Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since 357fba was 357fba, checked in by Frederik Heber <heber@…>, 15 years ago |
Huge refactoring of Tesselation routines, but not finished yet.
- new file tesselation.cpp with all of classes tesselation, Boundary..Set and CandidatesForTesselationOB
- new file tesselationhelper.cpp with all auxiliary functions.
- boundary.cpp just contains super functions, combininb molecule and Tesselation pointers
- new pointer molecule::TesselStruct
- PointMap, LineMap, TriangleMap DistanceMap have been moved from molecules.hpp to tesselation.hpp
- new abstract class PointCloud and TesselPoint
- atom inherits TesselPoint
- molecule inherits PointCloud (i.e. a set of TesselPoints) and implements all virtual functions for the chained list
- TriangleFilesWritten is thrown out, intermediate steps are written in find_nonconvex_border and not in find_next_triangle()
- LinkedCell class uses TesselPoint as its nodes, i.e. as long as any class inherits TesselPoint, it may make use of LinkedCell as well and a PointCloud is used to initialize
- class atom and bond definitions have been moved to own header files
NOTE: This is not bugfree yet. Tesselation of heptan produces way too many triangles, but runs without faults or leaks.
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Property mode
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100644
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File size:
1.4 KB
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1 | /*
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2 | * linkedcell.hpp
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3 | *
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4 | * If the linked cell should be usable, the class has to inherit LCNodeSet and the nodes (containing the Vectors) have to inherit LCNode. This works well
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5 | * for molecule and atom classes.
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6 | *
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7 | * Created on: Aug 3, 2009
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8 | * Author: heber
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9 | */
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10 |
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11 | #ifndef LINKEDCELL_HPP_
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12 | #define LINKEDCELL_HPP_
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13 |
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14 | using namespace std;
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15 |
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16 | // include config.h
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17 | #ifdef HAVE_CONFIG_H
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18 | #include <config.h>
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19 | #endif
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20 |
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21 | #include <list>
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22 |
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23 | #include "defs.hpp"
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24 | #include "helpers.hpp"
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25 | #include "vector.hpp"
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26 |
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27 | class TesselPoint;
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28 | class PointCloud;
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29 |
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30 | #define LinkedNodes list<TesselPoint *>
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31 |
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32 | /** Linked Cell class for containing Vectors in real space efficiently.
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33 | */
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34 | class LinkedCell {
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35 | public:
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36 | Vector max; // upper boundary
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37 | Vector min; // lower boundary
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38 | LinkedNodes *LC; // linked cell list
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39 | double RADIUS; // cell edge length
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40 | int N[NDIM]; // number of cells per axis
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41 | int n[NDIM]; // temporary variable for current cell per axis
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42 | int index; // temporary index variable , access by index = n[0] * N[1] * N[2] + n[1] * N[2] + n[2];
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43 |
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44 | LinkedCell();
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45 | LinkedCell(PointCloud *set, double RADIUS);
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46 | ~LinkedCell();
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47 | LinkedNodes* GetCurrentCell();
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48 | bool SetIndexToNode(TesselPoint *Walker);
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49 | bool SetIndexToVector(Vector *x);
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50 | bool CheckBounds();
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51 |
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52 | // not implemented yet
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53 | bool AddNode(Vector *Walker);
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54 | bool DeleteNode(Vector *Walker);
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55 | bool MoveNode(Vector *Walker);
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56 | };
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57 |
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58 | #endif /*LINKEDCELL_HPP_*/
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