source: src@ 5972c3

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Name Size Rev Age Author Last Change
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unittests 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
UIElements 57a770   13 years FrederikHeber Corrected verbosity levels of GLMoleculeObject..., GLWorldScene, and …
Thermostats 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Tesselation 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Shapes 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
RandomNumbers 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Parser 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
LinkedCell 5972c3   13 years FrederikHeber MEMFIX: LinkedCell_Model did not release N (Linked cell array).
Helpers 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Graph 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Fragmentation c9cafa   13 years FrederikHeber Some warning fixes. comparison signed/unsigned: - …
Element 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Dynamics 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
documentation 7afb77   13 years FrederikHeber Added AtomsWithinDistanceOf descriptor. - this is basically just a …
Descriptors 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Bond 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Atom c9cafa   13 years FrederikHeber Some warning fixes. comparison signed/unsigned: - …
Analysis 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Actions 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
WorldTime.hpp 1.9 KB ​ ce7fdc   13 years FrederikHeber HUGE: All Action-related codes resides now in namespace MoleCuilder. …
WorldTime.cpp 777 bytes ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
World_calculations.hpp 743 bytes ​ 3139b2   13 years FrederikHeber Renamed ActionTrait and ActionTraits. - the specialized Trait …
World.hpp 15.6 KB ​ 4834f4   13 years FrederikHeber World now has a LinkedCell_Controller and function getLinkedCell(). - …
World.cpp 19.7 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
version.h 103 bytes ​ 5f8660a   14 years FrederikHeber Changed PACKAGENAME and version. - rename ESPACKVersion in …
types.hpp 482 bytes ​ 56f73b   14 years FrederikHeber Added config.h also to all header files, code check test ascertain …
ReMapDBondFileFromXYZ.py 5.9 KB ​ f683fe   16 years neuen Parses a pdb and xyz file and decideds which atoms are in both and …
MoleculeListClass.hpp 1.6 KB ​ 02ce36   13 years FrederikHeber We now require CodePatterns 1.2.0. - this is due to the updated …
moleculelist.cpp 23.1 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
MoleculeLeafClass.hpp 1.4 KB ​ 07a47e   13 years FrederikHeber Replaced enable/disable-hydrogen by internal switch. - changes in …
MoleculeLeafClass.cpp 9.3 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
molecule_graph.cpp 13.3 KB ​ c9cafa   13 years FrederikHeber Some warning fixes. comparison signed/unsigned: - …
molecule_geometry.cpp 17.5 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
molecule.hpp 7.6 KB ​ 6bd7e0   13 years FrederikHeber Renamed old LinkedCell class to LinkedCell_deprecated. - this is …
molecule.cpp 40.4 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Makefile.am 12.5 KB ​ 7afb77   13 years FrederikHeber Added AtomsWithinDistanceOf descriptor. - this is basically just a …
IdPool_impl.hpp 3.9 KB ​ b6f5bc   13 years FrederikHeber FIX: Fixes to idpool implementation that did not initialize all its …
IdPool.hpp 2.5 KB ​ 3e4fb6   13 years FrederikHeber Added template class IdPool used by World to manage defragmentable id …
Formula.hpp 4.1 KB ​ e5c233   13 years FrederikHeber FIX: replaced boost/exception.hpp by boost/exception/all.hpp.
Formula.cpp 14.9 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
config.hpp 483 bytes ​ 41a467   13 years FrederikHeber LARGE: config class is now just a tiny container. - this was …
config.cpp 1.1 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
cleanUp.hpp 354 bytes ​ 567357   13 years FrederikHeber FIX: cleanUp() replaced by module_reinit() and .._exit() in …
cleanUp.cpp 4.4 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
builder_init.hpp 329 bytes ​ b5d38d   13 years FrederikHeber Moved dumpMemory() and saveAll() from module builder_init to cleanUp.
builder_init.cpp 3.9 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
builder.cpp 747 bytes ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
Box.hpp 3.9 KB ​ 99f4ee   13 years FrederikHeber Class Box is now also an Observable. - it has two channels to notify …
Box.cpp 10.1 KB ​ 0aa122   13 years FrederikHeber Updated all source files's copyright note to current year 2012.
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