ATOMSOURCE = atom.cpp atom_atominfo.cpp atom_bondedparticle.cpp atom_bondedparticleinfo.cpp atom_graphnode.cpp atom_graphnodeinfo.cpp atom_particleinfo.cpp atom_trajectoryparticle.cpp atom_trajectoryparticleinfo.cpp
ATOMHEADER = atom.hpp atom_atominfo.hpp atom_bondedparticle.hpp atom_bondedparticleinfo.hpp atom_graphnode.hpp atom_graphnodeinfo.hpp atom_particleinfo.hpp atom_trajectoryparticle.hpp atom_trajectoryparticleinfo.hpp

LINALGSOURCE = gslmatrix.cpp gslvector.cpp linearsystemofequations.cpp
LINALGHEADER = gslmatrix.hpp gslvector.hpp linearsystemofequations.hpp

ANALYSISSOURCE = analysis_bonds.cpp analysis_correlation.cpp
ANALYSISHEADER = analysis_bonds.hpp analysis_correlation.hpp

ACTIONSSOURCE = Actions/Action.cpp Actions/Process.cpp Actions/MethodAction.cpp Actions/ActionSequence.cpp Actions/MakroAction.cpp Actions/ErrorAction.cpp Actions/small_actions.cpp Actions/ManipulateAtomsProcess.cpp Actions/ActionRegistry.cpp 
ACTIONSHEADER = Actions/Action.hpp Actions/Process.hpp Actions/Calculation.hpp Actions/Calculation_impl.hpp Actions/MethodAction.hpp Actions/ActionSequence.hpp Actions/MakroAction.hpp Actions/ErrorAction.hpp Actions/small_actions.hpp Actions/ManipulateAtomsProcess.hpp Actions/ActionRegistry.hpp

PATTERNSOURCE = Patterns/Observer.cpp
PATTERNHEADER = Patterns/Cacheable.hpp \
				Patterns/Observer.hpp \
                Patterns/Singleton.hpp

VIEWSOURCE = Views/View.cpp Views/StringView.cpp Views/MethodStringView.cpp Views/StreamStringView.cpp
VIEWHEADER = Views/View.hpp Views/StringView.hpp Views/MethodStringView.hpp Views/StreamStringView.hpp

MENUSOURCE = Menu/Menu.cpp Menu/TextMenu.cpp Menu/MenuItem.cpp Menu/SubMenuItem.cpp Menu/ActionMenuItem.cpp Menu/SeperatorItem.cpp Menu/DisplayMenuItem.cpp
MENUHEADER = Menu/Menu.hpp Menu/TextMenu.hpp Menu/MenuItem.hpp Menu/SubMenuItem.hpp Menu/ActionMenuItem.hpp Menu/SeperatorItem.hpp Menu/DisplayMenuItem.hpp

UISOURCE = ${ACTIONSSOURCE} ${VIEWSOURCE} ${MENUSOURCE} UIElements/UIFactory.cpp UIElements/TextUIFactory.cpp UIElements/MainWindow.cpp UIElements/TextWindow.cpp UIElements/TextStatusIndicator.cpp UIElements/Dialog.cpp UIElements/TextDialog.cpp
UIHEADER = ${ACTIONSHEADER} ${VIEWHEADER} ${MENUHEADER} UIElements/UIFactory.hpp UIElements/TextUIFactory.hpp UIElements/MainWindow.hpp UIElements/TextWindow.hpp UIElements/TextStatusIndicator.hpp UIElements/Dialog.hpp UIElements/TextDialog.hpp

# all these files are only used for legacy reasons while the transition is in progress
# they are only needed to keep the program usable at any point of the transition and will be 
# deleted once everything is fully refactored
LEGACYSOURCE = Legacy/oldmenu.cpp 
LEGACYHEADER = Legacy/oldmenu.hpp

DESCRIPTORSOURCE = Descriptors/AtomDescriptor.cpp \
				   Descriptors/AtomIdDescriptor.cpp \
				   Descriptors/AtomTypeDescriptor.cpp \
				   Descriptors/MoleculeDescriptor.cpp \
				   Descriptors/MoleculeIdDescriptor.cpp 
				   
				   
DESCRIPTORHEADER = Descriptors/AtomDescriptor.hpp \
				   Descriptors/AtomIdDescriptor.hpp \
				   Descriptors/AtomTypeDescriptor.hpp \
				   Descriptors/MoleculeDescriptor.hpp \
				   Descriptors/MoleculeIdDescriptor.hpp
				   


SOURCE = ${ANALYSISSOURCE} \
		 ${ATOMSOURCE} \
		 ${PATTERNSOURCE} \
		 ${UISOURCE} \
		 ${DESCRIPTORSOURCE} \
		 ${LEGACYSOURCE} \
		 bond.cpp \
		 bondgraph.cpp \
		 boundary.cpp \
		 config.cpp \
		 element.cpp \
		 ellipsoid.cpp \
		 errorlogger.cpp \
		 graph.cpp \
		 helpers.cpp \
		 Helpers/Assert.cpp \
		 info.cpp \
		 leastsquaremin.cpp \
		 linkedcell.cpp \
		 lists.cpp \
		 log.cpp \
		 logger.cpp \
		 memoryusageobserver.cpp \
		 moleculelist.cpp \
		 molecule.cpp \
		 molecule_dynamics.cpp \
		 molecule_fragmentation.cpp \
		 molecule_geometry.cpp \
		 molecule_graph.cpp \
		 molecule_pointcloud.cpp \
		 parser.cpp \
		 periodentafel.cpp \
		 tesselation.cpp \
		 tesselationhelpers.cpp \
		 vector.cpp \
		 verbose.cpp \
		 World.cpp
HEADER = ${ANALYSISHEADER} ${ATOMHEADER} ${PATTERNHEADER} ${UIHEADER} ${DESCRIPTORHEADER} ${LEGACYHEADER} bond.hpp bondgraph.hpp boundary.hpp config.hpp defs.hpp element.hpp ellipsoid.hpp errorlogger.hpp graph.hpp helpers.hpp info.hpp leastsquaremin.hpp linkedcell.hpp lists.hpp log.hpp logger.hpp memoryallocator.hpp memoryusageobserver.hpp molecule.hpp molecule_template.hpp parser.hpp periodentafel.hpp stackclass.hpp tesselation.hpp tesselationhelpers.hpp vector.hpp verbose.hpp World.hpp 

BOOST_LIB = $(BOOST_LDFLAGS) $(BOOST_MPL_LIB)
INCLUDES = -I$(top_srcdir)/src/unittests

noinst_LIBRARIES = libmolecuilder.a libgslwrapper.a
bin_PROGRAMS = molecuilder joiner analyzer
molecuilderdir = ${bindir}
libmolecuilder_a_SOURCES = ${SOURCE} ${HEADER}
libgslwrapper_a_SOURCES = ${LINALGSOURCE} ${LINALGHEADER}
molecuilder_DATA = elements.db valence.db orbitals.db Hbonddistance.db Hbondangle.db
molecuilder_LDFLAGS = $(BOOST_LDFLAGS)
molecuilder_SOURCES = builder.cpp
molecuilder_LDADD = libmolecuilder.a libgslwrapper.a $(BOOST_LIB) ${BOOST_THREAD_LIB}
joiner_SOURCES = joiner.cpp datacreator.cpp parser.cpp datacreator.hpp helpers.hpp parser.hpp periodentafel.hpp
joiner_LDADD = libmolecuilder.a $(BOOST_LIB) ${BOOST_THREAD_LIB}
analyzer_SOURCES = analyzer.cpp datacreator.cpp parser.cpp helpers.hpp periodentafel.hpp parser.hpp datacreator.hpp 
analyzer_LDADD = libmolecuilder.a $(BOOST_LIB) ${BOOST_THREAD_LIB}

#EXTRA_DIST = ${molecuilder_DATA}

FORCE:
$(srcdir)/.git-version: FORCE
	@if (test -d $(top_srcdir)/../.git && cd $(srcdir) && git describe HEAD) > .git-version-t 2>/dev/null \
	  && ! diff .git-version-t $(srcdir)/.git-version >/dev/null 2>&1; then \
	  mv -f .git-version-t $(srcdir)/.git-version; \
	else \
	  rm -f .git-version-t; \
	fi

EXTRA_DIST = $(srcdir)/.git-version

$(srcdir)/version.c: $(srcdir)/.git-version
	echo "const char *ESPACKVersion = \"$(PACKAGE_NAME) -- git version: "`cat $(srcdir)/.git-version`"\";" > $@

molecuilder_SOURCES += $(srcdir)/version.c