5]
	* Makefile.am (modified)
	* TestRunnerClient.cpp (added)
	* TestRunnerClient.h (added)
	* config/ltmain.sh (added)
	* configure.ac (modified)
	* libmolecuilder_config.h.in (added)
	* m4/gwqt4.m4 (modified)
	* molecuilder.pc.in (added)
	* src/Actions/Action.cpp (modified)
	* src/Actions/AnalysisAction/MolecularVolumeAction.cpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.hpp (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (modified)
	* src/Actions/AtomAction/AddAction.cpp (modified)
	* src/Actions/AtomAction/AddAction.hpp (modified)
	* src/Actions/AtomAction/ChangeElementAction.cpp (modified)
	* src/Actions/AtomAction/RemoveAction.cpp (modified)
	* src/Actions/CmdAction/BondLengthTableAction.cpp (modified)
	* src/Actions/CmdAction/ElementDbAction.cpp (modified)
	* src/Actions/CmdAction/FastParsingAction.cpp (modified)
	* src/Actions/CmdAction/VerboseAction.cpp (modified)
	* src/Actions/CmdAction/VersionAction.cpp (modified)
	* src/Actions/ErrorAction.cpp (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.cpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/MoleculeAction/BondFileAction.cpp (modified)
	* src/Actions/MoleculeAction/ChangeNameAction.cpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.hpp (modified)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (modified)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveTemperatureAction.cpp (modified)
	* src/Actions/MoleculeAction/SuspendInWaterAction.cpp (modified)
	* src/Actions/MoleculeAction/TranslateAction.cpp (modified)
	* src/Actions/MoleculeAction/TranslateAction.hpp (modified)
	* src/Actions/MoleculeAction/VerletIntegrationAction.cpp (modified)
	* src/Actions/ParserAction/LoadXyzAction.cpp (modified)
	* src/Actions/ParserAction/SaveXyzAction.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/AllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/AtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/MoleculeByIdAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/NotAtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.cpp (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified)
	* src/Actions/ValueStorage.cpp (moved)
	* src/Actions/ValueStorage.hpp (moved)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.cpp (modified)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.hpp (modified)
	* src/Actions/WorldAction/BoundInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterOnEdgeAction.cpp (modified)
	* src/Actions/WorldAction/ChangeBoxAction.cpp (modified)
	* src/Actions/WorldAction/InputAction.cpp (modified)
	* src/Actions/WorldAction/OutputAction.cpp (modified)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.cpp (modified)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.hpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.cpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.hpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.cpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.hpp (modified)
	* src/Actions/WorldAction/SetDefaultNameAction.cpp (modified)
	* src/Actions/WorldAction/SetGaussianBasisAction.cpp (modified)
	* src/Actions/WorldAction/SetOutputFormatsAction.cpp (modified)
	* src/Box.cpp (modified)
	* src/Box.hpp (modified)
	* src/CommandLineParser.cpp (modified)
	* src/ConfigFileBuffer.cpp (modified)
	* src/Descriptors/AtomSelectionDescriptor.cpp (modified)
	* src/Descriptors/MoleculeSelectionDescriptor.cpp (modified)
	* src/Descriptors/SelectiveIterator_impl.hpp (modified)
	* src/Exceptions/Makefile.am (added)
	* src/Formula.hpp (modified)
	* src/Helpers/Info.cpp (moved)
	* src/Helpers/Info.hpp (moved)
	* src/Helpers/Log.cpp (moved)
	* src/Helpers/Log.hpp (moved)
	* src/Helpers/Makefile.am (added)
	* src/Helpers/MemDebug.hpp (modified)
	* src/Helpers/Verbose.cpp (moved)
	* src/Helpers/Verbose.hpp (moved)
	* src/Helpers/errorlogger.cpp (moved)
	* src/Helpers/errorlogger.hpp (moved)
	* src/Helpers/helpers.cpp (moved)
	* src/Helpers/helpers.hpp (moved)
	* src/Helpers/logger.cpp (moved)
	* src/Helpers/logger.hpp (moved)
	* src/Legacy/oldmenu.cpp (modified)
	* src/LinearAlgebra/Line.cpp (moved)
	* src/LinearAlgebra/Line.hpp (moved)
	* src/LinearAlgebra/Makefile.am (added)
	* src/LinearAlgebra/Matrix.cpp (moved)
	* src/LinearAlgebra/Matrix.hpp (moved)
	* src/LinearAlgebra/MatrixContent.hpp (moved)
	* src/LinearAlgebra/Plane.cpp (moved)
	* src/LinearAlgebra/Plane.hpp (moved)
	* src/LinearAlgebra/Space.cpp (moved)
	* src/LinearAlgebra/Space.hpp (moved)
	* src/LinearAlgebra/Vector.cpp (moved)
	* src/LinearAlgebra/Vector.hpp (moved)
	* src/LinearAlgebra/VectorContent.hpp (moved)
	* src/LinearAlgebra/VectorSet.hpp (moved)
	* src/LinearAlgebra/gslmatrix.cpp (moved)
	* src/LinearAlgebra/gslmatrix.hpp (moved)
	* src/LinearAlgebra/gslvector.cpp (moved)
	* src/LinearAlgebra/gslvector.hpp (moved)
	* src/LinearAlgebra/linearsystemofequations.cpp (moved)
	* src/LinearAlgebra/linearsystemofequations.hpp (moved)
	* src/Makefile.am (modified)
	* src/Parser/FormatParserStorage.cpp (modified)
	* src/Parser/Makefile.am (added)
	* src/Parser/MpqcParser.cpp (modified)
	* src/Parser/PcpParser.cpp (modified)
	* src/Shapes/BaseShapes.cpp (modified)
	* src/Shapes/ShapeOps_impl.hpp (modified)
	* src/ThermoStatContainer.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Dialog.hpp (modified)
	* src/UIElements/Makefile.am (modified)
	* src/UIElements/QT4/IntQTQuery.ui (added)
	* src/UIElements/QT4/IntsQTQuery.ui (added)
	* src/UIElements/QT4/QTDialog.cpp (modified)
	* src/UIElements/QT4/QTMainWindow.cpp (modified)
	* src/UIElements/TextUI/TextDialog.cpp (modified)
	* src/UIElements/TextUI/TextWindow.cpp (modified)
	* src/UIElements/Views/QT4/QTStatusBar.cpp (modified)
	* src/World.cpp (modified)
	* src/analysis_bonds.cpp (modified)
	* src/analysis_correlation.cpp (modified)
	* src/analysis_correlation.hpp (modified)
	* src/analyzer.cpp (modified)
	* src/atom.cpp (modified)
	* src/atom_atominfo.hpp (modified)
	* src/atom_bondedparticle.cpp (modified)
	* src/atom_graphnode.cpp (modified)
	* src/atom_trajectoryparticle.cpp (modified)
	* src/atom_trajectoryparticleinfo.hpp (modified)
	* src/bond.cpp (modified)
	* src/bondgraph.cpp (modified)
	* src/boundary.cpp (modified)
	* src/builder.cpp (modified)
	* src/config.cpp (modified)
	* src/datacreator.cpp (modified)
	* src/ellipsoid.cpp (modified)
	* src/graph.cpp (modified)
	* src/joiner.cpp (modified)
	* src/leastsquaremin.cpp (modified)
	* src/linkedcell.cpp (modified)
	* src/linkedcell.hpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_dynamics.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/molecule_pointcloud.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/parser.cpp (modified)
	* src/periodentafel.cpp (modified)
	* src/stackclass.hpp (modified)
	* src/tesselation.cpp (modified)
	* src/tesselation.hpp (modified)
	* src/tesselationhelpers.cpp (modified)
	* src/test/ActOnAlltest.hpp (modified)
	* src/triangleintersectionlist.cpp (modified)
	* src/unittests/ActOnAllUnitTest.cpp (modified)
	* src/unittests/BoxUnittest.cpp (modified)
	* src/unittests/LineUnittest.cpp (modified)
	* src/unittests/LineUnittest.hpp (modified)
	* src/unittests/Makefile.am (modified)
	* src/unittests/MatrixUnittest.cpp (modified)
	* src/unittests/PlaneUnittest.cpp (modified)
	* src/unittests/PlaneUnittest.hpp (modified)
	* src/unittests/ShapeUnittest.cpp (modified)
	* src/unittests/ShapeUnittest.hpp (modified)
	* src/unittests/bondgraphunittest.cpp (modified)
	* src/unittests/gslmatrixsymmetricunittest.hpp (modified)
	* src/unittests/gslmatrixunittest.hpp (modified)
	* src/unittests/gslvectorunittest.hpp (modified)
	* src/unittests/infounittest.cpp (modified)
	* src/unittests/linearsystemofequationsunittest.cpp (modified)
	* src/unittests/linearsystemofequationsunittest.hpp (modified)
	* src/unittests/logunittest.cpp (modified)
	* src/unittests/memoryallocatorunittest.cpp (modified)
	* src/unittests/stackclassunittest.cpp (modified)
	* src/unittests/tesselation_insideoutsideunittest.cpp (modified)
	* src/unittests/vectorunittest.cpp (modified)
	* src/unittests/vectorunittest.hpp (modified)
	* src/vector_ops.cpp (modified)

	Merge branch 'SharedLibraries' into stable

	- BUGFIX: MemDebug.cpp ...


Thu, 05 Aug 2010 15:48:55 GMT Frederik Heber <heber@…> [861874]
	* Makefile.am (modified)
	* TestRunnerClient.cpp (added)
	* TestRunnerClient.h (added)
	* config/ltmain.sh (added)
	* configure.ac (modified)
	* libmolecuilder_config.h.in (added)
	* m4/gwqt4.m4 (modified)
	* molecuilder.pc.in (added)
	* src/Actions/AnalysisAction/MolecularVolumeAction.cpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (modified)
	* src/Actions/AtomAction/AddAction.cpp (modified)
	* src/Actions/AtomAction/ChangeElementAction.cpp (modified)
	* src/Actions/AtomAction/RemoveAction.cpp (modified)
	* src/Actions/CmdAction/BondLengthTableAction.cpp (modified)
	* src/Actions/CmdAction/ElementDbAction.cpp (modified)
	* src/Actions/CmdAction/FastParsingAction.cpp (modified)
	* src/Actions/CmdAction/VerboseAction.cpp (modified)
	* src/Actions/CmdAction/VersionAction.cpp (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.cpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MoleculeAction/BondFileAction.cpp (modified)
	* src/Actions/MoleculeAction/ChangeNameAction.cpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (modified)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveTemperatureAction.cpp (modified)
	* src/Actions/MoleculeAction/SuspendInWaterAction.cpp (modified)
	* src/Actions/MoleculeAction/TranslateAction.cpp (modified)
	* src/Actions/MoleculeAction/VerletIntegrationAction.cpp (modified)
	* src/Actions/ParserAction/LoadXyzAction.cpp (modified)
	* src/Actions/ParserAction/SaveXyzAction.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/AllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/AtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/MoleculeByIdAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsAction.cpp (modified)
	* src/Actions/SelectionAction/NotAllMoleculesAction.cpp (modified)
	* src/Actions/SelectionAction/NotAtomByIdAction.cpp (modified)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.cpp (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified)
	* src/Actions/ValueStorage.cpp (moved)
	* src/Actions/ValueStorage.hpp (moved)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.cpp (modified)
	* src/Actions/WorldAction/BoundInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterOnEdgeAction.cpp (modified)
	* src/Actions/WorldAction/ChangeBoxAction.cpp (modified)
	* src/Actions/WorldAction/InputAction.cpp (modified)
	* src/Actions/WorldAction/OutputAction.cpp (modified)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.cpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.cpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.cpp (modified)
	* src/Actions/WorldAction/SetDefaultNameAction.cpp (modified)
	* src/Actions/WorldAction/SetGaussianBasisAction.cpp (modified)
	* src/Actions/WorldAction/SetOutputFormatsAction.cpp (modified)
	* src/Makefile.am (modified)
	* src/Parser/Makefile.am (added)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Makefile.am (modified)
	* src/UIElements/QT4/IntQTQuery.ui (added)
	* src/UIElements/QT4/IntsQTQuery.ui (added)
	* src/unittests/Makefile.am (modified)

	libMolecuilderAction is now a shared lib via libtool.

	This is all ...


Wed, 04 Aug 2010 13:25:25 GMT Tillmann Crueger <crueger@…> [796aa6]
	* Makefile.am (modified)
	* src/Actions/Makefile.am (modified)
	* src/Helpers/Assert.cpp (modified)
	* src/Makefile.am (modified)
	* src/UIElements/Makefile.am (modified)

	Added faster unity build target to makefiles

	- unity build means a ...


Mon, 26 Jul 2010 18:06:18 GMT Frederik Heber <heber@…> [e076cd]
	* src/Actions/ActionCalls.hpp (deleted)
	* src/Actions/AnalysisAction/MolecularVolumeAction.hpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.hpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.hpp (modified)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.hpp (modified)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.hpp (modified)
	* src/Actions/AtomAction/AddAction.hpp (modified)
	* src/Actions/AtomAction/ChangeElementAction.hpp (modified)
	* src/Actions/AtomAction/RemoveAction.hpp (modified)
	* src/Actions/CmdAction/BondLengthTableAction.hpp (modified)
	* src/Actions/CmdAction/ElementDbAction.hpp (modified)
	* src/Actions/CmdAction/FastParsingAction.hpp (modified)
	* src/Actions/CmdAction/HelpAction.hpp (modified)
	* src/Actions/CmdAction/VerboseAction.hpp (modified)
	* src/Actions/CmdAction/VersionAction.hpp (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.hpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.hpp (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.hpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MoleculeAction/BondFileAction.hpp (modified)
	* src/Actions/MoleculeAction/ChangeNameAction.hpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.hpp (modified)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp (modified)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.hpp (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.hpp (modified)
	* src/Actions/MoleculeAction/SaveTemperatureAction.hpp (modified)
	* src/Actions/MoleculeAction/SuspendInWaterAction.hpp (modified)
	* src/Actions/MoleculeAction/TranslateAction.hpp (modified)
	* src/Actions/MoleculeAction/VerletIntegrationAction.hpp (modified)
	* src/Actions/ParserAction/LoadXyzAction.hpp (modified)
	* src/Actions/ParserAction/SaveXyzAction.hpp (modified)
	* src/Actions/SelectionAction/AllAtomsAction.hpp (modified)
	* src/Actions/SelectionAction/AllMoleculesAction.hpp (modified)
	* src/Actions/SelectionAction/AtomByIdAction.hpp (modified)
	* src/Actions/SelectionAction/MoleculeByIdAction.hpp (modified)
	* src/Actions/SelectionAction/NotAllAtomsAction.hpp (modified)
	* src/Actions/SelectionAction/NotAllMoleculesAction.hpp (modified)
	* src/Actions/SelectionAction/NotAtomByIdAction.hpp (modified)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.hpp (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.hpp (modified)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.hpp (modified)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.hpp (modified)
	* src/Actions/WorldAction/BoundInBoxAction.hpp (modified)
	* src/Actions/WorldAction/CenterInBoxAction.hpp (modified)
	* src/Actions/WorldAction/CenterOnEdgeAction.hpp (modified)
	* src/Actions/WorldAction/ChangeBoxAction.hpp (modified)
	* src/Actions/WorldAction/InputAction.hpp (modified)
	* src/Actions/WorldAction/OutputAction.hpp (modified)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.hpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.hpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.hpp (modified)
	* src/Actions/WorldAction/SetDefaultNameAction.hpp (modified)
	* src/Actions/WorldAction/SetGaussianBasisAction.hpp (modified)
	* src/Actions/WorldAction/SetOutputFormatsAction.hpp (modified)

	Moved each action call function definition into the header file of ...


Mon, 26 Jul 2010 13:37:29 GMT Frederik Heber <heber@…> [aa3d7a]
	* src/Actions/ActionCalls.hpp (added)
	* src/Actions/Makefile.am (modified)

	ActionCalls.hpp header added that contains concise function calls of ...


Sun, 25 Jul 2010 21:41:34 GMT Frederik Heber <heber@…> [e472eab]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/AllAtomsAction.cpp (added)
	* src/Actions/SelectionAction/AllAtomsAction.hpp (added)
	* src/Actions/SelectionAction/AllMoleculesAction.cpp (added)
	* src/Actions/SelectionAction/AllMoleculesAction.hpp (added)
	* src/Actions/SelectionAction/NotAllAtomsAction.cpp (added)
	* src/Actions/SelectionAction/NotAllAtomsAction.hpp (added)
	* src/Actions/SelectionAction/NotAllMoleculesAction.cpp (added)
	* src/Actions/SelectionAction/NotAllMoleculesAction.hpp (added)
	* src/World.cpp (modified)
	* src/World.hpp (modified)

	Added new all/none selection actions for atoms and molecules.

	- new ...


Sun, 25 Jul 2010 19:07:06 GMT Frederik Heber <heber@…> [533838]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/SelectionAction/AtomByIdAction.cpp (added)
	* src/Actions/SelectionAction/AtomByIdAction.hpp (added)
	* src/Actions/SelectionAction/MoleculeByIdAction.cpp (added)
	* src/Actions/SelectionAction/MoleculeByIdAction.hpp (added)
	* src/Actions/SelectionAction/NotAtomByIdAction.cpp (added)
	* src/Actions/SelectionAction/NotAtomByIdAction.hpp (added)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.cpp (added)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.hpp (added)
	* src/CommandLineParser.cpp (modified)
	* src/World.cpp (modified)
	* src/World.hpp (modified)

	Merge branch 'SelectionActions' into ...


Thu, 22 Jul 2010 19:11:35 GMT Frederik Heber <heber@…> [d02e07]
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationAction.hpp (modified)
	* src/Actions/AnalysisAction/PointCorrelationAction.cpp (added)
	* src/Actions/AnalysisAction/PointCorrelationAction.hpp (added)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (added)
	* src/Actions/AnalysisAction/SurfaceCorrelationAction.hpp (added)
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/MapOfActions.hpp (modified)

	Split PairCorrelation into Pair, Point and SurfaceCorrelation.

	- ...


Thu, 22 Jul 2010 16:11:07 GMT Frederik Heber <heber@…> [e2009b]
	* src/Actions/Makefile.am (modified)
	* src/Actions/SelectionAction/AtomByIdAction.cpp (added)
	* src/Actions/SelectionAction/AtomByIdAction.hpp (added)
	* src/Actions/SelectionAction/MoleculeByIdAction.cpp (added)
	* src/Actions/SelectionAction/MoleculeByIdAction.hpp (added)
	* src/Actions/SelectionAction/NotAtomByIdAction.cpp (added)
	* src/Actions/SelectionAction/NotAtomByIdAction.hpp (added)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.cpp (added)
	* src/Actions/SelectionAction/NotMoleculeByIdAction.hpp (added)

	Added a number of SelectionActions.

	- (un)select atom/molecule.
	- ...


Mon, 05 Jul 2010 17:03:53 GMT Frederik Heber <heber@…> [361ba7]
	* src/Actions/Makefile.am (modified)

	Trailing whitespace in src/Actions/Makefile.am


Fri, 02 Jul 2010 13:44:23 GMT Frederik Heber <heber@…> [b9c847]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/WorldAction/CenterInBoxAction.cpp (modified)
	* src/Actions/WorldAction/CenterOnEdgeAction.cpp (modified)
	* src/Actions/WorldAction/ChangeBoxAction.cpp (modified)
	* src/Actions/WorldAction/RepeatBoxAction.cpp (modified)
	* src/Actions/WorldAction/ScaleBoxAction.cpp (modified)
	* src/Actions/WorldAction/SetOutputFormatsAction.cpp (added)
	* src/Actions/WorldAction/SetOutputFormatsAction.hpp (added)
	* src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified)
	* src/World.cpp (modified)
	* src/builder.cpp (modified)
	* tests/regression/testsuite-domain.at (modified)
	* tests/regression/testsuite-simple_configuration.at (modified)
	* tests/regression/testsuite-tesselation.at (modified)

	New SetOutputFormatsAction introduced.

	Fixes:
	- World::setDomain() ...


Fri, 25 Jun 2010 08:11:20 GMT Frederik Heber <heber@…> [4f7f34e]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/WorldAction/InputAction.cpp (added)
	* src/Actions/WorldAction/InputAction.hpp (added)
	* src/Actions/WorldAction/OutputAction.cpp (added)
	* src/Actions/WorldAction/OutputAction.hpp (added)
	* src/CommandLineParser.cpp (modified)
	* src/Makefile.am (modified)
	* src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified)
	* src/builder.cpp (modified)
	* tests/regression/testsuite-simple_configuration.at (modified)
	* tests/regression/testsuite-standard_options.at (modified)

	ParseCommandLineOptions() is not used anymore.

	- new Actions ...


Wed, 09 Jun 2010 14:04:54 GMT Frederik Heber <heber@…> [104524]
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (modified)
	* src/Actions/AnalysisAction/PairCorrelationToPointAction.cpp (deleted)
	* src/Actions/AnalysisAction/PairCorrelationToPointAction.hpp (deleted)
	* src/Actions/AnalysisAction/PairCorrelationToSurfaceAction.cpp (deleted)
	* src/Actions/AnalysisAction/PairCorrelationToSurfaceAction.hpp (deleted)
	* src/Actions/AtomAction/ChangeElementAction.cpp (modified)
	* src/Actions/Makefile.am (modified)
	* src/Legacy/oldmenu.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified)
	* src/UIElements/CommandLineUI/CommandLineDialog.hpp (modified)
	* src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Dialog.hpp (modified)
	* src/UIElements/TextUI/TextDialog.cpp (modified)
	* src/UIElements/TextUI/TextDialog.hpp (modified)

	Changed PairCorrelationAction to incorporate all three cases and ...


Mon, 07 Jun 2010 23:53:44 GMT Frederik Heber <heber@…> [0286bc]
	* src/Actions/Makefile.am (modified)
	* src/Actions/MapOfActions.cpp (modified)
	* src/Actions/Values.hpp (added)
	* src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified)

	BUGFIX: ListOfDoubles changed to Box and Vector.

	- ListOfDoubles is ...


Tue, 18 May 2010 15:18:24 GMT Frederik Heber <heber@…> [5079a0]
	* Makefile.am (modified)
	* configure.ac (modified)
	* src/Actions/Makefile.am (added)
	* src/Makefile.am (modified)
	* src/UIElements/CommandLineUI/CommandLineDialog.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineDialog.hpp (moved)
	* src/UIElements/CommandLineUI/CommandLineStatusIndicator.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineStatusIndicator.hpp (moved)
	* src/UIElements/CommandLineUI/CommandLineUIFactory.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineUIFactory.hpp (moved)
	* src/UIElements/CommandLineUI/CommandLineWindow.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineWindow.hpp (moved)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/MainWindow.cpp (modified)
	* src/UIElements/Makefile.am (added)
	* src/UIElements/Menu/ActionMenuItem.cpp (moved)
	* src/UIElements/Menu/ActionMenuItem.hpp (moved)
	* src/UIElements/Menu/DisplayMenuItem.cpp (moved)
	* src/UIElements/Menu/DisplayMenuItem.hpp (moved)
	* src/UIElements/Menu/Menu.cpp (moved)
	* src/UIElements/Menu/Menu.hpp (moved)
	* src/UIElements/Menu/MenuItem.cpp (moved)
	* src/UIElements/Menu/MenuItem.hpp (moved)
	* src/UIElements/Menu/SeperatorItem.cpp (moved)
	* src/UIElements/Menu/SeperatorItem.hpp (moved)
	* src/UIElements/Menu/SubMenuItem.cpp (moved)
	* src/UIElements/Menu/SubMenuItem.hpp (moved)
	* src/UIElements/Menu/TextMenu.cpp (moved)
	* src/UIElements/Menu/TextMenu.hpp (moved)
	* src/UIElements/TextUI/TextDialog.cpp (moved)
	* src/UIElements/TextUI/TextDialog.hpp (moved)
	* src/UIElements/TextUI/TextStatusIndicator.cpp (moved)
	* src/UIElements/TextUI/TextStatusIndicator.hpp (moved)
	* src/UIElements/TextUI/TextUIFactory.cpp (moved)
	* src/UIElements/TextUI/TextUIFactory.hpp (moved)
	* src/UIElements/TextUI/TextWindow.cpp (moved)
	* src/UIElements/TextUI/TextWindow.hpp (moved)
	* src/UIElements/UIFactory.cpp (modified)
	* src/UIElements/Views/MethodStringView.cpp (moved)
	* src/UIElements/Views/MethodStringView.hpp (moved)
	* src/UIElements/Views/StreamStringView.cpp (moved)
	* src/UIElements/Views/StreamStringView.hpp (moved)
	* src/UIElements/Views/StringView.cpp (moved)
	* src/UIElements/Views/StringView.hpp (moved)
	* src/UIElements/Views/View.cpp (moved)
	* src/UIElements/Views/View.hpp (moved)

	Actions put into libMolecuilderActions, UIElements into ...