source: tests/regression/Filling/FillSurface/testsuite-fill-surface-micelle.at@ df9f20

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since df9f20 was df9f20, checked in by Frederik Heber <heber@…>, 10 years ago

Refactored FillSurfaceAction to also use FillerPreparators.

  • Property mode set to 100644
File size: 3.9 KB
Line 
1#
2# MoleCuilder - creates and alters molecular systems
3# Copyright (C) 2014 Frederik Heber
4#
5# This program is free software: you can redistribute it and/or modify
6# it under the terms of the GNU General Public License as published by
7# the Free Software Foundation, either version 3 of the License, or
8# (at your option) any later version.
9#
10# This program is distributed in the hope that it will be useful,
11# but WITHOUT ANY WARRANTY; without even the implied warranty of
12# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13# GNU General Public License for more details.
14#
15# You should have received a copy of the GNU General Public License
16# along with this program. If not, see <http://www.gnu.org/licenses/>.
17#
18### create Micelle by filling sphere's surface
19
20AT_SETUP([Filling - Creating micelle by surface filling])
21AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system])
22
23file=tensid.data
24AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
25AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
26AT_CHECK([chmod u+w $file], 0)
27AT_CHECK([../../molecuilder \
28 --parse-tremolo-potentials tensid.potentials \
29 -i $file \
30 --select-all-molecules \
31 --rotate-to-principal-axis-system "0,0,-1" \
32 --create-shape \
33 --shape-name "sphere1" \
34 --shape-type "sphere" \
35 --translation "0,0,0" \
36 --stretch "20.,20.,20." \
37 --select-shape-by-name "sphere1" \
38 --fill-surface \
39 --count 20 \
40 --min-distance 3.1 \
41 --Alignment-Axis "0,0,1"
42], 0, [stdout], [stderr])
43AT_CHECK([grep "20 out of 20 returned true from predicate" stdout], 0, [ignore], [ignore])
44AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/tensid.data], 0, [ignore], [ignore])
45
46AT_CLEANUP
47
48
49AT_SETUP([Filling - Creating micelle by surface filling with Undo])
50AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system undo])
51
52file=tensid-undo.data
53AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
54AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
55AT_CHECK([chmod u+w $file], 0)
56AT_CHECK([../../molecuilder \
57 --parse-tremolo-potentials tensid.potentials \
58 -i $file \
59 --select-all-molecules \
60 --rotate-to-principal-axis-system "0,0,-1" \
61 --create-shape \
62 --shape-name "sphere1" \
63 --shape-type "sphere" \
64 --translation "0,0,0" \
65 --stretch "20.,20.,20." \
66 --select-shape-by-name "sphere1" \
67 --fill-surface \
68 --count 20 \
69 --min-distance 3.1 \
70 --Alignment-Axis "0,0,1" \
71 --undo
72], 0, [stdout], [stderr])
73AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/$file], 0, [ignore], [ignore])
74
75AT_CLEANUP
76
77
78AT_SETUP([Filling - Creating micelle by surface filling with Redo])
79AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system redo])
80
81file=tensid.data
82AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
83AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
84AT_CHECK([chmod u+w $file], 0)
85AT_CHECK([../../molecuilder \
86 --parse-tremolo-potentials tensid.potentials \
87 -i $file \
88 --select-all-molecules \
89 --rotate-to-principal-axis-system "0,0,-1" \
90 --create-shape \
91 --shape-name "sphere1" \
92 --shape-type "sphere" \
93 --translation "0,0,0" \
94 --stretch "20.,20.,20." \
95 --select-shape-by-name "sphere1" \
96 --fill-surface \
97 --count 20 \
98 --min-distance 3.1 \
99 --Alignment-Axis "0,0,1" \
100 --undo \
101 --redo
102], 0, [stdout], [stderr])
103AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/tensid.data], 0, [ignore], [ignore])
104
105AT_CLEANUP
Note: See TracBrowser for help on using the repository browser.