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  • src/molecule.hpp

    reddea2 r273382  
    3535#include "Patterns/Observer.hpp"
    3636#include "Patterns/Cacheable.hpp"
    37 
    38 #include "Descriptors/MoleculeDescriptor_impl.hpp"
    3937
    4038/****************************************** forward declarations *****************************/
     
    9189  friend void DeleteMolecule(molecule *);
    9290  public:
     91    double cell_size[6];//!< cell size
    9392    const periodentafel * const elemente; //!< periodic table with each element
    9493    atom *start;        //!< start of atom list
     
    249248  Vector * DetermineCenterOfGravity();
    250249  Vector * DetermineCenterOfAll() const;
    251   Vector * DetermineCenterOfBox() const;
    252250  void SetNameFromFilename(const char *filename);
    253251  void SetBoxDimension(Vector *dim);
     
    295293  int FragmentMolecule(int Order, config *configuration);
    296294  bool CheckOrderAtSite(bool *AtomMask, Graph *GlobalKeySetList, int Order, int *MinimumRingSize, char *path = NULL);
    297   bool StoreBondsToFile(char *path, char *filename);
    298   bool StoreAdjacencyToFile(char *path, char *filename);
     295  bool StoreBondsToFile(char *path);
     296  bool StoreAdjacencyToFile(char *path);
    299297  bool CheckAdjacencyFileAgainstMolecule(char *path, atom **ListOfAtoms);
    300298  bool ParseOrderAtSiteFromFile(char *path);
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