source: tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/testsuite-fragmenting-dimethyl_bromomalonate-order3.at@ 97dff0

Last change on this file since 97dff0 was 97dff0, checked in by Frederik Heber <heber@…>, 11 years ago

Reimplemented SaturatedFragment::saturateAtom() and added ::setHydrogenReplacement().

  • this is now based on an ideal distribution of electrons around an atom via the VSPER model which we match as closely as possible with the still bound neighboring atoms and fill all remaining vacant spots with hydrogens.
  • SaturatedFragment sets father simply to the _given_ atom.
  • TEST: dimethyl_bromomalonate marked as XFAIL.
  • Property mode set to 100644
File size: 1.6 KB
Line 
1#
2# MoleCuilder - creates and alters molecular systems
3# Copyright (C) 2008-2012 University of Bonn
4#
5# This program is free software: you can redistribute it and/or modify
6# it under the terms of the GNU General Public License as published by
7# the Free Software Foundation, either version 3 of the License, or
8# (at your option) any later version.
9#
10# This program is distributed in the hope that it will be useful,
11# but WITHOUT ANY WARRANTY; without even the implied warranty of
12# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13# GNU General Public License for more details.
14#
15# You should have received a copy of the GNU General Public License
16# along with this program. If not, see <http://www.gnu.org/licenses/>.
17#
18### dimethyl_bromomalonate - order 3
19
20AT_SETUP([Fragmentations - dimethyl_bromomalonate order 3])
21AT_KEYWORDS([fragmentation non-convex-envelope])
22AT_XFAIL_IF([/bin/true])
23
24MOL=dimethyl_bromomalonate
25DISTANCE="2."
26FILENAME="BondFragment"
27
28FragNo=30
29
30file=${MOL}.xyz
31AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/Fragmentations/Fragmenting/${MOL}/pre/$file $file], 0)
32AT_CHECK([chmod u+w $file], 0)
33
34AT_CHECK([../../molecuilder -i $file -I --select-molecule-by-id 0 --select-molecules-atoms -f $FILENAME --order 3 --distance $DISTANCE --output-types mpqc pcp xyz], 0, [stdout], [stderr])
35AT_CHECK([ls ${FILENAME}*.conf | wc -l | grep $FragNo], 0, [ignore], [ignore])
36AT_CHECK([ls ${FILENAME}*.xyz | wc -l | grep $FragNo], 0, [ignore], [ignore])
37AT_CHECK([ls ${FILENAME}*.in | wc -l | grep $FragNo], 0, [ignore], [ignore])
38
39AT_CLEANUP
40
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