Changeset 042f82 for src/parser.hpp
- Timestamp:
- Jul 23, 2009, 2:21:57 PM (16 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 36ec71
- Parents:
- 205ccd
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/parser.hpp
r205ccd r042f82 40 40 41 41 class MatrixContainer { 42 43 44 45 46 47 48 42 public: 43 double ***Matrix; 44 int **Indices; 45 char *Header; 46 int MatrixCounter; 47 int *RowCounter; 48 int ColumnCounter; 49 49 50 51 50 MatrixContainer(); 51 virtual ~MatrixContainer(); 52 52 53 54 55 56 57 58 59 60 61 62 63 64 65 53 bool ParseMatrix(const char *name, int skiplines, int skipcolumns, int MatrixNr); 54 virtual bool ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns); 55 bool AllocateMatrix(const char *GivenHeader, int MCounter, int *RCounter, int CCounter); 56 bool ResetMatrix(); 57 double FindMinValue(); 58 double FindMaxValue(); 59 bool SetLastMatrix(double value, int skipcolumns); 60 bool SetLastMatrix(double **values, int skipcolumns); 61 //bool ParseIndices(); 62 //bool SumSubValues(); 63 bool SumSubManyBodyTerms(class MatrixContainer &Matrix, class KeySetsContainer &KeySet, int Order); 64 bool WriteTotalFragments(const char *name, const char *prefix); 65 bool WriteLastMatrix(const char *name, const char *prefix, const char *suffix); 66 66 }; 67 67 … … 69 69 70 70 class EnergyMatrix : public MatrixContainer { 71 72 73 74 71 public: 72 bool ParseIndices(); 73 bool SumSubEnergy(class EnergyMatrix &Fragments, class EnergyMatrix *CorrectionFragments, class KeySetsContainer &KeySet, int Order, double sign); 74 bool ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns); 75 75 }; 76 76 … … 78 78 79 79 class ForceMatrix : public MatrixContainer { 80 81 82 83 80 public: 81 bool ParseIndices(const char *name); 82 bool SumSubForces(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, int Order, double sign); 83 bool ParseFragmentMatrix(const char *name, const char *prefix, string suffix, int skiplines, int skipcolumns); 84 84 }; 85 85 … … 87 87 88 88 class KeySetsContainer { 89 90 91 92 93 94 95 89 public: 90 int **KeySets; 91 int *AtomCounter; 92 int FragmentCounter; 93 int Order; 94 int *FragmentsPerOrder; 95 int **OrderSet; 96 96 97 98 97 KeySetsContainer(); 98 ~KeySetsContainer(); 99 99 100 101 102 100 bool ParseKeySets(const char *name, const int *ACounter, const int FCounter); 101 bool ParseManyBodyTerms(); 102 bool Contains(const int GreaterSet, const int SmallerSet); 103 103 }; 104 104
Note:
See TracChangeset
for help on using the changeset viewer.