AT_BANNER([MoleCuilder - standard options])
# 1. verbosity
AT_SETUP([Standard Options - verbosity])
AT_KEYWORDS([options])
AT_CHECK([pwd],[ignore],[ignore])
AT_CHECK([../../molecuilder -v 1], 0, [stdout], [ignore])
AT_CHECK([fgrep olecuilder stdout], 0, [ignore], [ignore])
AT_CLEANUP

# 2. help screen
AT_SETUP([Standard Options - help screen])
AT_KEYWORDS([options])
AT_CHECK([../../molecuilder -h], 0, [stdout], [ignore])
AT_CHECK([fgrep "Give this help screen" stdout], 0, [ignore], [ignore])
AT_CLEANUP

# 3. no element database
AT_SETUP([Standard Options - no element database])
AT_KEYWORDS([options])
AT_CHECK([../../molecuilder -e], 134, [ignore], [stderr])
AT_CLEANUP

# 4. element database
AT_SETUP([Standard Options - element database])
AT_KEYWORDS([options])
AT_DATA([elements.db], [[#	Covalent	radius	of	each	element	in	Angstroem	from	CSD	(binding	is:	[Rcov(A)+Rcov(B)-t,Rcov(A)+Rcov(B)+t]	with	t	=	0.4A
#Element	Name	Symbol	Period	Group	Block	Atomic	Number	AtomicWeight	Covalent	Radius	vdW	Radius
Hydrogen	H	1	1	s	1	1.008	0.23	1.09
Helium	He	1	18	p	2	4.003	1.5	1.4
]])
AT_CHECK([../../molecuilder test.conf -e ./], 0, [stdout], [stderr])
AT_CHECK([grep -E "Using.*as elements database." stdout], 0, [ignore], [ignore])
AT_CHECK([fgrep "Element list loaded successfully." stdout], 0, [ignore], [ignore])
AT_CHECK([fgrep "Something went wrong while parsing the other databases!" stderr], 0, [ignore], [ignore])
AT_CLEANUP

# 5. bond length database
AT_SETUP([Standard Options - bond length table])
AT_KEYWORDS([options])
AT_DATA([bondlength.db], [[# bond length database
	1	2
1	1.	0.
2	0.	0.
]])
AT_CHECK([../../molecuilder test.conf -g bondlength.db], 0, [stdout], [stderr])
AT_CHECK([grep -E "Using.*as bond length table." stdout], 0, [ignore], [ignore])
AT_CLEANUP

# 6. fast trajectories
AT_SETUP([Standard Options - fast trajectories])
AT_KEYWORDS([options])
AT_CHECK([../../molecuilder test.conf -n 1], 0, [stdout], [stderr])
AT_CHECK([fgrep "I won't parse trajectories" stdout], 0, [ignore], [ignore])
AT_CLEANUP

# 7. molecule default name
AT_SETUP([Standard Options - molecule default name])
AT_KEYWORDS([options])
AT_CHECK([../../molecuilder test.conf -X test], 0, [stdout], [stderr])
AT_CHECK([fgrep "Default name of new molecules set to test." stdout], 0, [ignore], [ignore])
AT_CLEANUP