Changeset 61775a for src/Helpers
- Timestamp:
- Mar 11, 2011, 12:38:34 PM (14 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 37b2f91
- Parents:
- 13a953
- git-author:
- Frederik Heber <heber@…> (03/03/11 01:29:55)
- git-committer:
- Frederik Heber <heber@…> (03/11/11 12:38:34)
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/Helpers/helpers.hpp
r13a953 r61775a 57 57 58 58 59 /** Creates a lookup table for true father's Atom::Nr -> atom ptr.60 * \param *start begin of chain list61 * \paran *end end of chain list62 * \param **Lookuptable pointer to return allocated lookup table (should be NULL on start)63 * \param count optional predetermined size for table (otherwise we set the count to highest true father id)64 * \return true - success, false - failure65 */66 template <typename T> bool CreateFatherLookupTable(T *start, T *end, T **&LookupTable, int count = 0)67 {68 bool status = true;69 T *Walker = NULL;70 int AtomNo;71 72 if (LookupTable != NULL) {73 DoeLog(0) && (eLog() << Verbose(0) << "Pointer for Lookup table is not NULL! Aborting ..." <<endl);74 return false;75 }76 77 // count them78 if (count == 0) {79 Walker = start;80 while (Walker->next != end) { // create a lookup table (Atom::Nr -> atom) used as a marker table lateron81 Walker = Walker->next;82 count = (count < Walker->GetTrueFather()->nr) ? Walker->GetTrueFather()->nr : count;83 }84 }85 if (count <= 0) {86 DoeLog(1) && (eLog() << Verbose(1) << "Count of lookup list is 0 or less." << endl);87 return false;88 }89 90 // allocate and fill91 LookupTable = new T*[count];92 if (LookupTable == NULL) {93 DoeLog(0) && (eLog()<< Verbose(0) << "LookupTable memory allocation failed!" << endl);94 performCriticalExit();95 status = false;96 } else {97 Walker = start;98 while (Walker->next != end) { // create a lookup table (Atom::Nr -> atom) used as a marker table lateron99 Walker = Walker->next;100 AtomNo = Walker->GetTrueFather()->nr;101 if ((AtomNo >= 0) && (AtomNo < count)) {102 //*out << "Setting LookupTable[" << AtomNo << "] to " << *Walker << endl;103 LookupTable[AtomNo] = Walker;104 } else {105 DoeLog(2) && (eLog() << Verbose(2) << "Walker " << *Walker << " exceeded range of nuclear ids [0, " << count << ")." << endl);106 status = false;107 break;108 }109 }110 }111 112 return status;113 };114 115 116 59 #define PLURAL_S(v) (((v)==1)?"":"s") 117 60
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