Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
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        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
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        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
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        Subpackage_levmar
        Subpackage_mpqc_open
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        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | Last change
 on this file since d893f79 was             5f612ee, checked in by Frederik Heber <heber@…>, 16 years ago | 
        
          | 
Merge branch 'Analysis_PairCorrelation' into StructureRefactoring
 
Conflicts:
 
molecuilder/src/Makefile.ammolecuilder/src/World.cpp
 molecuilder/src/World.hpp
 molecuilder/src/boundary.cpp
 molecuilder/src/builder.cpp
 molecuilder/src/log.cpp
 molecuilder/src/moleculelist.cpp
 molecuilder/src/periodentafel.cpp
 molecuilder/src/tesselation.cpp
 molecuilder/src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp
 molecuilder/src/unittests/Makefile.am
 molecuilder/src/unittests/bondgraphunittest.cpp
 molecuilder/src/unittests/gslvectorunittest.cpp
 molecuilder/src/unittests/logunittest.cpp
 molecuilder/src/unittests/tesselation_boundarytriangleunittest.hpp
 molecuilder/src/vector.cpp
 molecuilder/tests/Tesselations/defs.in
 
 
Conflicts have been many and too numerous to listen here, just the few general cases
 new molecule() replaced by World::getInstance().createMolecule()
new atom() replaced by World::getInstance().createAtom() where appropriate.
Some DoLog()s added interfered with changes to the message produced by Log() << Verbose(.) << ...
DoLog() has been erroneously added to TestRunner.cpp as well, there cout is appropriate
...
 
Additionally, there was a bug in atom::clone(), sort was set to atom::nr of the atom to clone not of the clone itself. This caused a failure of the fragmentation.
 
This merge has been fully checked from a clean build directory with subsequent configure,make all install and make check.It configures, compiles and runs all test cases and the test suite without errors.
 
 
Signed-off-by: Frederik Heber <heber@…>
 | 
        
          | 
              
Property                 mode
 set to                 100644 | 
        
          | File size:
            1.4 KB | 
      
      
| Line |  | 
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| 1 | /* | 
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| 2 | * log.cpp | 
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| 3 | * | 
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| 4 | *  Created on: Oct 19, 2009 | 
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| 5 | *      Author: metzler | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | #include "logger.hpp" | 
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| 9 | #include "errorlogger.hpp" | 
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| 10 |  | 
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| 11 | /** | 
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| 12 | * Sets verbosity for the error logger and the standard logger. | 
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| 13 | * | 
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| 14 | * \param int verbosity level | 
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| 15 | */ | 
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| 16 | void setVerbosity(int verbosityLevel) { | 
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| 17 | logger::getInstance().setVerbosity(verbosityLevel); | 
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| 18 | } | 
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| 19 |  | 
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| 20 | /** | 
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| 21 | * Prints a log entry. | 
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| 22 | * | 
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| 23 | * \param indentation level of the message to log | 
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| 24 | */ | 
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| 25 | class logger& Log() { | 
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| 26 | return logger::getInstance(); | 
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| 27 | } | 
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| 28 |  | 
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| 29 | /** Checks verbosity for logger. | 
|---|
| 30 | * Is supposed to be used in construct as this: | 
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| 31 | * DoLog(2) && (Log() << Verbose(2) << "message." << endl); | 
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| 32 | * If DoLog does not return true, the right-hand side is not evaluated and we save some time. | 
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| 33 | * \param verbose verbosity level of this message | 
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| 34 | * \return true - print, false - don't | 
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| 35 | */ | 
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| 36 | bool DoLog(int verbose) { | 
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| 37 | return (verbose <= logger::getInstance().verbosity); | 
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| 38 | } | 
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| 39 |  | 
|---|
| 40 | /** Checks verbosity for errorlogger. | 
|---|
| 41 | * Is supposed to be used in construct as this: | 
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| 42 | * DoLog(2) && (Log() << Verbose(2) << "message." << endl); | 
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| 43 | * If DoLog does not return true, the right-hand side is not evaluated and we save some time. | 
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| 44 | * \param verbose verbosity level of this message | 
|---|
| 45 | * \return true - print, false - don't | 
|---|
| 46 | */ | 
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| 47 | bool DoeLog(int verbose) { | 
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| 48 | return (verbose <= errorLogger::getInstance().verbosity); | 
|---|
| 49 | } | 
|---|
| 50 |  | 
|---|
| 51 | /** | 
|---|
| 52 | * Prints an error log entry. | 
|---|
| 53 | * | 
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| 54 | * \param indentation level of the message to log | 
|---|
| 55 | */ | 
|---|
| 56 | class errorLogger & eLog() { | 
|---|
| 57 | return errorLogger::getInstance(); | 
|---|
| 58 | } | 
|---|
       
      
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