source: src/unittests/atomsCalculationTest.cpp@ 13e3c3

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 13e3c3 was bf3817, checked in by Frederik Heber <heber@…>, 14 years ago

Added ifdef HAVE_CONFIG and config.h include to each and every cpp file.

  • is now topmost in front of MemDebug.hpp (and any other).
  • Property mode set to 100644
File size: 2.8 KB
Line 
1/*
2 * atomsCalculationTest.cpp
3 *
4 * Created on: Feb 19, 2010
5 * Author: crueger
6 */
7
8// include config.h
9#ifdef HAVE_CONFIG_H
10#include <config.h>
11#endif
12
13#include "atomsCalculationTest.hpp"
14
15#include <cppunit/CompilerOutputter.h>
16#include <cppunit/extensions/TestFactoryRegistry.h>
17#include <cppunit/ui/text/TestRunner.h>
18#include <iostream>
19#include <boost/bind.hpp>
20
21#include "Descriptors/AtomDescriptor.hpp"
22#include "Descriptors/AtomIdDescriptor.hpp"
23#include "Actions/AtomsCalculation.hpp"
24#include "Actions/AtomsCalculation_impl.hpp"
25#include "Actions/ActionRegistry.hpp"
26
27#include "World.hpp"
28#include "World_calculations.hpp"
29#include "atom.hpp"
30
31#ifdef HAVE_TESTRUNNER
32#include "UnitTestMain.hpp"
33#endif /*HAVE_TESTRUNNER*/
34
35// Registers the fixture into the 'registry'
36CPPUNIT_TEST_SUITE_REGISTRATION( atomsCalculationTest );
37
38// set up and tear down
39void atomsCalculationTest::setUp(){
40 World::getInstance();
41 for(int i=0;i<ATOM_COUNT;++i){
42 atoms[i]= World::getInstance().createAtom();
43 atomIds[i]= atoms[i]->getId();
44 }
45}
46void atomsCalculationTest::tearDown(){
47 World::purgeInstance();
48 ActionRegistry::purgeInstance();
49}
50
51// some helper functions
52static bool hasAllIds(std::vector<atomId_t> atoms,atomId_t ids[ATOM_COUNT], std::set<atomId_t> excluded = std::set<atomId_t>()){
53 for(int i=0;i<ATOM_COUNT;++i){
54 atomId_t id = ids[i];
55 if(!excluded.count(id)){
56 std::vector<atomId_t>::iterator iter;
57 bool res=false;
58 for(iter=atoms.begin();iter!=atoms.end();++iter){
59 res |= (*iter) == id;
60 }
61 if(!res) {
62 cout << "Atom " << id << " missing in returned list" << endl;
63 return false;
64 }
65 }
66 }
67 return true;
68}
69
70static bool hasNoDuplicates(std::vector<atomId_t> ids){
71 std::set<atomId_t> found;
72 std::vector<atomId_t>::iterator iter;
73 for(iter=ids.begin();iter!=ids.end();++iter){
74 int id = (*iter);
75 if(found.count(id))
76 return false;
77 found.insert(id);
78 }
79 return true;
80}
81
82void atomsCalculationTest::testCalculateSimple(){
83 AtomsCalculation<atomId_t> *calc = World::getInstance().calcOnAtoms<atomId_t>(boost::bind(&atom::getId,_1),"FOO",AllAtoms());
84 std::vector<atomId_t> allIds = (*calc)();
85 CPPUNIT_ASSERT(hasAllIds(allIds,atomIds));
86 CPPUNIT_ASSERT(hasNoDuplicates(allIds));
87}
88
89void atomsCalculationTest::testCalculateExcluded(){
90 atomId_t excluded = atomIds[ATOM_COUNT/2];
91 AtomsCalculation<atomId_t> *calc = World::getInstance().calcOnAtoms<atomId_t>(boost::bind(&atom::getId,_1),"FOO",AllAtoms() && !AtomById(excluded));
92 std::vector<atomId_t> allIds = (*calc)();
93 std::set<atomId_t> excluded_set;
94 excluded_set.insert(excluded);
95 CPPUNIT_ASSERT(hasAllIds(allIds,atomIds,excluded_set));
96 CPPUNIT_ASSERT(hasNoDuplicates(allIds));
97 CPPUNIT_ASSERT_EQUAL((size_t)(ATOM_COUNT-1),allIds.size());
98}
Note: See TracBrowser for help on using the repository browser.