Changeset aafd77
- Timestamp:
- Jul 2, 2010, 2:58:40 PM (14 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- fee079
- Parents:
- 962d8d
- git-author:
- Tillmann Crueger <crueger@…> (07/02/10 14:55:52)
- git-committer:
- Tillmann Crueger <crueger@…> (07/02/10 14:58:40)
- Location:
- src
- Files:
-
- 7 edited
Legend:
- Unmodified
- Added
- Removed
-
src/atom_trajectoryparticle.hpp
r962d8d raafd77 20 20 #include <fstream> 21 21 22 #include <gsl/gsl_inline.h> 22 23 #include <gsl/gsl_randist.h> 23 24 -
src/molecule.cpp
r962d8d raafd77 5 5 */ 6 6 7 #ifdef HAVE_CONFIG_H 8 #include <config.h> 9 #endif 10 7 11 #include "Helpers/MemDebug.hpp" 8 12 … … 10 14 #include <boost/bind.hpp> 11 15 #include <boost/foreach.hpp> 16 17 #include <gsl/gsl_inline.h> 18 #include <gsl/gsl_heapsort.h> 12 19 13 20 #include "World.hpp" -
src/molecule.hpp
r962d8d raafd77 9 9 /*********************************************** includes ***********************************/ 10 10 11 // include config.h12 11 #ifdef HAVE_CONFIG_H 13 12 #include <config.h> 14 13 #endif 15 16 // GSL headers17 #include <gsl/gsl_eigen.h>18 #include <gsl/gsl_heapsort.h>19 #include <gsl/gsl_linalg.h>20 #include <gsl/gsl_matrix.h>21 #include <gsl/gsl_multimin.h>22 #include <gsl/gsl_vector.h>23 #include <gsl/gsl_randist.h>24 14 25 15 //// STL headers -
src/molecule_dynamics.cpp
r962d8d raafd77 19 19 #include "Plane.hpp" 20 20 #include "ThermoStatContainer.hpp" 21 22 #include <gsl/gsl_matrix.h> 23 #include <gsl/gsl_vector.h> 24 #include <gsl/gsl_linalg.h> 21 25 22 26 /************************************* Functions for class molecule *********************************/ -
src/molecule_geometry.cpp
r962d8d raafd77 5 5 * Author: heber 6 6 */ 7 8 #ifdef HAVE_CONFIG_H 9 #include <config.h> 10 #endif 7 11 8 12 #include "Helpers/MemDebug.hpp" … … 22 26 #include "Box.hpp" 23 27 #include <boost/foreach.hpp> 28 29 #include <gsl/gsl_eigen.h> 30 #include <gsl/gsl_multimin.h> 24 31 25 32 -
src/molecule_graph.cpp
r962d8d raafd77 5 5 * Author: heber 6 6 */ 7 8 #ifdef HAVE_CONFIG_H 9 #include <config.h> 10 #endif 7 11 8 12 #include "Helpers/MemDebug.hpp" -
src/moleculelist.cpp
r962d8d raafd77 5 5 */ 6 6 7 #ifdef HAVE_CONFIG_H 8 #include <config.h> 9 #endif 10 7 11 #include "Helpers/MemDebug.hpp" 8 12 9 13 #include <cstring> 14 15 #include <gsl/gsl_inline.h> 16 #include <gsl/gsl_heapsort.h> 10 17 11 18 #include "World.hpp"
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