1 | /*
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2 | * element.hpp
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3 | *
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4 | * Created on: Aug 3, 2009
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5 | * Author: heber
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6 | */
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7 |
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8 | #ifndef ELEMENT_HPP_
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9 | #define ELEMENT_HPP_
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10 |
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11 | /*********************************************** includes ***********************************/
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12 |
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13 | // include config.h
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14 | #ifdef HAVE_CONFIG_H
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15 | #include <config.h>
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16 | #endif
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17 |
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18 | #include <iosfwd>
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19 | #include <string>
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20 |
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21 | #include "defs.hpp"
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22 | #include "types.hpp"
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23 |
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24 | /********************************************** declarations *******************************/
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25 |
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26 | /** Chemical element.
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27 | * Class incorporates data for a certain chemical element to be referenced from atom class.
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28 | */
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29 | class element {
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30 | public:
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31 | double mass; //!< mass in g/mol
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32 | double CovalentRadius; //!< covalent radius
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33 | double VanDerWaalsRadius; //!< can-der-Waals radius
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34 | int Z; //!< atomic number
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35 | char name[64]; //!< atom name, i.e. "Hydrogren"
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36 | char symbol[3]; //!< short form of the atom, i.e. "H"
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37 | char period[8]; //!< period: n quantum number
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38 | char group[8]; //!< group: l quantum number
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39 | char block[8]; //!< block: l quantum number
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40 | double Valence; //!< number of valence electrons for this element
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41 | int NoValenceOrbitals; //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix()
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42 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen (for single, double and triple bonds)
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43 | double HBondAngle[NDIM]; //!< typical angle for one, two, three bonded hydrogen (in degrees)
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44 |
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45 | element();
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46 | ~element();
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47 |
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48 | // accessor functions
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49 | atomicNumber_t getNumber() const;
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50 | std::string getSymbol() const;
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51 | void setSymbol(const std::string&);
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52 | std::string getName() const;
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53 | void setName(const std::string&);
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54 |
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55 | //> print element entries to screen
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56 | bool Output(std::ostream * const out) const;
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57 | bool Checkout(std::ostream * const out, const int No, const int NoOfAtoms) const;
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58 |
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59 | private:
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60 | };
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61 |
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62 | std::ostream &operator<<(std::ostream&,const element&);
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63 |
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64 | #endif /* ELEMENT_HPP_ */
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