Changeset 7326b2

Timestamp:

Nov 4, 2009, 6:25:42 PM (15 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

e138de

Parents:

7ea9e6 (diff), 06c7a3 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.

Message:

Merge branch 'CodeRefactoring' of ​ssh://adamantium/home/metzler/workspace/espack into Analysis_PairCorrelation

Conflicts:

molecuilder/src/unittests/Makefile.am

• molecuilder/src/Makefile.am: included log.cpp, logger.cpp and errorlogger.cpp un libmolecuilder
• molecuilder/src/unittests/Makefile.am: included LogUnitTest in tests and removed CXXFLAGS and LDFLAGS from it

Location:

src

Files:

• Makefile.am (modified) (1 diff)
• errorLogger.cpp (added)
• errorLogger.hpp (added)
• log.cpp (added)
• log.hpp (added)
• logger.cpp (added)
• logger.hpp (added)
• unittests/Makefile.am (modified) (3 diffs)
• unittests/logunittest.cpp (added)
• unittests/logunittest.hpp (added)
• verbose.cpp (modified) (2 diffs)
• verbose.hpp (modified) (1 diff)

src/Makefile.am

@@ -2 +2 @@
 ATOMHEADER = atom.hpp atom_atominfo.hpp atom_bondedparticle.hpp atom_bondedparticleinfo.hpp atom_graphnode.hpp atom_graphnodeinfo.hpp atom_particleinfo.hpp atom_trajectoryparticle.hpp atom_trajectoryparticleinfo.hpp
 
-SOURCE = analysis_correlation.cpp ${ATOMSOURCE} bond.cpp bondgraph.cpp boundary.cpp config.cpp element.cpp ellipsoid.cpp graph.cpp helpers.cpp leastsquaremin.cpp linkedcell.cpp memoryusageobserver.cpp moleculelist.cpp molecule.cpp molecule_dynamics.cpp molecule_fragmentation.cpp molecule_geometry.cpp molecule_graph.cpp molecule_pointcloud.cpp parser.cpp periodentafel.cpp tesselation.cpp tesselationhelpers.cpp vector.cpp verbose.cpp
-HEADER = analysis_correlation.hpp ${ATOMHEADER} bond.hpp bondgraph.hpp boundary.hpp config.hpp defs.hpp element.hpp ellipsoid.hpp graph.hpp helpers.hpp leastsquaremin.hpp linkedcell.hpp lists.hpp memoryallocator.hpp memoryusageobserver.hpp molecule.hpp molecule_template.hpp parser.hpp periodentafel.hpp stackclass.hpp tesselation.hpp tesselationhelpers.hpp vector.hpp verbose.hpp
+SOURCE = analysis_correlation.cpp ${ATOMSOURCE} bond.cpp bondgraph.cpp boundary.cpp config.cpp element.cpp ellipsoid.cpp errorLogger.cpp graph.cpp helpers.cpp leastsquaremin.cpp linkedcell.cpp log.cpp logger.cpp memoryusageobserver.cpp moleculelist.cpp molecule.cpp molecule_dynamics.cpp molecule_fragmentation.cpp molecule_geometry.cpp molecule_graph.cpp molecule_pointcloud.cpp parser.cpp periodentafel.cpp tesselation.cpp tesselationhelpers.cpp vector.cpp verbose.cpp
+HEADER = analysis_correlation.hpp ${ATOMHEADER} bond.hpp bondgraph.hpp boundary.hpp config.hpp defs.hpp element.hpp ellipsoid.hpp errorLogger.hpp graph.hpp helpers.hpp leastsquaremin.hpp linkedcell.hpp lists.hpp log.hpp logger.hpp memoryallocator.hpp memoryusageobserver.hpp molecule.hpp molecule_template.hpp parser.hpp periodentafel.hpp stackclass.hpp tesselation.hpp tesselationhelpers.hpp vector.hpp verbose.hpp
 
 BOOST_LIB = $(BOOST_LDFLAGS) $(BOOST_MPL_LIB)

src/unittests/Makefile.am

@@ -4 +4 @@
 AM_CXXFLAGS = $(CPPUNIT_CFLAGS)
 
-TESTS = ActOnAllUnitTest AnalysisCorrelationToPointUnitTest AnalysisCorrelationToSurfaceUnitTest AnalysisPairCorrelationUnitTest BondGraphUnitTest ListOfBondsUnitTest MemoryUsageObserverUnitTest MemoryAllocatorUnitTest StackClassUnitTest VectorUnitTest
+TESTS = ActOnAllUnitTest AnalysisCorrelationToPointUnitTest AnalysisCorrelationToSurfaceUnitTest AnalysisPairCorrelationUnitTest BondGraphUnitTest ListOfBondsUnitTest LogUnitTest MemoryUsageObserverUnitTest MemoryAllocatorUnitTest StackClassUnitTest VectorUnitTest
 check_PROGRAMS = $(TESTS)
 noinst_PROGRAMS = $(TESTS)
@@ -25 +25 @@
 ListOfBondsUnitTest_LDADD = ../libmolecuilder.a
 
-MemoryAllocatorUnitTest_SOURCES = defs.hpp ../helpers.cpp ../helpers.hpp memoryallocatorunittest.cpp memoryallocatorunittest.hpp memoryallocator.hpp memoryusageobserver.hpp verbose.hpp 
+LogUnitTest_SOURCES = logunittest.cpp logunittest.hpp 
+LogUnitTest_LDADD = ../libmolecuilder.a
+
+MemoryAllocatorUnitTest_SOURCES = defs.hpp ../helpers.cpp ../helpers.hpp memoryallocatorunittest.cpp memoryallocatorunittest.hpp memoryallocator.hpp ../memoryusageobserver.cpp memoryusageobserver.hpp ../verbose.cpp verbose.hpp 
 
 MemoryUsageObserverUnitTest_SOURCES = defs.hpp helpers.hpp memoryusageobserverunittest.cpp memoryusageobserverunittest.hpp memoryusageobserver.hpp verbose.hpp 
@@ -31 +34 @@
 StackClassUnitTest_SOURCES = memoryallocator.hpp stackclass.hpp stackclassunittest.cpp stackclassunittest.hpp
 
-VectorUnitTest_SOURCES = defs.hpp ../helpers.cpp helpers.hpp ../leastsquaremin.cpp leastsquaremin.hpp memoryallocator.hpp memoryusageobserver.hpp vectorunittest.cpp vectorunittest.hpp vector.hpp ../vector.cpp verbose.hpp ../verbose.cpp 
+VectorUnitTest_SOURCES = defs.hpp ../helpers.cpp helpers.hpp ../leastsquaremin.cpp leastsquaremin.hpp memoryallocator.hpp memoryusageobserver.hpp ../memoryusageobserver.cpp vectorunittest.cpp vectorunittest.hpp vector.hpp ../vector.cpp verbose.hpp ../verbose.cpp 
 
 
 #AUTOMAKE_OPTIONS = parallel-tests
+

src/verbose.cpp

@@ -15 +15 @@
 };
 
+/** States whether current output message should be print or not.
+ * Compares Verbose::Verbosity against \a verbosityLevel.
+ * \param verbosityLevel given global level of verbosity
+ * \return true - do output, false - don't
+ */
+bool Verbose::DoOutput(int verbosityLevel) const
+{
+  return (verbosityLevel >= Verbosity);
+};
+
+
 /** Operator for the Verbose(arg) call.
  * Constructs temporary a Verbose class object, wherein the verbosity is stored.
@@ -26 +37 @@
   return m.print(ost);
 };
-
 
 /** Prints the tabs according to verbosity stored in the temporary constructed class.

src/verbose.hpp

@@ -30 +30 @@
 
     ostream& print (ostream &ost) const;
+    bool DoOutput(int verbosityLevel) const;
   private:
     int Verbosity;