Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since d4fa23 was d067d45, checked in by Frederik Heber <heber@…>, 15 years ago |
Merge branch 'MultipleMolecules'
Conflicts:
molecuilder/src/analyzer.cpp
molecuilder/src/atom.cpp
molecuilder/src/boundary.cpp
molecuilder/src/boundary.hpp
molecuilder/src/builder.cpp
molecuilder/src/config.cpp
molecuilder/src/datacreator.hpp
molecuilder/src/helpers.cpp
molecuilder/src/joiner.cpp
molecuilder/src/moleculelist.cpp
molecuilder/src/molecules.cpp
molecuilder/src/molecules.hpp
molecuilder/src/parser.cpp
molecuilder/src/parser.hpp
molecuilder/src/vector.cpp
molecuilder/src/verbose.cpp
merges:
- analyzer.cpp: all from HEAD, Hessian stuff
- atom.cpp: ostream & operator << (ostream &ost, const atom &a), 2nd param is const
- boundary.cpp: DoSingleStepOutput, VRMLSUffix, HULLEPSILON, Get_center_of_sphere(), Find_next_suitable_point_via_Angle_of_Sphere() and all of tesselation stuff from MultipleMolecules; DoRaster3DOutput, ~BoundaryLineSet(), ~Tesselation() from HEAD; write_raster3d_file with some changes from MultipleMolecules
- boundary.hpp: all from MultipleMolecules
- builder.cpp: all in ParseCommandLineOptions() from MultipleMolecules
- config.cpp: all from HEAD, is stuff from ThermoStat and ConstrainedMD
- datacreator.hpp: all from HEAD, Hessian stuff
- helpers.cpp: all from HEAD, ReAlloc() differed just by indentation
- moleculelist.cpp: all from MultipleMolecules, has to do with introduced molecule centers
- molecules.cpp: all from HEAD, was ConstrainedMD stuff
- molecules.hpp: ConstrainedMD and VerletForceIntegration from HEAD, moleculelist stuff from MultipleMolecules
- parser.cpp: all from HEAD, ColumnCounter is *ColumnCounter there
- parser.hpp: all from HEAD
- vector.cpp: completely from MultipleMolecules (more lines)
- verbose.cpp: all from HEAD
compilation fixes:
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set to
100755
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File size:
883 bytes
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1 | /** \file graph.cpp
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2 | *
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3 | * Function implementations for the class graph.
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4 | *
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5 | */
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6 |
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7 | using namespace std;
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8 |
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9 | #include "graph.hpp"
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10 |
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11 | /***************************************** Implementations for graph classes ********************************/
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12 |
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13 | /** Constructor of class Graph.
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14 | */
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15 | Graph::Graph()
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16 | {
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17 | };
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18 |
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19 | /** Destructor of class Graph.
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20 | * Destructor does release memory for nodes and edges contained in its lists as well.
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21 | */
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22 | Graph::~Graph()
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23 | {
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24 | };
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25 |
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26 | /** Constructor of class SubGraph.
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27 | */
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28 | SubGraph::SubGraph()
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29 | {
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30 | };
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31 |
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32 | /** Destructor of class SubGraph.
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33 | * Note that destructor does not deallocate either nodes or edges! (this is done by its subgraph!)
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34 | */
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35 | SubGraph::~SubGraph()
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36 | {
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37 | };
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38 |
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39 | /** Constructor of class Node.
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40 | */
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41 | Node::Node()
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42 | {
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43 | };
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44 |
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45 | /** Destructor of class Node.
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46 | */
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47 | Node::~Node()
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48 | {
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49 | };
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50 |
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51 | /** Constructor of class Edge.
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52 | */
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53 | Edge::Edge()
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54 | {
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55 | };
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56 |
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57 | /** Destructor of class Edge.
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58 | */
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59 | Edge::~Edge()
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60 | {
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61 | };
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62 |
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