SaturatedFragment needs to shift all atoms such that the bonds are connected
in the sense of open boundary conditions prior to creating the config for
MPQC. For this we need to shift the original atom forth and back.
MPQC when sampling the charge distribution needs to check not only the
current position but also all 26 "mirror image" positions in case of periodic
boundary conditions.
PartialNucleiChargeFitter needs to adapted as the positions of the nuclei
may not be at the place where it is in the charge distribution.
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