| 1 | #key    value | 
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| 2 | actionname      "help" | 
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| 3 | add-atom        "1" | 
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| 4 | add-empty-boundary      "" | 
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| 5 | Alignment-Axis  "0,0,1" | 
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| 6 | angle-x "0." | 
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| 7 | angle-x "0" | 
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| 8 | angle-y "0." | 
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| 9 | angle-y "0" | 
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| 10 | angle-z "0 " | 
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| 11 | angle-z "0." | 
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| 12 | angle-z "0" | 
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| 13 | axis    "0 0 1" | 
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| 14 | axis    "0 1 0" | 
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| 15 | axis    "1 2 1" | 
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| 16 | bin-end "10" | 
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| 17 | bin-end "20" | 
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| 18 | bin-end "359" | 
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| 19 | bin-end "359.5" | 
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| 20 | bin-end "5" | 
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| 21 | bin-output-file "bin_output-10.csv" | 
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| 22 | bin-output-file "bin_output-20.csv" | 
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| 23 | bin-output-file "bin_output-5.csv" | 
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| 24 | bin-output-file "bin_output.csv" | 
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| 25 | bin-output-file "emptybox_histogram.dat" | 
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| 26 | bin-output-file "hydrogenbox_histogram.dat" | 
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| 27 | bin-output-file "waterbox_histogram.dat" | 
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| 28 | bin-output-file "waterbox-mirrored_histogram.dat" | 
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| 29 | bin-start       "0" | 
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| 30 | bin-start       "-0.5" | 
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| 31 | bin-start       "10" | 
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| 32 | bin-start       "5" | 
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| 33 | bin-width       "1." | 
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| 34 | bond-file       "bond.dat" | 
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| 35 | bond-table      "table.dat" | 
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| 36 | calculate-bounding-box  "" | 
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| 37 | calculate-molar-mass    "" | 
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| 38 | center  "10. 10. 10." | 
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| 39 | center-in-box   "10 0 0 10 0 10" | 
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| 40 | change-box      "10 0 0 10 0 10" | 
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| 41 | change-element  "H" | 
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| 42 | change-molname  "water" | 
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| 43 | convex-file     "convexfile" | 
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| 44 | copy-molecule   "0" | 
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| 45 | count   "12" | 
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| 46 | create-micelle  "200" | 
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| 47 | default-molname "molname" | 
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| 48 | deltat  "0.01" | 
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| 49 | depth-first-search      "2." | 
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| 50 | dipole-angular-correlation      "H2O" | 
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| 51 | distance        "1.55" | 
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| 52 | distances       "3.1 3.1 3.1" | 
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| 53 | distances       "3.1 3.1 3.1" | 
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| 54 | distance-to-boundary    "1." | 
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| 55 | distance-to-molecule    "1.5" | 
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| 56 | distance-to-molecule    "2.1" | 
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| 57 | domain-position "0.  0. 0." | 
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| 58 | domain-position "0 0 0" | 
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| 59 | domain-position "10. 10. 10." | 
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| 60 | DoRotate        "0" | 
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| 61 | DoSaturate      "0" | 
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| 62 | element-db      "./" | 
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| 63 | elements        "1" | 
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| 64 | elements        "1 8" | 
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| 65 | end-step        "1" | 
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| 66 | fastparsing     "1" | 
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| 67 | filename        "test.exttypes" | 
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| 68 | fill-molecule   "filler.xyz" | 
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| 69 | fill-void       "hydrogen.xyz" | 
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| 70 | fill-void       "water.data" | 
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| 71 | fill-void       "water.xyz" | 
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| 72 | fragment-molecule       "./" | 
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| 73 | id-mapping      "1" | 
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| 74 | input   "test.data" | 
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| 75 | interpolation-steps     "9" | 
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| 76 | keep-fixed-CenterOfMass "0" | 
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| 77 | load    "test.data" | 
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| 78 | MaxDistance     "-1" | 
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| 79 | MDSteps "1" | 
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| 80 | mesh-offset     "0.5,0.5,0.5" | 
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| 81 | mesh-size       "10,10,10" | 
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| 82 | min-distance    "1." | 
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| 83 | molecule-by-id  "0" | 
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| 84 | nonconvex-envelope      "25" | 
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| 85 | nonconvex-file  "NonConvexEnvelope" | 
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| 86 | nonconvex-file  "nonconvexfile" | 
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| 87 | offset  "0" | 
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| 88 | offset  "1" | 
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| 89 | order   "2" | 
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| 90 | output-file     "emptybox_values.dat" | 
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| 91 | output-file     "hydrogenbox_values.dat" | 
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| 92 | output-file     "output-10.csv" | 
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| 93 | output-file     "output-20.csv" | 
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| 94 | output-file     "output-5.csv" | 
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| 95 | output-file     "output.csv" | 
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| 96 | output-file     "waterbox-mirrored_values.dat" | 
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| 97 | output-file     "waterbox_values.dat" | 
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| 98 | output  "store.conf" | 
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| 99 | output  "store.data" | 
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| 100 | output  "store.pdb" | 
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| 101 | output  "store.xyz" | 
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| 102 | output  "test.in" | 
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| 103 | output-types    "xyz" | 
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| 104 | output-types    "xyz mpqc" | 
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| 105 | parse-tremolo-potentials        "argon.potentials" | 
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| 106 | parse-tremolo-potentials        "tensid.potentials" | 
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| 107 | parser-parameters       "mpqc" | 
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| 108 | parser-parameters       "psi3" | 
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| 109 | periodic        "0" | 
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| 110 | position        "0 0 0" | 
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| 111 | position        "0 0 1" | 
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| 112 | position        "0 0 10" | 
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| 113 | position        "10 10 10" | 
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| 114 | position        "10. 10. 10." | 
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| 115 | position        "1 2 1" | 
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| 116 | position        "5.63 5.71 5.71" | 
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| 117 | position        "7.283585982 3.275186040 3.535886037" | 
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| 118 | position        "9.78 2.64 2.64" | 
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| 119 | radius  "20." | 
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| 120 | random-atom-displacement        "0." | 
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| 121 | random-molecule-displacement    "0." | 
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| 122 | random-number-distribution-parameters   "max=20;" | 
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| 123 | random-number-engine-parameters "seed=2;" | 
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| 124 | repeat-box      "1 1 1" | 
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| 125 | rotate-around-origin    "180." | 
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| 126 | rotate-around-origin    "20." | 
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| 127 | rotate-around-origin    "360." | 
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| 128 | rotate-around-origin    "90." | 
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| 129 | rotate-around-self      "180." | 
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| 130 | rotate-around-self      "180" | 
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| 131 | rotate-around-self      "20." | 
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| 132 | rotate-around-self      "360." | 
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| 133 | rotate-around-self      "90." | 
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| 134 | rotate-to-principal-axis-system "" | 
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| 135 | save-adjacency  "test.adj" | 
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| 136 | save-bonds      "test.bond" | 
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| 137 | save-selected-atoms     "testsave.xyz" | 
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| 138 | save-selected-atoms-as-exttypes "test.exttypes" | 
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| 139 | save-selected-molecules "testsave.xyz" | 
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| 140 | save-temperature        "test.ekin" | 
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| 141 | scale-box       "0.5 1. 0.9" | 
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| 142 | select-atom-by-element  "1" | 
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| 143 | select-atom-by-element  "4" | 
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| 144 | select-atom-by-id       "0" | 
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| 145 | select-atom-by-order    "1" | 
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| 146 | select-atoms-inside-cuboid      "10 10 10" | 
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| 147 | select-atoms-inside-cuboid      "2 2 2" | 
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| 148 | select-atoms-inside-sphere      "0.2" | 
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| 149 | select-atoms-inside-sphere      "10" | 
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| 150 | select-atoms-inside-sphere      "7." | 
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| 151 | select-molecule-by-id   "0" | 
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| 152 | select-molecule-by-id   "1" | 
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| 153 | select-molecule-by-id   "4" | 
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| 154 | select-molecule-by-order        "-1" | 
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| 155 | select-molecule-by-order        "1" | 
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| 156 | select-molecule-by-order        "-2" | 
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| 157 | select-molecule-by-order        "2" | 
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| 158 | select-molecules-by-formula     "C2H5(OH)" | 
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| 159 | select-molecules-by-formula     "C6H6" | 
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| 160 | select-molecules-by-formula     "H2O" | 
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| 161 | select-molecules-by-name        "water" | 
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| 162 | set-boundary-conditions "Wrap, Wrap, Wrap" | 
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| 163 | set-parser-parameters   "basis = 4-31G" | 
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| 164 | set-parser-parameters   "basis = 4-31G;maxiter=499;theory=CLKS;" | 
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| 165 | set-parser-parameters   "maxiter = 499" | 
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| 166 | set-parser-parameters   "theory=CLKS" | 
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| 167 | set-parser-parameters   "wfn=scf" | 
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| 168 | set-parser-parameters   "ref=uhf" | 
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| 169 | set-output      "tremolo" | 
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| 170 | set-random-number-distribution  "uniform_int" | 
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| 171 | set-random-number-engine        "lagged_fibonacci607" | 
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| 172 | set-tremolo-atomdata    "ATOMDATA type id x=3" | 
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| 173 | set-world-time  "10" | 
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| 174 | skiplines       "1" | 
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| 175 | skiplines       "2" | 
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| 176 | start-step      "0" | 
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| 177 | suspend-in-water        "1.0" | 
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| 178 | tesselation-radius      "5." | 
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| 179 | time-step-zero  "0" | 
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| 180 | translate-atoms "1. 0. 0." | 
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| 181 | unselect-atom-by-element        "1" | 
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| 182 | unselect-atom-by-element        "4" | 
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| 183 | unselect-atom-by-id     "0" | 
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| 184 | unselect-atom-by-order  "1" | 
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| 185 | unselect-atoms-inside-cuboid    "10 10 10" | 
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| 186 | unselect-atoms-inside-cuboid    "2 2 2" | 
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| 187 | unselect-atoms-inside-sphere    "10" | 
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| 188 | unselect-atoms-inside-sphere    "7." | 
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| 189 | unselect-molecule-by-id "0" | 
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| 190 | unselect-molecule-by-id "4" | 
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| 191 | unselect-molecule-by-order      "-1" | 
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| 192 | unselect-molecule-by-order      "1" | 
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| 193 | unselect-molecule-by-order      "-2" | 
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| 194 | unselect-molecule-by-order      "2" | 
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| 195 | unselect-molecules-by-formula   "C2H5(OH)" | 
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| 196 | unselect-molecules-by-formula   "C3H8" | 
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| 197 | unselect-molecules-by-formula   "C6H6" | 
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| 198 | unselect-molecules-by-formula   "H2O" | 
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| 199 | unselect-molecules-by-name      "water" | 
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| 200 | verbose "3" | 
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| 201 | verlet-integration      "forces.dat" | 
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