Changeset 1c6081
- Timestamp:
- Jul 9, 2009, 10:38:53 AM (16 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 989bf6
- Parents:
- 70c333f
- Location:
- src
- Files:
-
- 4 edited
Legend:
- Unmodified
- Added
- Removed
-
src/datacreator.cpp
r70c333f r1c6081 54 54 * \return true if file was written successfully 55 55 */ 56 bool CreateDataEnergyOrder(class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum)56 bool CreateDataEnergyOrder(class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum) 57 57 { 58 58 stringstream filename; … … 87 87 * \return true if file was written successfully 88 88 */ 89 bool CreateDataDeltaEnergyOrder(class EnergyMatrix &Energy, class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum)89 bool CreateDataDeltaEnergyOrder(class EnergyMatrix &Energy, class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum) 90 90 { 91 91 stringstream filename; … … 124 124 * \return true if file was written successfully 125 125 */ 126 bool CreateDataForcesOrder(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateForce)(class MatrixContainer &, int))126 bool CreateDataForcesOrder(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix,const char *msg, const char *datum, void (*CreateForce)(class MatrixContainer &, int)) 127 127 { 128 128 stringstream filename; … … 156 156 * \return true if file was written successfully 157 157 */ 158 bool CreateDataDeltaForcesOrder(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateForce)(class MatrixContainer &, int))158 bool CreateDataDeltaForcesOrder(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum, void (*CreateForce)(class MatrixContainer &, int)) 159 159 { 160 160 stringstream filename; … … 188 188 * \return true if file was written successfully 189 189 */ 190 bool CreateDataDeltaForcesOrderPerAtom(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum)190 bool CreateDataDeltaForcesOrderPerAtom(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum) 191 191 { 192 192 stringstream filename; … … 213 213 norm += Force.Matrix[Force.MatrixCounter][ j ][l+m]*Force.Matrix[Force.MatrixCounter][ j ][l+m]; 214 214 norm = sqrt(norm); 215 } 215 } 216 216 // if (norm < MYEPSILON) 217 217 output << scientific << Fragments.Matrix[Fragments.MatrixCounter][ j ][l] << "\t"; … … 235 235 * \return true if file was written successfully 236 236 */ 237 bool CreateDataForcesOrderPerAtom(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum)237 bool CreateDataForcesOrderPerAtom(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum) 238 238 { 239 239 stringstream filename; … … 264 264 /** Plot matrix vs. fragment. 265 265 */ 266 bool CreateDataFragment(class MatrixContainer &Fragment, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateFragment)(class MatrixContainer &, int))266 bool CreateDataFragment(class MatrixContainer &Fragment, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum, void (*CreateFragment)(class MatrixContainer &, int)) 267 267 { 268 268 stringstream filename; … … 329 329 /** Plot matrix vs. fragment. 330 330 */ 331 bool CreateDataFragmentOrder(class MatrixContainer &Fragment, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateFragmentOrder)(class MatrixContainer &, class KeySetsContainer &, int))331 bool CreateDataFragmentOrder(class MatrixContainer &Fragment, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum, void (*CreateFragmentOrder)(class MatrixContainer &, class KeySetsContainer &, int)) 332 332 { 333 333 stringstream filename; … … 649 649 { 650 650 stringstream line(Force.Header); 651 c har *fillcolor[5] = {"black", "red", "blue", "green", "cyan"};651 const char *fillcolor[5] = {"black", "red", "blue", "green", "cyan"}; 652 652 string token; 653 653 … … 681 681 { 682 682 stringstream line(Force.Header); 683 c har *fillcolor[5] = {"black", "red", "blue", "green", "cyan"};683 const char *fillcolor[5] = {"black", "red", "blue", "green", "cyan"}; 684 684 string token; 685 685 -
src/datacreator.hpp
r70c333f r1c6081 20 20 bool AppendOutputFile(ofstream &output, const char *dir, const char *filename); 21 21 22 bool CreateDataEnergyOrder(class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum);23 bool CreateDataDeltaEnergyOrder(class EnergyMatrix &Energy, class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum);24 bool CreateDataForcesOrder(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateForce)(class MatrixContainer &, int));25 bool CreateDataForcesOrderPerAtom(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum);26 bool CreateDataDeltaForcesOrder(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateForce)(class MatrixContainer &, int));27 bool CreateDataDeltaForcesOrderPerAtom(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum);28 bool CreateDataFragment(class MatrixContainer &ForceFragments, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateForce)(class MatrixContainer &, int));29 bool CreateDataFragmentOrder(class MatrixContainer &Fragment, class KeySetsContainer &KeySet, c har *dir, char *prefix, char *msg,char *datum, void (*CreateFragmentOrder)(class MatrixContainer &, class KeySetsContainer &, int));22 bool CreateDataEnergyOrder(class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum); 23 bool CreateDataDeltaEnergyOrder(class EnergyMatrix &Energy, class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum); 24 bool CreateDataForcesOrder(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum, void (*CreateForce)(class MatrixContainer &, int)); 25 bool CreateDataForcesOrderPerAtom(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum); 26 bool CreateDataDeltaForcesOrder(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum, void (*CreateForce)(class MatrixContainer &, int)); 27 bool CreateDataDeltaForcesOrderPerAtom(class ForceMatrix &Force, class ForceMatrix &Fragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum); 28 bool CreateDataFragment(class MatrixContainer &ForceFragments, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum, void (*CreateForce)(class MatrixContainer &, int)); 29 bool CreateDataFragmentOrder(class MatrixContainer &Fragment, class KeySetsContainer &KeySet, const char *dir, const char *prefix, const char *msg, const char *datum, void (*CreateFragmentOrder)(class MatrixContainer &, class KeySetsContainer &, int)); 30 30 31 31 void CreateEnergy(class MatrixContainer &Energy, int MatrixNumber); -
src/parser.cpp
r70c333f r1c6081 208 208 * \return parsing successful 209 209 */ 210 bool MatrixContainer::ParseFragmentMatrix(c har *name,char *prefix, string suffix, int skiplines, int skipcolumns)210 bool MatrixContainer::ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns) 211 211 { 212 212 char filename[1023]; … … 258 258 * \return Allocation successful 259 259 */ 260 bool MatrixContainer::AllocateMatrix(c har *GivenHeader, int MCounter, int *RCounter, int CCounter)260 bool MatrixContainer::AllocateMatrix(const char *GivenHeader, int MCounter, int *RCounter, int CCounter) 261 261 { 262 262 Header = (char *) Malloc(sizeof(char)*1024, "MatrixContainer::ParseFragmentMatrix: *EnergyHeader"); … … 516 516 * \return parsing successful 517 517 */ 518 bool EnergyMatrix::ParseFragmentMatrix(c har *name,char *prefix, string suffix, int skiplines, int skipcolumns)518 bool EnergyMatrix::ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns) 519 519 { 520 520 char filename[1024]; … … 548 548 * \return parsing successful 549 549 */ 550 bool ForceMatrix::ParseIndices(c har *name)550 bool ForceMatrix::ParseIndices(const char *name) 551 551 { 552 552 ifstream input; … … 626 626 * \return parsing successful 627 627 */ 628 bool ForceMatrix::ParseFragmentMatrix(c har *name,char *prefix, string suffix, int skiplines, int skipcolumns)628 bool ForceMatrix::ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns) 629 629 { 630 630 char filename[1023]; -
src/parser.hpp
r70c333f r1c6081 52 52 53 53 bool ParseMatrix(const char *name, int skiplines, int skipcolumns, int MatrixNr); 54 virtual bool ParseFragmentMatrix(c har *name,char *prefix, string suffix, int skiplines, int skipcolumns);55 bool AllocateMatrix(c har *GivenHeader, int MCounter, int *RCounter, int CCounter);54 virtual bool ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns); 55 bool AllocateMatrix(const char *GivenHeader, int MCounter, int *RCounter, int CCounter); 56 56 bool ResetMatrix(); 57 57 double FindMinValue(); … … 72 72 bool ParseIndices(); 73 73 bool SumSubEnergy(class EnergyMatrix &Fragments, class EnergyMatrix *CorrectionFragments, class KeySetsContainer &KeySet, int Order, double sign); 74 bool ParseFragmentMatrix(c har *name,char *prefix, string suffix, int skiplines, int skipcolumns);74 bool ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns); 75 75 }; 76 76 … … 79 79 class ForceMatrix : public MatrixContainer { 80 80 public: 81 bool ParseIndices(c har *name);81 bool ParseIndices(const char *name); 82 82 bool SumSubForces(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, int Order, double sign); 83 bool ParseFragmentMatrix(c har *name,char *prefix, string suffix, int skiplines, int skipcolumns);83 bool ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns); 84 84 }; 85 85
Note:
See TracChangeset
for help on using the changeset viewer.