source: tests/Fragmentations/Fragmenting/phenanthrene/testsuite-fragmenting-phenanthrene-order1.at@ 83cc3e

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Last change on this file since 83cc3e was c9db50, checked in by Frederik Heber <heber@…>, 11 years ago

FIX: Removed doubly occuring disclaimer in testsuite files in fragmentation.

  • Property mode set to 100644
File size: 2.0 KB
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1#
2# MoleCuilder - creates and alters molecular systems
3# Copyright (C) 2013 Frederik Heber
4#
5# This program is free software: you can redistribute it and/or modify
6# it under the terms of the GNU General Public License as published by
7# the Free Software Foundation, either version 3 of the License, or
8# (at your option) any later version.
9#
10# This program is distributed in the hope that it will be useful,
11# but WITHOUT ANY WARRANTY; without even the implied warranty of
12# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13# GNU General Public License for more details.
14#
15# You should have received a copy of the GNU General Public License
16# along with this program. If not, see <http://www.gnu.org/licenses/>.
17#
18### phenanthrene - order 1 w cycles
19
20AT_SETUP([Fragmentations - phenanthrene order 1 w cycles])
21AT_KEYWORDS([fragmentation non-convex-envelope])
22
23MOL=phenanthrene
24DISTANCE="2."
25FILENAME="BondFragment"
26
27CycleNo=3
28FragNo=14
29let FragNo=$FragNo+$CycleNo
30
31file=${MOL}.pdb
32AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/Fragmentations/Fragmenting/${MOL}/pre/$file $file], 0)
33AT_CHECK([chmod u+w $file], 0)
34
35AT_CHECK([../../molecuilder -i $file -I --select-molecule-by-id 0 --select-molecules-atoms -f $FILENAME --order 1 --distance $DISTANCE --DoCyclesFull 1 --output-types mpqc pcp pdb], 0, [stdout], [stderr])
36AT_CHECK([ls ${FILENAME}*.conf | wc -l | awk '{print $1}'], 0, [stdout], [ignore])
37AT_CHECK([test $FragNo == `cat stdout`], 0, [ignore], [ignore])
38AT_CHECK([ls ${FILENAME}*.pdb | wc -l | awk '{print $1}'], 0, [stdout], [ignore])
39AT_CHECK([test $FragNo == `cat stdout`], 0, [ignore], [ignore])
40AT_CHECK([ls ${FILENAME}*.in | wc -l | awk '{print $1}'], 0, [stdout], [ignore])
41AT_CHECK([test $FragNo == `cat stdout`], 0, [ignore], [ignore])
42
43# check cycles just have six non-hydrogen
44let i=$FragNo-$CycleNo
45while test $i -lt $FragNo; do
46 AT_CHECK([grep -c "^HETATM.*C 0" ${FILENAME}`printf %02d $i`.pdb], 0, [stdout], [ignore])
47 AT_CHECK([test 6 == `cat stdout`], 0, [ignore], [ignore])
48 let i=$i+1
49done
50
51AT_CLEANUP
52
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