Changeset 49e1ae

Timestamp:

Jan 10, 2010, 7:05:34 PM (15 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

3e50ff

Parents:

f60610

Message:

cstring header was missing in files, supplying definition of strlen, strcpy, and so on.

This was noted on laptop with gcc 4.1 (on workstation we have gcc 4.2)

Location:

src

Files:

• analyzer.cpp (modified) (1 diff)
• builder.cpp (modified) (2 diffs)
• config.cpp (modified) (3 diffs)
• joiner.cpp (modified) (1 diff)
• molecule.cpp (modified) (2 diffs)
• molecule_fragmentation.cpp (modified) (1 diff)
• moleculelist.cpp (modified) (1 diff)
• parser.cpp (modified) (1 diff)
• periodentafel.cpp (modified) (1 diff)
• unittests/AnalysisCorrelationToPointUnitTest.cpp (modified) (1 diff)
• unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified) (1 diff)
• unittests/AnalysisPairCorrelationUnitTest.cpp (modified) (1 diff)
• unittests/analysisbondsunittest.cpp (modified) (1 diff)
• unittests/bondgraphunittest.cpp (modified) (1 diff)
• unittests/listofbondsunittest.cpp (modified) (1 diff)
• unittests/tesselation_insideoutsideunittest.cpp (modified) (1 diff)
• unittests/tesselationunittest.cpp (modified) (1 diff)

src/analyzer.cpp

@@ -7 +7 @@
 
 //============================ INCLUDES ===========================
+
+#include <cstring>
 
 #include "datacreator.hpp"

src/builder.cpp

@@ -49 +49 @@
 
 using namespace std;
+
+#include <cstring>
 
 #include "analysis_correlation.hpp"
@@ -1744 +1746 @@
                 molecule *filler = new molecule(periode);;
                 molecule *Filling = NULL;
-                atom *second = NULL, *third = NULL;
+//                atom *second = NULL, *third = NULL;
                 first = new atom();
                 first->type = periode->FindElement(5);

src/config.cpp

@@ -6 +6 @@
 
 #include <stdio.h>
+#include <cstring>
 
 #include "atom.hpp"
@@ -27 +28 @@
     char number1[8];
     char number2[8];
-    char *dummy1, *dummy2;
+    const char *dummy1, *dummy2;
     //Log() << Verbose(0) << s1 << "  " << s2 << endl;
     dummy1 = strchr(s1, '_')+sizeof(char)*5;  // go just after "Ion_Type"
@@ -2123 +2124 @@
               }
               line++;
-            } while (dummy1 != NULL && (dummy1[0] == '#') || (dummy1[0] == '\n'));
+            } while ((dummy1 != NULL) && ((dummy1[0] == '#') || (dummy1[0] == '\n')));
             dummy = dummy1;
           } else { // simple int, strings or doubles start in the same line

src/joiner.cpp

@@ -7 +7 @@
 
 //============================ INCLUDES ===========================
+
+#include <cstring>
 
 #include "datacreator.hpp"

src/molecule.cpp

@@ -4 +4 @@
  *
  */
+
+#include <cstring>
 
 #include "atom.hpp"
@@ -587 +589 @@
   else
     molname = filename; // contains no slashes
-  char *endname = strchr(molname, '.');
+  const char *endname = strchr(molname, '.');
   if ((endname == NULL) || (endname < molname))
     length = strlen(molname);

src/molecule_fragmentation.cpp

@@ -5 +5 @@
  *      Author: heber
  */
+
+#include <cstring>
 
 #include "atom.hpp"

src/moleculelist.cpp

@@ -4 +4 @@
  *
  */
+
+#include <cstring>
 
 #include "atom.hpp"

src/parser.cpp

@@ -6 +6 @@
 
 // ======================================= INCLUDES ==========================================
+
+#include <cstring>
 
 #include "helpers.hpp"

src/periodentafel.cpp

@@ -9 +9 @@
 #include <iomanip>
 #include <fstream>
+#include <cstring>
 
 #include "element.hpp"

src/unittests/AnalysisCorrelationToPointUnitTest.cpp

@@ -11 +11 @@
 #include <cppunit/extensions/TestFactoryRegistry.h>
 #include <cppunit/ui/text/TestRunner.h>
+
+#include <cstring>
 
 #include "analysis_correlation.hpp"

src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp

@@ -11 +11 @@
 #include <cppunit/extensions/TestFactoryRegistry.h>
 #include <cppunit/ui/text/TestRunner.h>
+
+#include <cstring>
 
 #include "analysis_correlation.hpp"

src/unittests/AnalysisPairCorrelationUnitTest.cpp

@@ -11 +11 @@
 #include <cppunit/extensions/TestFactoryRegistry.h>
 #include <cppunit/ui/text/TestRunner.h>
+
+#include <cstring>
 
 #include "analysis_correlation.hpp"

src/unittests/analysisbondsunittest.cpp

@@ -14 +14 @@
 #include <iostream>
 #include <stdio.h>
+#include <cstring>
 
 #include "analysis_bonds.hpp"

src/unittests/bondgraphunittest.cpp

@@ -14 +14 @@
 #include <iostream>
 #include <stdio.h>
+#include <cstring>
 
 #include "atom.hpp"

src/unittests/listofbondsunittest.cpp

@@ -11 +11 @@
 #include <cppunit/extensions/TestFactoryRegistry.h>
 #include <cppunit/ui/text/TestRunner.h>
+
+#include <cstring>
 
 #include "listofbondsunittest.hpp"

src/unittests/tesselation_insideoutsideunittest.cpp

@@ -11 +11 @@
 #include <cppunit/extensions/TestFactoryRegistry.h>
 #include <cppunit/ui/text/TestRunner.h>
+
+#include <cstring>
 
 #include "defs.hpp"

src/unittests/tesselationunittest.cpp

@@ -12 +12 @@
 #include <cppunit/extensions/TestFactoryRegistry.h>
 #include <cppunit/ui/text/TestRunner.h>
+
+#include <cstring>
 
 #include "defs.hpp"