Changeset 104524 for src/UIElements/CommandLineUI

Timestamp:

Jun 9, 2010, 2:04:54 PM (15 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

94d131

Parents:

c78d44

git-author:

Frederik Heber <heber@…> (06/09/10 11:21:58)

git-committer:

Frederik Heber <heber@…> (06/09/10 14:04:54)

Message:

Changed PairCorrelationAction to incorporate all three cases and handled different parameters needed for each, changed queryElement to list of elements.

PairCorrelationAction:

• PairCorrelationAction has now three cases for Pair, Point and Surface.
• removed PairCorrelationToPointAction, PairCorrelationToSurfaceAction files and from Makefile.am

queryElement:

• queryElement, ElementCommandLineQuery, ElementTextQuery, ElementQuery all changed to use vector<element *>* instead of element
• ChangeElementAction changed accordingly
• oldmenu::AddAtoms() changed accordingly

Others:

• CommandLineWindow::populateAnalysisActions() - missing MolecularVolumeAction and PrinicipalAxisSystemAction.

Location:

src/UIElements/CommandLineUI

Files:

• CommandLineDialog.cpp (modified) (4 diffs)
• CommandLineDialog.hpp (modified) (2 diffs)
• CommandLineWindow.cpp (modified) (2 diffs)

src/UIElements/CommandLineUI/CommandLineDialog.cpp

@@ -7 +7 @@
 
 
-#include <cassert>
 #include <iostream>
+#include <vector>
 
 #include <Descriptors/AtomDescriptor.hpp>
@@ -80 +80 @@
 }
 
-void CommandLineDialog::queryElement(const char* title, const element **target, string _description){
+void CommandLineDialog::queryElement(const char* title, std::vector<element *> *target, string _description){
   registerQuery(new ElementCommandLineQuery(title,target, _description));
 }
@@ -231 +231 @@
 }
 
-CommandLineDialog::ElementCommandLineQuery::ElementCommandLineQuery(string title, const element **target, string _description) :
+CommandLineDialog::ElementCommandLineQuery::ElementCommandLineQuery(string title, std::vector<element *> *target, string _description) :
     Dialog::ElementQuery(title,target, _description)
 {}
@@ -240 +240 @@
 bool CommandLineDialog::ElementCommandLineQuery::handle() {
   // TODO: vector of ints and removing first is not correctly implemented yet. How to remove from a vector?
-  int Z;
+  periodentafel *periode = World::getInstance().getPeriode();
+  element *elemental = NULL;
   if (CommandLineParser::getInstance().vm.count(getTitle())) {
     vector<int> AllElements = CommandLineParser::getInstance().vm[getTitle()].as< vector<int> >();
-    vector<int>::iterator ElementRunner = AllElements.begin();
-    Z = *ElementRunner;
-    // TODO: So far, this does not really erase the element in the parsed list.
-    AllElements.erase(ElementRunner);
-    tmp = World::getInstance().getPeriode()->FindElement(Z);
-    return true;
-  } else
-    return false;
-}
+    for (vector<int>::iterator ZRunner = AllElements.begin(); ZRunner != AllElements.end(); ++ZRunner) {
+      elemental = periode->FindElement(*ZRunner);
+      ASSERT(elemental != NULL, "Invalid element specified in ElementCommandLineQuery");
+      elements.push_back(elemental);
+    }
+    return true;
+  } else
+    return false;
+}

src/UIElements/CommandLineUI/CommandLineDialog.hpp

@@ -36 +36 @@
   virtual void queryVector(const char*,Vector *,const double * const,bool, std::string = "");
   virtual void queryBox(const char*,double ** const, std::string = "");
-  virtual void queryElement(const char*,const element **, std::string = "");
+  virtual void queryElement(const char*, std::vector<element *> *, std::string = "");
 
 protected:
@@ -105 +105 @@
   class ElementCommandLineQuery : public Dialog::ElementQuery {
   public:
-    ElementCommandLineQuery(std::string title, const element **_target, std::string _description = "");
+    ElementCommandLineQuery(std::string title, std::vector<element *> *_target, std::string _description = "");
     virtual ~ElementCommandLineQuery();
     virtual bool handle();

src/UIElements/CommandLineUI/CommandLineWindow.cpp

@@ -12 +12 @@
 
 #include "Actions/ActionRegistry.hpp"
+#include "Actions/AnalysisAction/MolecularVolumeAction.hpp"
 #include "Actions/AnalysisAction/PairCorrelationAction.hpp"
-#include "Actions/AnalysisAction/PairCorrelationToPointAction.hpp"
-#include "Actions/AnalysisAction/PairCorrelationToSurfaceAction.hpp"
+#include "Actions/AnalysisAction/PrincipalAxisSystemAction.hpp"
 #include "Actions/AtomAction/AddAction.hpp"
 #include "Actions/AtomAction/ChangeElementAction.hpp"
@@ -95 +95 @@
 void CommandLineWindow::populateAnalysisActions()
 {
+  new AnalysisMolecularVolumeAction();
   new AnalysisPairCorrelationAction();
-  new AnalysisPairCorrelationToPointAction();
-  new AnalysisPairCorrelationToSurfaceAction();
+  new AnalysisPrincipalAxisSystemAction();
 }