### 2. (un)select all atoms inside cuboid

AT_SETUP([Selection - All atoms inside cuboid])
AT_KEYWORDS([selection,cuboid])
file=allatomsoutsidecuboid.xyz
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/pre/box.xyz $file], 0)
AT_CHECK([../../molecuilder -i $file -v 5 --select-atoms-inside-cuboid "10,10,10" --position "0,0,0" --angle-x 0 --angle-y 0 --angle-z 0 -r], 0, [stdout], [stderr])
AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/post/$file], 0, [ignore], [ignore])
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/pre/box.xyz $file], 0)
AT_CHECK([../../molecuilder -i $file -v 5 --select-atoms-inside-cuboid "10,10,10" --position "0,0,0" --angle-x 0 --angle-y 0 --angle-z 0  --undo -r], 0, [stdout], [stderr])
AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/pre/box.xyz], 0, [ignore], [ignore])
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/pre/box.xyz $file], 0)
AT_CHECK([../../molecuilder -i $file -v 5 --select-atoms-inside-cuboid "10,10,10" --position "0,0,0" --angle-x 0 --angle-y 0 --angle-z 0  --undo --redo -r], 0, [stdout], [stderr])
AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/post/$file], 0, [ignore], [ignore])
# check size of cuboid
AT_SKIP_IF([! awk '' < /dev/null])  # check whether awk is there
AT_SKIP_IF([! cat >/dev/null < /dev/null])  # check whether cat is there
AT_SKIP_IF([! wc -l /dev/null])  # check whether wc is there
AT_CHECK([cat < $file | awk -F" " '{ if (($2 > 10) || ($3 > 10) || ($4 > 10)) print $1,$2,$3,$4;}' | wc -l], 0, [stdout], [ignore])
AT_CHECK([fgrep "838" stdout], 0, [ignore], [ignore])
AT_CHECK([cat < $file | awk -F" " '{ if (($2 < 10) && ($3 < 10) && ($4 < 10)) print $1,$2,$3,$4;}' | wc -l], 0, [stdout], [ignore])
AT_CHECK([fgrep "1" stdout], 0, [ignore], [ignore])
AT_CLEANUP

AT_SETUP([Unselection - All atoms inside cuboid])
AT_KEYWORDS([selection,cuboid])
file=allatomsinsidecuboid.xyz
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/pre/box.xyz $file], 0)
AT_CHECK([../../molecuilder -i $file -v 5 --select-all-atoms --unselect-atoms-inside-cuboid "10,10,10" --position "0,0,0" --angle-x 0 --angle-y 0 --angle-z 0 -r], 0, [stdout], [stderr])
AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/post/$file], 0, [ignore], [ignore])
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/pre/box.xyz $file], 0)
AT_CHECK([../../molecuilder -i $file -v 5 --select-all-atoms --unselect-atoms-inside-cuboid "10,10,10" --position "0,0,0" --angle-x 0 --angle-y 0 --angle-z 0  --undo -r], 0, [stdout], [stderr])
AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/post/empty.xyz], 0, [ignore], [ignore])
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/pre/box.xyz $file], 0)
AT_CHECK([../../molecuilder -i $file -v 5 --select-all-atoms --unselect-atoms-inside-cuboid "10,10,10" --position "0,0,0" --angle-x 0 --angle-y 0 --angle-z 0  --undo --redo -r], 0, [stdout], [stderr])
AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/2/post/$file], 0, [ignore], [ignore])
# check size of cuboid
AT_SKIP_IF([! awk '' < /dev/null])  # check whether awk is there
AT_SKIP_IF([! cat >/dev/null < /dev/null])  # check whether cat is there
AT_SKIP_IF([! wc -l /dev/null])  # check whether wc is there
AT_CHECK([cat < $file | awk -F" " '{ if (($2 < 10) || ($3 < 10) || ($4 < 10)) print $1,$2,$3,$4;}' | wc -l], 0, [stdout], [ignore])
AT_CHECK([fgrep "193" stdout], 0, [ignore], [ignore])
AT_CHECK([cat < $file | awk -F" " '{ if (($2 > 10) && ($3 > 10) && ($4 > 10)) print $1,$2,$3,$4;}' | wc -l], 0, [stdout], [ignore])
AT_CHECK([fgrep "1" stdout], 0, [ignore], [ignore])
AT_CLEANUP