#
# ChangeLog for src/Actions/FragmentationAction/CreateAdjacencyAction.cpp
#
# Generated by Trac 1.4.4
# Jan 8, 2025, 5:02:48 PM

Wed, 02 Mar 2011 21:53:09 GMT Frederik Heber <heber@…> [efe516]
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/Bond/bond.cpp (modified)
	* src/Bond/bond.hpp (modified)
	* src/Graph/BondGraph.hpp (modified)
	* src/Graph/BreadthFirstSearchAdd.cpp (modified)
	* src/Graph/BreadthFirstSearchAdd.hpp (modified)
	* src/atom_bondedparticle.cpp (modified)
	* src/molecule.cpp (modified)
	* src/moleculelist.cpp (modified)

	Removed bond::nr.

	- has only been used by BreadthFirstSearchAdd.
	- ...


Wed, 02 Mar 2011 21:53:08 GMT Frederik Heber <heber@…> [129204]
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.cpp (modified)
	* src/Actions/MoleculeAction/CopyAction.cpp (modified)
	* src/Bond/GraphEdge.cpp (added)
	* src/Bond/GraphEdge.hpp (added)
	* src/Bond/bond.cpp (moved)
	* src/Bond/bond.hpp (moved)
	* src/Graph/BondGraph.cpp (modified)
	* src/Graph/BondGraph.hpp (modified)
	* src/Graph/BreadthFirstSearchAdd.cpp (modified)
	* src/Graph/BreadthFirstSearchAdd.hpp (modified)
	* src/Makefile.am (modified)
	* src/Parser/PdbParser.cpp (modified)
	* src/Parser/TremoloParser.cpp (modified)
	* src/analysis_bonds.cpp (modified)
	* src/analysis_correlation.cpp (modified)
	* src/atom.cpp (modified)
	* src/atom_bondedparticle.cpp (modified)
	* src/boundary.cpp (modified)
	* src/config.cpp (modified)
	* src/graph.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/unittests/AnalysisBondsUnitTest.cpp (modified)
	* src/unittests/BondGraphUnitTest.cpp (modified)
	* src/unittests/CountBondsUnitTest.cpp (modified)
	* src/unittests/ListOfBondsUnitTest.cpp (modified)

	Moved bond.* to Bond/, new class GraphEdge which contains graph parts ...


Tue, 01 Mar 2011 13:17:09 GMT Frederik Heber <heber@…> [632508]
	* src/Actions/CommandAction/BondLengthTableAction.cpp (modified)
	* src/Actions/CommandAction/BondLengthTableAction.def (modified)
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.cpp (modified)
	* src/Actions/MoleculeAction/BondFileAction.cpp (modified)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.cpp (modified)
	* src/Graph/BondGraph.cpp (moved)
	* src/Graph/BondGraph.hpp (moved)
	* src/Makefile.am (modified)
	* src/World.cpp (modified)
	* src/builder_init.cpp (modified)
	* src/config.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/unittests/AnalysisBondsUnitTest.cpp (modified)
	* src/unittests/BondGraphUnitTest.cpp (modified)
	* src/unittests/CountBondsUnitTest.cpp (modified)

	Moved files bondgraph.?pp -> Graph/BondGraph.?pp.


Tue, 01 Mar 2011 13:17:09 GMT Frederik Heber <heber@…> [607eab]
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/bondgraph.cpp (modified)
	* src/bondgraph.hpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)

	BondGraph::...MinMaxDistance() now return range<double> instead of ...


Tue, 01 Mar 2011 13:17:08 GMT Frederik Heber <heber@…> [cff66c]
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/bondgraph.cpp (modified)
	* src/bondgraph.hpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)

	Removed bool is Angstroem from all BondGraph::...() member functions. ...


Tue, 01 Mar 2011 13:17:08 GMT Frederik Heber <heber@…> [0ec7fe]
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/bondgraph.cpp (modified)
	* src/bondgraph.hpp (modified)

	Removed BondGraph::max_distance along with getter and setter.

	- ...


Tue, 01 Mar 2011 13:17:08 GMT Frederik Heber <heber@…> [300220]
	* configure.ac (modified)
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/bondgraph.cpp (modified)
	* src/bondgraph.hpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)

	BondGraph::..MinMaxDistance() changed to use range<double>.

	- ...


Tue, 01 Mar 2011 12:49:28 GMT Frederik Heber <heber@…> [3738f0]
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (modified)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (modified)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.cpp (modified)
	* src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (modified)
	* src/Actions/MoleculeAction/SaveBondsAction.cpp (modified)
	* src/AtomSet.hpp (modified)
	* src/bondgraph.cpp (modified)
	* src/bondgraph.hpp (modified)
	* src/linkedcell.cpp (modified)
	* src/linkedcell.hpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/unittests/AnalysisBondsUnitTest.cpp (modified)
	* src/unittests/BondGraphUnitTest.cpp (modified)
	* src/unittests/CountBondsUnitTest.cpp (modified)
	* tests/Fragmentations/defs.in (modified)
	* tests/regression/Fragmentation/FragmentMolecule/testsuite-fragmentation-fragment-molecule.at (modified)
	* tests/regression/Graph/DepthFirstSearch/testsuite-graph-depth-first-search.at (modified)
	* tests/regression/Molecules/SaveAdjacency/testsuite-molecules-save-adjacency.at (modified)
	* tests/regression/Molecules/SaveBonds/testsuite-molecules-save-bonds.at (modified)

	Moved molecule::CreateAdjacencyList over to class BondGraph.

	to ...


Tue, 01 Mar 2011 10:16:39 GMT Frederik Heber <heber@…> [d4a44c]
	* src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (moved)
	* src/Actions/FragmentationAction/CreateAdjacencyAction.def (moved)
	* src/Actions/FragmentationAction/CreateAdjacencyAction.hpp (moved)
	* src/Actions/Makefile.am (modified)
	* tests/regression/Graph/1/pre/test2.conf (deleted)

	Renamed ConstructBondGraphAction -> CreateAdjacencyAction.