Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since e95a59 was             e95a59, checked in by Tillmann Crueger <crueger@…>, 15 years ago           | 
        
        
          | 
             
Added a method that allows querying the momentum of a particle 
 
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            File size:
            1.7 KB
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| Rev | Line |   | 
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| [6b919f8] | 1 | /*
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 | 2 |  * atom_trajectoryparticle.hpp
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 | 3 |  *
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 | 4 |  *  Created on: Oct 19, 2009
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
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 | 8 | #ifndef ATOM_TRAJECTORYPARTICLE_HPP_
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 | 9 | #define ATOM_TRAJECTORYPARTICLE_HPP_
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 | 10 | 
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 | 11 | using namespace std;
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 | 12 | 
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 | 13 | /*********************************************** includes ***********************************/
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 | 14 | 
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 | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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 | 20 | #include <fstream>
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 | 21 | 
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 | 22 | #include <gsl/gsl_randist.h>
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 | 23 | 
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 | 24 | #include "atom_atominfo.hpp"
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 | 25 | #include "atom_particleinfo.hpp"
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 | 26 | #include "atom_trajectoryparticleinfo.hpp"
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 | 27 | 
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 | 28 | /****************************************** forward declarations *****************************/
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 | 29 | 
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 | 30 | class atom;
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 | 31 | class config;
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 | 32 | class ForceMatrix;
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 | 33 | class Vector;
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 | 34 | 
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 | 35 | /********************************************** declarations *******************************/
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 | 36 | 
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 | 37 | 
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 | 38 | class TrajectoryParticle :  public TrajectoryParticleInfo, public virtual AtomInfo, public virtual ParticleInfo {
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 | 39 | public:
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 | 40 | 
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 | 41 |   TrajectoryParticle();
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 | 42 |   virtual ~TrajectoryParticle();
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 | 43 | 
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 | 44 |   // constraint potential and dynamics stuff
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| [b453f9] | 45 |   void EvaluateConstrainedForce(int startstep, int endstep, atom **PermutationMap, ForceMatrix *Force) const;
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| [6b919f8] | 46 |   void CorrectVelocity(double *ActualTemp, int Step, Vector *CoGVelocity);
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 | 47 | 
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 | 48 |   // trajectory stuff
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 | 49 |   void ResizeTrajectory(int MaxSteps);
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 | 50 |   void CopyStepOnStep(int dest, int src);
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| [ef7d30] | 51 |   void VelocityVerletUpdate(int MDSteps, config *configuration, ForceMatrix *Force, const size_t offset);
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| [b453f9] | 52 |   void SumUpKineticEnergy( int Step, double *TotalMass, Vector *TotalVelocity ) const;
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| [7329c3] | 53 |   double getKineticEnergy(unsigned int step) const;
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| [e95a59] | 54 |   Vector getMomentum(unsigned int step) const;
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| [6b919f8] | 55 | 
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| [d74077] | 56 |   std::ostream & operator << (std::ostream &ost) const;
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| [6b919f8] | 57 | 
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| [d74077] | 58 | private:
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| [6b919f8] | 59 | };
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 | 60 | 
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| [d74077] | 61 | ostream & operator << (ostream &ost, const TrajectoryParticle &a);
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| [6b919f8] | 62 | 
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 | 63 | #endif /* ATOM_TRAJECTORYPARTICLE_HPP_ */
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