# PLEASE adhere to the alphabetical ordering in this Makefile!
# Also indentation by a single tab

SUBDIRS = Actions UIElements

# this includes source files that need to be present at multiple points
HELPERSOURCE =  \
  Helpers/Assert.cpp \
  Helpers/MemDebug.cpp
  
BASESOURCE = \
  ${HELPERSOURCE} \
  Space.cpp \
  vector.cpp
  
BASEHEADER = \
  ${HELPERHEADER} \
  Space.hpp \
  vector.hpp
		        
ATOMSOURCE = \
  atom.cpp \
  atom_atominfo.cpp \
  atom_bondedparticle.cpp \
  atom_bondedparticleinfo.cpp \
  atom_graphnode.cpp \
  atom_graphnodeinfo.cpp \
  atom_particleinfo.cpp \
  atom_trajectoryparticle.cpp \
  atom_trajectoryparticleinfo.cpp
ATOMHEADER = \
  atom.hpp \
  atom_atominfo.hpp \
  atom_bondedparticle.hpp \
  atom_bondedparticleinfo.hpp \
  atom_graphnode.hpp \
  atom_graphnodeinfo.hpp \
  atom_particleinfo.hpp \
  atom_trajectoryparticle.hpp \
  atom_trajectoryparticleinfo.hpp

LINALGSOURCE = \
  gslmatrix.cpp \
  gslvector.cpp \
  linearsystemofequations.cpp
			   
LINALGHEADER = \
  gslmatrix.hpp \
  gslvector.hpp \
  linearsystemofequations.hpp
			   
ANALYSISSOURCE = \
  analysis_bonds.cpp \
  analysis_correlation.cpp
ANALYSISHEADER = \
  analysis_bonds.hpp \
  analysis_correlation.hpp

ACTIONSSOURCE = \
  Actions/Action.cpp \
  Actions/ActionHistory.cpp \
  Actions/ActionRegistry.cpp \
  Actions/ActionSequence.cpp \
  Actions/ErrorAction.cpp \
  Actions/MakroAction.cpp \
  Actions/ManipulateAtomsProcess.cpp \
  Actions/MethodAction.cpp \
  Actions/Process.cpp

ACTIONSHEADER = \
  Actions/Action.hpp \
  Actions/ActionHistory.hpp \
  Actions/ActionRegistry.hpp \
  Actions/ActionSequence.hpp \
  Actions/Calculation.hpp \
  Actions/Calculation_impl.hpp \
  Actions/ErrorAction.hpp \
  Actions/MakroAction.hpp \
  Actions/ManipulateAtomsProcess.hpp \
  Actions/MapOfActions.hpp \
  Actions/MethodAction.hpp \
  Actions/Process.hpp

EXCEPTIONSOURCE = \
  Exceptions/CustomException.cpp \
  Exceptions/IllegalTypeException.cpp \
  Exceptions/LinearDependenceException.cpp \
  Exceptions/MathException.cpp \
  Exceptions/MissingValueException.cpp \
  Exceptions/NotInvertibleException.cpp \
  Exceptions/ParseError.cpp \
  Exceptions/SkewException.cpp \
  Exceptions/ZeroVectorException.cpp
				  
EXCEPTIONHEADER = \
  Exceptions/CustomException.hpp \
  Exceptions/IllegalTypeException.hpp \
  Exceptions/LinearDependenceException.hpp \
  Exceptions/MathException.hpp \
  Exceptions/MissingValueException.hpp \
  Exceptions/NotInvertibleException.hpp \
  Exceptions/ParseError.hpp \
  Exceptions/SkewException.hpp \
  Exceptions/ZeroVectorException.hpp

PARSERSOURCE = \
  Parser/ChangeTracker.cpp \
  Parser/FormatParser.cpp \
  Parser/FormatParserStorage.cpp \
  Parser/MpqcParser.cpp \
  Parser/PcpParser.cpp \
  Parser/TremoloParser.cpp \
  Parser/XyzParser.cpp

PARSERHEADER = \
  Parser/ChangeTracker.hpp \
  Parser/FormatParser.hpp \
  Parser/FormatParserStorage.hpp \
  Parser/MpqcParser.hpp \
  Parser/PcpParser.hpp \
  Parser/TremoloParser.hpp \
  Parser/XyzParser.hpp

PATTERNSOURCE = \
  Patterns/Observer.cpp
PATTERNHEADER = \
  Patterns/Cacheable.hpp \
  Patterns/Observer.hpp \
  Patterns/Singleton.hpp
  
SHAPESOURCE = \
  Shapes/BaseShapes.cpp \
  Shapes/Shape.cpp \
  Shapes/ShapeOps.cpp
SHAPEHEADER = \
  Shapes/BaseShapes.hpp \
  Shapes/Shape.hpp \
  Shapes/ShapeOps.hpp

  
DESCRIPTORSOURCE = Descriptors/AtomDescriptor.cpp \
  Descriptors/AtomIdDescriptor.cpp \
  Descriptors/AtomSelectionDescriptor.cpp \
  Descriptors/AtomTypeDescriptor.cpp \
  Descriptors/MoleculeDescriptor.cpp \
  Descriptors/MoleculeFormulaDescriptor.cpp \
  Descriptors/MoleculeIdDescriptor.cpp \
  Descriptors/MoleculeNameDescriptor.cpp \
  Descriptors/MoleculePtrDescriptor.cpp \
  Descriptors/MoleculeSelectionDescriptor.cpp
				   

DESCRIPTORHEADER = Descriptors/AtomDescriptor.hpp \
  Descriptors/AtomIdDescriptor.hpp \
  Descriptors/AtomSelectionDescriptor.hpp \
  Descriptors/AtomTypeDescriptor.hpp \
  Descriptors/MoleculeDescriptor.hpp \
  Descriptors/MoleculeFormulaDescriptor.hpp \
  Descriptors/MoleculeIdDescriptor.hpp \
  Descriptors/MoleculeNameDescriptor.hpp \
  Descriptors/MoleculePtrDescriptor.hpp \
  Descriptors/MoleculeSelectionDescriptor.cpp


QTUIMOC_HEADER = UIElements/QT4/QTDialog.hpp \
	UIElements/QT4/QTMainWindow.hpp \
	UIElements/Menu/QT4/QTMenu.hpp \
	UIElements/Views/QT4/QTWorldView.hpp \
	UIElements/Views/QT4/GLMoleculeView.hpp \
	UIElements/Views/QT4/QTMoleculeView.hpp \
	UIElements/Views/QT4/QTStatusBar.hpp
				  
QTUISOURCE = allmocs.moc.cpp \
	UIElements/QT4/QTMainWindow.cpp \
	UIElements/QT4/QTDialog.cpp \
	UIElements/QT4/QTUIFactory.cpp \
	UIElements/Menu/QT4/QTMenu.cpp \
	UIElements/Views/QT4/QTWorldView.cpp \
	UIElements/Views/QT4/GLMoleculeView.cpp \
	UIElements/Views/QT4/QTMoleculeView.cpp \
	UIElements/Views/QT4/QTStatusBar.cpp
             
QTUIHEADER = ${QTUIMOC_HEADER} UIElements/QT4/QTUIFactory.hpp

QTUI_DEFS =

SOURCE = \
  ${ANALYSISSOURCE} \
  ${ACTIONSSOURCE} \
  ${ATOMSOURCE} \
  ${EXCEPTIONSOURCE} \
  ${PATTERNSOURCE} \
  ${PARSERSOURCE} \
  ${SHAPESOURCE} \
  ${DESCRIPTORSOURCE} \
  bond.cpp \
  bondgraph.cpp \
  boundary.cpp \
  Box.cpp \
  CommandLineParser.cpp \
  config.cpp \
  ConfigFileBuffer.cpp \
  element.cpp \
  elements_db.cpp \
  ellipsoid.cpp \
  errorlogger.cpp \
  Formula.cpp \
  graph.cpp \
  helpers.cpp \
  info.cpp \
  leastsquaremin.cpp \
  Line.cpp \
  linkedcell.cpp \
  log.cpp \
  logger.cpp \
  Matrix.cpp \
  moleculelist.cpp \
  molecule.cpp \
  molecule_dynamics.cpp \
  molecule_fragmentation.cpp \
  molecule_geometry.cpp \
  molecule_graph.cpp \
  molecule_pointcloud.cpp \
  parser.cpp \
  periodentafel.cpp \
  Plane.cpp \
  tesselation.cpp \
  tesselationhelpers.cpp \
  ThermoStatContainer.cpp \
  triangleintersectionlist.cpp \
  UIElements/UIFactory.cpp \
  vector_ops.cpp \
  verbose.cpp \
  World.cpp

HEADER = \
  ${ANALYSISHEADER} \
  ${ACTIONSHEADER} \
  ${ATOMHEADER} \
  ${EXCEPTIONHEADER} \
  ${PARSERHEADER} \
  ${PATTERNHEADER} \
  ${SHAPEHEADER} \
  ${DESCRIPTORHEADER} \
  bond.hpp \
  bondgraph.hpp \
  boundary.hpp \
  Box.hpp \
  CommandLineParser.hpp \
  config.hpp \
  ConfigFileBuffer.hpp \
  defs.hpp \
  element.hpp \
  elements_db.hpp \
  ellipsoid.hpp \
  errorlogger.hpp \
  Formula.hpp \
  graph.hpp \
  helpers.hpp \
  info.hpp \
  leastsquaremin.hpp \
  Line.hpp \
  linkedcell.hpp \
  lists.hpp \
  log.hpp \
  logger.hpp \
  Matrix.hpp \
  molecule.hpp \
  molecule_template.hpp \
  parser.hpp \
  periodentafel.hpp \
  Plane.hpp \
  stackclass.hpp \
  tesselation.hpp \
  tesselationhelpers.hpp \
  ThermoStatContainer.hpp \
  triangleintersectionlist.hpp \
  UIElements/UIFactory.hpp \
  verbose.hpp \
  vector_ops.hpp \
  World.hpp 

# the following files are no longer used:
#  memoryallocator.hpp \
#  memoryallocator.cpp \
#  memoryusageobserver.hpp \
#  memoryusageobserver.cpp

BOOST_LIB = $(BOOST_LDFLAGS) $(BOOST_MPL_LIB)
GUI_LIBS = ${QT_LDADD} ${QT_LIB_GUI} -lQtOpenGL ${GLU_LIBS}
INCLUDES = -I$(top_srcdir)/src/unittests -I$(top_srcdir)/src/Actions -I$(top_srcdir)/src/UIElements

noinst_LIBRARIES = libmolecuilderbase.a libmolecuilder.a libgslwrapper.a libmenu.a libparser.a
bin_PROGRAMS = molecuilder molecuildergui joiner analyzer
EXTRA_PROGRAMS = unity

molecuilderdir = ${bindir}

libmolecuilderbase_a_SOURCES = ${BASESOURCE} ${BASEHEADER}
libmolecuilder_a_SOURCES = ${SOURCE} ${HEADER}
libmenu_a_SOURCES = ${UISOURCE} ${UIHEADER} 
libparser_a_SOURCES = ${PARSERSOURCE} ${PARSERHEADER}
libgslwrapper_a_SOURCES = ${LINALGSOURCE} ${LINALGHEADER}

molecuilder_DATA = elements.db valence.db orbitals.db Hbonddistance.db Hbondangle.db

molecuilder_CXXFLAGS = $(BOOST_CPPFLAGS)
#molecuilder_CXXFLAGS += -DNO_CACHING
molecuilder_LDFLAGS = $(BOOST_LIB)
molecuilder_SOURCES = ${LEGACYSOURCE} builder.cpp
molecuilder_SOURCES += $(srcdir)/version.c
molecuilder_LDADD = UIElements/libMolecuilderUI.a Actions/libMolecuilderActions.a libmolecuilderbase.a libmolecuilder.a libparser.a libgslwrapper.a $(BOOST_LIB) ${BOOST_THREAD_LIB} ${BOOST_PROGRAM_OPTIONS_LIB}

#Stuff for building the GUI using QT
molecuildergui_SOURCES = ${QTUISOURCE} ${LEGACYSOURCE} builder.cpp
molecuildergui_SOURCES += $(srcdir)/version.c
molecuildergui_CXXFLAGS = ${QT_CXXFLAGS} ${GLU_CXXFLAGS} -DUSE_GUI_QT
molecuildergui_LDFLAGS = $(BOOST_LIB) ${QT_LDFLAGS} ${GLU_LDFLAGS}
molecuildergui_LDADD = UIElements/libMolecuilderUI.a Actions/libMolecuilderActions.a libmolecuilderbase.a libmolecuilder.a libparser.a libgslwrapper.a $(BOOST_LIB) ${BOOST_THREAD_LIB} ${BOOST_PROGRAM_OPTIONS_LIB}  ${GUI_LIBS}

joiner_SOURCES = joiner.cpp datacreator.cpp parser.cpp datacreator.hpp helpers.hpp parser.hpp periodentafel.hpp
joiner_LDADD = libmolecuilder.a libmolecuilderbase.a $(BOOST_LIB) ${BOOST_THREAD_LIB}

analyzer_SOURCES = analyzer.cpp datacreator.cpp parser.cpp helpers.hpp periodentafel.hpp parser.hpp datacreator.hpp 
analyzer_LDADD = libmolecuilder.a libmolecuilderbase.a $(BOOST_LIB) ${BOOST_THREAD_LIB}

unity_SOURCES = unity.cpp $(srcdir)/version.c
unity_LDADD = $(BOOST_LIB) ${BOOST_THREAD_LIB} ${BOOST_PROGRAM_OPTIONS_LIB}

#Rules needed for QT4
# UI-Files are scattered throughout several subdirectories
# Therfore `%'-rules do not seem to work
#Quick fix to get it done otherwise
allmocs.moc.cpp: ${QTUIMOC_HEADER}
	echo "" > allmocs.moc.cpp;\
	list='$(QTUIMOC_HEADER)'; for header in $$list; do \
	echo "Making mocfile for $$header"; \
	target=`basename $$header | sed "s/\(.*\)\..*/\1.moc.cpp/"`;\
	$(MOC) $(srcdir)/$$header -o $$target \
	|| eval $$failcom; \
	echo "#include \"$$target\"" >> allmocs.moc.cpp; \
	done;

unity.cpp: ${LINALGSOURCE} ${LINALGHEADER} ${SOURCE} ${HEADER}
	echo "" >  unity.cpp; \
	list='$(BASESOURCE)'; for file in $$list; do \
	  echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
	done; \
	list='$(LINALGSOURCE)'; for file in $$list; do \
	  echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
	done; \
	list='$(SOURCE)'; for file in $$list; do \
	  echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
	done; \
	subdirs='$(SUBDIRS)';for directory in $$subdirs; do\
		olddir=$$PWD;\
		cd $$directory && make unity.cpp;\
		cd $$olddir;\
		echo "#include \"$$directory/unity.cpp\"" >> unity.cpp;\
	done;\
	echo "#include \"$(srcdir)/builder.cpp\"" >> unity.cpp;

MOSTLYCLEANFILES = allmocs.moc.cpp unity.cpp 
	
#EXTRA_DIST = ${molecuilder_DATA}

FORCE:
$(srcdir)/.git-version: FORCE
	@if (test -d $(top_srcdir)/.git && cd $(srcdir) \
	     && { git describe --dirty --always || git describe; } ) > .git-version-t 2>/dev/null \
	  && ! diff .git-version-t $(srcdir)/.git-version >/dev/null 2>&1; then \
	  mv -f .git-version-t $(srcdir)/.git-version; \
	else \
	  rm -f .git-version-t; \
	fi

EXTRA_DIST = $(srcdir)/.git-version

$(srcdir)/version.c: $(srcdir)/.git-version
	echo "const char *ESPACKVersion = \"$(PACKAGE_NAME) -- git version: "`cat $(srcdir)/.git-version`"\";" > $@