source: src@ b1b413

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Name Size Rev Age Author Last Change
../
Actions 43f2278   12 years FrederikHeber FIX: removed src/Actions/test.sh and src/ReMapDBondFileFromXYZ.py. - …
Analysis 03a589   13 years FrederikHeber Removed lots of remnant output functions in atom and molecule that are …
Atom 4f7f0bf   12 years ankele Fix: atom now sends IndexChanged notification
Bond af9be32   13 years FrederikHeber Added BondInfo to store bond's state information for later …
Descriptors 57f743   13 years FrederikHeber FIX: AtomIdDescriptor was not using internal_iterator but full …
documentation a10cc0   13 years FrederikHeber Moved all Fragmentation/Automation into new subpackage JobMarket. - …
Dynamics 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Element 1ce04b   13 years FrederikHeber TYPO in comment
Filling d496fd   13 years FrederikHeber FIX: SurfaceInserter now always normalizes alignedAxis in cstor.
Fragmentation a10cc0   13 years FrederikHeber Moved all Fragmentation/Automation into new subpackage JobMarket. - …
Graph 108968   13 years FrederikHeber FIX: Rewrite of BondGraph's CreateAdjacency() and …
Helpers a98122   12 years FrederikHeber FIX: AtomicLengthToAnstroem was not consistent with CODATA1986.
Jobs b5c39c   13 years FrederikHeber DISTFIX: removed JobMarket/ prefix in install path for headers of …
LinkedCell ce7bfd   13 years FrederikHeber VERBOSE: Subsequent change in verbosity levels of many tesselation …
Parameters c3ecde   12 years FrederikHeber FIX: KeyValueValidator did not understand more than one keyvalue pair. …
Parser 856d05   12 years FrederikHeber MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - …
RandomNumbers 2169e0   13 years FrederikHeber RandomNumberEngineNameValidator implemented
Shapes 5d4179f   12 years FrederikHeber Fixed minimal radius, so r will never be 0.
Tesselation c1d78c   13 years FrederikHeber FIX: Tesselation_BoundaryTriangleUnitTest did not properly removed …
Thermostats 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
UIElements 856d05   12 years FrederikHeber MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - …
unittests 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
AtomIdSet.cpp 5.2 KB ​ 6aad6f   13 years FrederikHeber FIX: molecule::containsAtom() is now const and has const param, added …
AtomIdSet.hpp 1.8 KB ​ 6aad6f   13 years FrederikHeber FIX: molecule::containsAtom() is now const and has const param, added …
Box.cpp 11.4 KB ​ 97f9b9   13 years FrederikHeber SetBoundaryConditionsAction requires vector<string> instead of string …
Box.hpp 4.6 KB ​ 97f9b9   13 years FrederikHeber SetBoundaryConditionsAction requires vector<string> instead of string …
Box_BoundaryConditions.cpp 6.7 KB ​ 97f9b9   13 years FrederikHeber SetBoundaryConditionsAction requires vector<string> instead of string …
Box_BoundaryConditions.hpp 2.4 KB ​ de2031   13 years FrederikHeber BoundaryConditionValidator implemented
builder.cpp 858 bytes ​ 05a05e   12 years ankele only saveAll() on exit when using CommandLineUI
builder_init.cpp 3.9 KB ​ 5ca6b5   12 years ankele drop deprecated references to ValueStorage
builder_init.hpp 329 bytes ​ b5d38d   13 years FrederikHeber Moved dumpMemory() and saveAll() from module builder_init to cleanUp.
cleanUp.cpp 4.7 KB ​ 856d05   12 years FrederikHeber MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - …
cleanUp.hpp 354 bytes ​ 567357   13 years FrederikHeber FIX: cleanUp() replaced by module_reinit() and .._exit() in …
config.cpp 1.1 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
config.hpp 483 bytes ​ 41a467   13 years FrederikHeber LARGE: config class is now just a tiny container. - this was …
controller.cpp 552 bytes ​ 7da5cd   13 years FrederikHeber Moved all Controller.., ..Options, and .._main() files over to JobMarket.
controller_AddOn_MPQCCommandJob.cpp 579 bytes ​ 014bc4   13 years FrederikHeber Introduced interface controller_AddOn.hpp that encapsulates controller …
controller_MPQCCommandJob.cpp 13.1 KB ​ 856d05   12 years FrederikHeber MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - …
controller_MPQCCommandJob.hpp 1.1 KB ​ 856d05   12 years FrederikHeber MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - …
ControllerOptions_MPQCCommandJob.cpp 1.8 KB ​ 856d05   12 years FrederikHeber MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - …
ControllerOptions_MPQCCommandJob.hpp 910 bytes ​ 856d05   12 years FrederikHeber MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - …
Formula.cpp 14.5 KB ​ ed26ae   13 years FrederikHeber Renamed calls to element::getNumber() -> ::getAtomicNumber(). - …
Formula.hpp 4.0 KB ​ 47ed3d   13 years FrederikHeber Removed some old output functions in element, Formula, and molecule. …
IdPool.hpp 2.8 KB ​ b97a60   13 years FrederikHeber Modified IdPool implementation to give either unique or continuous …
IdPool_impl.hpp 3.7 KB ​ 5a4cbc   13 years FrederikHeber VERBOSITY: Increased verbosity threshold of some outputs connected to …
IdPool_policy.hpp 1.0 KB ​ b97a60   13 years FrederikHeber Modified IdPool implementation to give either unique or continuous …
Makefile.am 15.0 KB ​ 158c3d9   12 years FrederikHeber FIX: Removed out-dated libmenu.a in src/Makefile.am.
molecule.cpp 37.2 KB ​ 575343   13 years FrederikHeber added OBSERVE to molecule::SetNameFromFilename
molecule.hpp 8.9 KB ​ 5b6a4b7   12 years ankele molecule: RotateToPrincipalAxisSystem only needs a const Vector for axis
molecule_geometry.cpp 17.6 KB ​ 5b6a4b7   12 years ankele molecule: RotateToPrincipalAxisSystem only needs a const Vector for axis
molecule_graph.cpp 13.3 KB ​ 52ed5b   13 years FrederikHeber Ids handed out by molecule now start with 1. - this required some …
MoleculeLeafClass.cpp 9.3 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
MoleculeLeafClass.hpp 1.4 KB ​ 07a47e   13 years FrederikHeber Replaced enable/disable-hydrogen by internal switch. - changes in …
moleculelist.cpp 21.2 KB ​ 66dc36   12 years FrederikHeber FIX: Written fragments are not centered on edge and stored. - this …
MoleculeListClass.hpp 1.4 KB ​ 4d2b33   13 years FrederikHeber FIX: molecule does not need a periodentafel. - removed periodentafel …
poolworker.cpp 542 bytes ​ 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
Server.cpp 529 bytes ​ 004d5c   13 years FrederikHeber Removed JobMarket as it is now in its own repository. - added …
types.hpp 482 bytes ​ 56f73b   14 years FrederikHeber Added config.h also to all header files, code check test ascertain …
version.h 103 bytes ​ 5f8660a   14 years FrederikHeber Changed PACKAGENAME and version. - rename ESPACKVersion in …
World.cpp 22.3 KB ​ 65d7ca   12 years ankele Fix: World::registerAtom() did not notify observers
World.hpp 15.6 KB ​ 992bd5   13 years ankele fixed some typoes in comments
World_calculations.hpp 743 bytes ​ 3139b2   13 years FrederikHeber Renamed ActionTrait and ActionTraits. - the specialized Trait …
WorldTime.cpp 1.6 KB ​ c0ed1e   13 years FrederikHeber FIX: WorldTime::setTime only gives update when given time step is …
WorldTime.hpp 2.0 KB ​ 040a5c   13 years FrederikHeber WorldTime is now Observable. - this is required for the …
  • Property mode set to 040000
Note: See TracBrowser for help on using the repository browser.