source: src/vector.hpp@ 9f3b85

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 9f3b85 was 0c7ed8, checked in by Tillmann Crueger <crueger@…>, 15 years ago

Passed the internal gsl_vector structure from Vector to linearSystemOfEquations.

  • Property mode set to 100755
File size: 3.6 KB
RevLine 
[342f33f]1#ifndef VECTOR_HPP_
2#define VECTOR_HPP_
3
[357fba]4using namespace std;
5
[f66195]6/*********************************************** includes ***********************************/
7
8// include config.h
9#ifdef HAVE_CONFIG_H
10#include <config.h>
11#endif
[357fba]12
[c75de1]13#include <iostream>
[54a746]14#include <gsl/gsl_vector.h>
15#include <gsl/gsl_multimin.h>
16
[1bd79e]17#include <memory>
[45ef76]18#include <vector>
[1bd79e]19
[f66195]20#include "defs.hpp"
[1513a74]21#include "Space.hpp"
[f66195]22
23/********************************************** declarations *******************************/
[7d96c6]24
[45ef76]25class Vector;
26
27typedef std::vector<Vector> pointset;
28
[342f33f]29/** Single vector.
30 * basically, just a x[3] but with helpful functions
31 */
[1513a74]32class Vector : public Space{
[1bd79e]33public:
[6ac7ee]34
[042f82]35 Vector();
[fb73b8]36 Vector(const double x1, const double x2, const double x3);
[0a4f7f]37 Vector(const Vector& src);
[72e7fa]38 virtual ~Vector();
39
[1bd79e]40 // Method implemented by forwarding to the Representation
41
[753f02]42 double DistanceSquared(const Vector &y) const;
[d4c9ae]43 double DistanceToSpace(const Space& space) const;
[753f02]44 double PeriodicDistance(const Vector &y, const double * const cell_size) const;
45 double PeriodicDistanceSquared(const Vector &y, const double * const cell_size) const;
46 double ScalarProduct(const Vector &y) const;
47 double Angle(const Vector &y) const;
[54a746]48 bool IsZero() const;
49 bool IsOne() const;
[753f02]50 bool IsNormalTo(const Vector &normal) const;
51 bool IsEqualTo(const Vector &a) const;
52
53 void AddVector(const Vector &y);
54 void SubtractVector(const Vector &y);
55 void VectorProduct(const Vector &y);
56 void ProjectOntoPlane(const Vector &y);
57 void ProjectIt(const Vector &y);
58 Vector Projection(const Vector &y) const;
59 void ScaleAll(const double *factor);
[776b64]60 void Scale(const double factor);
61 void MatrixMultiplication(const double * const M);
[753f02]62 bool InverseMatrixMultiplication(const double * const M);
[e138de]63 void KeepPeriodic(const double * const matrix);
[753f02]64 bool GetOneNormalVector(const Vector &x1);
65 bool MakeNormalTo(const Vector &y1);
[776b64]66 bool IsInParallelepiped(const Vector &offset, const double * const parallelepiped) const;
67 void WrapPeriodically(const double * const M, const double * const Minv);
[45ef76]68 std::pair<Vector,Vector> partition(const Vector&) const;
69 std::pair<pointset,Vector> partition(const pointset&) const;
[2ededc2]70
[0a4f7f]71 // Accessors ussually come in pairs... and sometimes even more than that
[753f02]72 double& operator[](size_t i);
73 const double& operator[](size_t i) const;
[1bd79e]74 double& at(size_t i);
75 const double& at(size_t i) const;
[0a4f7f]76
77 // Assignment operator
[753f02]78 Vector &operator=(const Vector& src);
[0a4f7f]79
80 // Access to internal structure
[0c7ed8]81 gsl_vector* get();
[72e7fa]82
[1bd79e]83 // Methods that are derived directly from other methods
84 double Norm() const;
85 double NormSquared() const;
86 void Normalize();
87 void Zero();
88 void One(const double one);
89 void LinearCombinationOfVectors(const Vector &x1, const Vector &x2, const Vector &x3, const double * const factors);
90
[72e7fa]91 // operators for mathematical operations
92 bool operator==(const Vector& b) const;
[fa5a6a]93 bool operator!=(const Vector& b) const;
[72e7fa]94 const Vector& operator+=(const Vector& b);
95 const Vector& operator-=(const Vector& b);
96 Vector const operator+(const Vector& b) const;
97 Vector const operator-(const Vector& b) const;
[0a4f7f]98
[1513a74]99 // Methods inherited from Space
100 virtual double distance(const Vector &point) const;
101 virtual Vector getClosestPoint(const Vector &point) const;
102
[1bd79e]103protected:
104
[0a4f7f]105private:
[0c7ed8]106 gsl_vector *content;
[0a4f7f]107
[342f33f]108};
109
[005e18]110// some commonly used and fixed vectors
111const extern Vector zeroVec;
112const extern Vector e1;
113const extern Vector e2;
114const extern Vector e3;
115
[9c20aa]116ostream & operator << (ostream& ost, const Vector &m);
[b84d5d]117const Vector& operator*=(Vector& a, const double m);
118Vector const operator*(const Vector& a, const double m);
119Vector const operator*(const double m, const Vector& a);
[342f33f]120
121#endif /*VECTOR_HPP_*/
Note: See TracBrowser for help on using the repository browser.