Changeset c8b17b

Timestamp:

Oct 12, 2011, 2:10:56 PM (13 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

c5038e

Parents:

220cf64

git-author:

Frederik Heber <heber@…> (10/11/11 14:45:18)

git-committer:

Frederik Heber <heber@…> (10/12/11 14:10:56)

Message:

DISTCHECKFIX: Added missing chmod u+w were appropriate.

• This is necessary as files are copied as read-only which prevents molecuilder from writing changes to file.

Location:

tests/regression

Files:

• Domain/RepeatBox/testsuite-domain-repeat-box.at (modified) (12 diffs)
• Filling/FillWithMolecule/testsuite-fill-with-molecule.at (modified) (2 diffs)
• Fragmentation/FragmentMolecule-MaxOrder/testsuite-fragmentation-fragment-molecule-maxorder.at (modified) (1 diff)
• Fragmentation/FragmentMolecule/testsuite-fragmentation-fragment-molecule.at (modified) (1 diff)
• Graph/DepthFirstSearch/testsuite-graph-depth-first-search.at (modified) (1 diff)
• Graph/SubgraphDissection/testsuite-graph-subgraph-dissection.at (modified) (3 diffs)
• Parser/Tremolo-SetAtomdata/testsuite-parser-tremolo-setatomdata.at (modified) (1 diff)

tests/regression/Domain/RepeatBox/testsuite-domain-repeat-box.at

@@ -6 +6 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 1, 1"], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -14 +15 @@
 file=test-x.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file -o xyz -d "2, 1, 1"], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -22 +24 @@
 file=test-y.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 2, 1"], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -30 +33 @@
 file=test-z.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 1, 2"], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -45 +49 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 1, 1" --undo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -53 +58 @@
 file=test-x.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file -o xyz -d "2, 1, 1" --undo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -61 +67 @@
 file=test-y.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 2, 1" --undo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -69 +76 @@
 file=test-z.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 1, 2" --undo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -84 +92 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 1, 1" --undo --redo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -92 +101 @@
 file=test-x.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file -o xyz -d "2, 1, 1" --undo --redo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -100 +110 @@
 file=test-y.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 2, 1" --undo --redo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])
@@ -108 +119 @@
 file=test-z.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Domain/RepeatBox/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -o xyz -d "1, 1, 2" --undo --redo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "Box domain is now" stdout], 0, [ignore], [ignore])

tests/regression/Filling/FillWithMolecule/testsuite-fill-with-molecule.at

@@ -24 +24 @@
 file=empty.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillWithMolecule/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_DATA([water.xyz], [[3
  # test configuration, created by molecuilder test suite
@@ -42 +43 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillWithMolecule/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_DATA([water.xyz], [[3
  # test configuration, created by molecuilder test suite

tests/regression/Fragmentation/FragmentMolecule-MaxOrder/testsuite-fragmentation-fragment-molecule-maxorder.at

@@ -7 +7 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Fragmentation/FragmentMolecule-MaxOrder/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -v 1 --select-molecule-by-id 0 -f ./BondFragment --distance 1.55 --order 2], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -v 1 --select-molecule-by-id 0 -f ./BondFragment --distance 1.55 --order 2], 2, [ignore], [ignore])

tests/regression/Fragmentation/FragmentMolecule/testsuite-fragmentation-fragment-molecule.at

@@ -6 +6 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Fragmentation/FragmentMolecule/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -v 1 -I --select-molecule-by-id 0 -f ./BondFragment --distance 1.55 --order 2], 0, [ignore], [ignore])
 #AT_CHECK([diff BondFragment0.conf ${abs_top_srcdir}/tests/regression/Fragmentation/FragmentMolecule/post/BondFragment0.conf], 0, [ignore], [ignore])

tests/regression/Graph/DepthFirstSearch/testsuite-graph-depth-first-search.at

@@ -6 +6 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/DepthFirstSearch/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file -v 3 --select-all-atoms --create-adjacency -D 2.], 0, [stdout], [stderr])
 AT_CHECK([fgrep -c "No rings were detected in the molecular structure." stdout], 0, [1

tests/regression/Graph/SubgraphDissection/testsuite-graph-subgraph-dissection.at

@@ -6 +6 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -v 3 -I], 0, [stdout], [stderr])
 AT_CHECK([fgrep "I scanned 31 molecules." stdout], 0, [ignore], [ignore])
@@ -17 +18 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -v 3 -I --undo], 0, [stdout], [stderr])
 AT_CHECK([fgrep "I scanned 31 molecules." stdout], 0, [ignore], [ignore])
@@ -28 +30 @@
 file=test.conf
 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection/pre/test.conf $file], 0)
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i $file  -v 3 -I --undo --redo], 0, [stdout], [stderr])
 AT_CHECK([grep -c "I scanned 31 molecules." stdout], 0, [2

tests/regression/Parser/Tremolo-SetAtomdata/testsuite-parser-tremolo-setatomdata.at

@@ -6 +6 @@
 file=argon.data
 AT_CHECK([/bin/cp ${abs_top_srcdir}/tests/regression/Parser/Tremolo-SetAtomdata/pre/argon.data $file], 0, [ignore], [ignore])
+AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
 AT_CHECK([../../molecuilder -i argon.data --set-tremolo-atomdata "type x=3"], 0, [stdout], [ignore])
 AT_CHECK([file=argon.data; diff -I '%.*' $file ${abs_top_srcdir}/tests/regression/Parser/Tremolo-SetAtomdata/post/argon.data], 0, [ignore], [ignore])