source: tests/regression/Filling/FillSurface/testsuite-fill-surface-micelle.at@ 92d0e6

Action_Thermostats Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_StructOpt_integration_tests AutomationFragmentation_failures Candidate_v1.6.1 ChemicalSpaceEvaluator Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Exclude_Hydrogens_annealWithBondGraph Fix_Verbose_Codepatterns ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion Gui_displays_atomic_force_velocity JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool PythonUI_with_named_parameters Recreated_GuiChecks StoppableMakroAction TremoloParser_IncreasedPrecision
Last change on this file since 92d0e6 was 2fe4a5, checked in by Frederik Heber <heber@…>, 9 years ago

TESTFIX: Changed all parse-tremolo-potential calls to parse-particle-parameters.

  • also in boxmaker.py.in.
  • Property mode set to 100644
File size: 3.9 KB
Line 
1#
2# MoleCuilder - creates and alters molecular systems
3# Copyright (C) 2014 Frederik Heber
4#
5# This program is free software: you can redistribute it and/or modify
6# it under the terms of the GNU General Public License as published by
7# the Free Software Foundation, either version 3 of the License, or
8# (at your option) any later version.
9#
10# This program is distributed in the hope that it will be useful,
11# but WITHOUT ANY WARRANTY; without even the implied warranty of
12# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13# GNU General Public License for more details.
14#
15# You should have received a copy of the GNU General Public License
16# along with this program. If not, see <http://www.gnu.org/licenses/>.
17#
18### create Micelle by filling sphere's surface
19
20AT_SETUP([Filling - Creating micelle by surface filling])
21AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system])
22
23file=tensid.data
24AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
25AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
26AT_CHECK([chmod u+w $file], 0)
27AT_CHECK([../../molecuilder \
28 --parse-particle-parameters tensid.potentials \
29 -i $file \
30 --select-all-molecules \
31 --rotate-to-principal-axis-system "0,0,-1" \
32 --create-shape \
33 --shape-name "sphere1" \
34 --shape-type "sphere" \
35 --translation "0,0,0" \
36 --stretch "20.,20.,20." \
37 --select-shape-by-name "sphere1" \
38 --fill-surface \
39 --count 20 \
40 --min-distance 3.1 \
41 --Alignment-Axis "0,0,1"
42], 0, [stdout], [stderr])
43AT_CHECK([grep "20 out of 20 returned true from predicate" stdout], 0, [ignore], [ignore])
44AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/tensid.data], 0, [ignore], [ignore])
45
46AT_CLEANUP
47
48
49AT_SETUP([Filling - Creating micelle by surface filling with Undo])
50AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system undo])
51
52file=tensid-undo.data
53AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
54AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
55AT_CHECK([chmod u+w $file], 0)
56AT_CHECK([../../molecuilder \
57 --parse-particle-parameters tensid.potentials \
58 -i $file \
59 --select-all-molecules \
60 --rotate-to-principal-axis-system "0,0,-1" \
61 --create-shape \
62 --shape-name "sphere1" \
63 --shape-type "sphere" \
64 --translation "0,0,0" \
65 --stretch "20.,20.,20." \
66 --select-shape-by-name "sphere1" \
67 --fill-surface \
68 --count 20 \
69 --min-distance 3.1 \
70 --Alignment-Axis "0,0,1" \
71 --undo
72], 0, [stdout], [stderr])
73AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/$file], 0, [ignore], [ignore])
74
75AT_CLEANUP
76
77
78AT_SETUP([Filling - Creating micelle by surface filling with Redo])
79AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system redo])
80
81file=tensid.data
82AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
83AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
84AT_CHECK([chmod u+w $file], 0)
85AT_CHECK([../../molecuilder \
86 --parse-particle-parameters tensid.potentials \
87 -i $file \
88 --select-all-molecules \
89 --rotate-to-principal-axis-system "0,0,-1" \
90 --create-shape \
91 --shape-name "sphere1" \
92 --shape-type "sphere" \
93 --translation "0,0,0" \
94 --stretch "20.,20.,20." \
95 --select-shape-by-name "sphere1" \
96 --fill-surface \
97 --count 20 \
98 --min-distance 3.1 \
99 --Alignment-Axis "0,0,1" \
100 --undo \
101 --redo
102], 0, [stdout], [stderr])
103AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/tensid.data], 0, [ignore], [ignore])
104
105AT_CLEANUP
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