Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since f1ef60a was e138de, checked in by Frederik Heber <heber@…>, 15 years ago |
Huge change from ofstream * (const) out --> Log().
- first shift was done via regular expressions
- then via error messages from the code
- note that class atom, class element and class molecule kept in parts their output stream, was they print to file.
- make check runs fine
- MISSING: Verbosity is not fixed for everything (i.e. if no endl; is present and next has Verbose(0) ...)
Signed-off-by: Frederik Heber <heber@…>
|
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Property mode
set to
100644
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File size:
1.0 KB
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Rev | Line | |
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[6b919f8] | 1 | /*
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| 2 | * atom_graphnode.cpp
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| 3 | *
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| 4 | * Created on: Oct 19, 2009
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| 5 | * Author: heber
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| 6 | */
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| 7 |
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| 8 | #include "atom_graphnode.hpp"
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[e138de] | 9 | #include "log.hpp"
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[6b919f8] | 10 | #include "verbose.hpp"
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| 11 |
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| 12 | /** Constructor of class GraphNode.
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| 13 | */
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| 14 | GraphNode::GraphNode()
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| 15 | {
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| 16 | };
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| 17 |
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| 18 | /** Destructor of class GraphNode.
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| 19 | */
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| 20 | GraphNode::~GraphNode()
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| 21 | {
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| 22 | };
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| 23 |
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| 24 | /** Output graph info of this atom.
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| 25 | * \param *out output stream
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| 26 | */
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[e138de] | 27 | void GraphNode::OutputGraphInfo() const
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[6b919f8] | 28 | {
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[e138de] | 29 | Log() << Verbose(2) << "Atom " << Name << " is " << ((SeparationVertex) ? "a" : "not a") << " separation vertex, components are ";
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| 30 | OutputComponentNumber();
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| 31 | Log() << Verbose(0) << " with Lowpoint " << LowpointNr << " and Graph Nr. " << GraphNr << "." << endl;
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[6b919f8] | 32 | };
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| 33 |
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| 34 | /** Output a list of flags, stating whether the bond was visited or not.
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| 35 | * Note, we make use of the last entry of the ComponentNr always being -1 if allocated.
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| 36 | * \param *out output stream for debugging
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| 37 | */
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[e138de] | 38 | void GraphNode::OutputComponentNumber() const
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[6b919f8] | 39 | {
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| 40 | if (ComponentNr != NULL) {
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| 41 | for (int i=0; ComponentNr[i] != -1; i++)
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[e138de] | 42 | Log() << Verbose(0) << ComponentNr[i] << " ";
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[6b919f8] | 43 | }
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| 44 | };
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| 45 |
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