- Timestamp:
- Jun 26, 2010, 11:59:50 AM (15 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- cadbc1
- Parents:
- d10eb6
- Location:
- src
- Files:
-
- 2 edited
Legend:
- Unmodified
- Added
- Removed
-
src/vector.cpp
rd10eb6 r63d2b8 174 174 }; 175 175 176 /** Keeps the vector in a periodic cell, defined by the symmetric \a *matrix.177 * \param *out ofstream for debugging messages178 * Tries to translate a vector into each adjacent neighbouring cell.179 */180 void Vector::KeepPeriodic(const double * const _matrix)181 {182 Matrix matrix = Matrix(_matrix);183 // int N[NDIM];184 // bool flag = false;185 //vector Shifted, TranslationVector;186 // Log() << Verbose(1) << "Begin of KeepPeriodic." << endl;187 // Log() << Verbose(2) << "Vector is: ";188 // Output(out);189 // Log() << Verbose(0) << endl;190 MatrixMultiplication(matrix.invert());191 for(int i=NDIM;i--;) { // correct periodically192 if (at(i) < 0) { // get every coefficient into the interval [0,1)193 at(i) += ceil(at(i));194 } else {195 at(i) -= floor(at(i));196 }197 }198 MatrixMultiplication(matrix);199 // Log() << Verbose(2) << "New corrected vector is: ";200 // Output(out);201 // Log() << Verbose(0) << endl;202 // Log() << Verbose(1) << "End of KeepPeriodic." << endl;203 };204 205 176 /** Calculates scalar product between this and another vector. 206 177 * \param *y array to second vector -
src/vector.hpp
rd10eb6 r63d2b8 61 61 void Scale(const double factor); 62 62 void MatrixMultiplication(const Matrix &M); 63 void KeepPeriodic(const double * const matrix);64 63 bool GetOneNormalVector(const Vector &x1); 65 64 bool MakeNormalTo(const Vector &y1);
Note:
See TracChangeset
for help on using the changeset viewer.