1 | /*
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2 | * CommandLineDialog.cpp
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3 | *
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4 | * Created on: May 8, 2010
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5 | * Author: heber
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6 | */
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7 |
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8 | // include config.h
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9 | #ifdef HAVE_CONFIG_H
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10 | #include <config.h>
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11 | #endif
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12 |
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13 | #include "Helpers/MemDebug.hpp"
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14 |
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15 | #include <iostream>
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16 | #include <vector>
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17 |
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18 | #include <Descriptors/AtomDescriptor.hpp>
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19 | #include <Descriptors/AtomIdDescriptor.hpp>
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20 | #include <Descriptors/MoleculeDescriptor.hpp>
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21 | #include <Descriptors/MoleculeIdDescriptor.hpp>
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22 | #include "CommandLineUI/CommandLineDialog.hpp"
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23 |
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24 | #include "Actions/Values.hpp"
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25 |
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26 | #include "element.hpp"
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27 | #include "periodentafel.hpp"
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28 | #include "CommandLineParser.hpp"
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29 | #include "defs.hpp"
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30 | #include "Helpers/Log.hpp"
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31 | #include "LinearAlgebra/Matrix.hpp"
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32 | #include "periodentafel.hpp"
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33 | #include "Helpers/Verbose.hpp"
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34 | #include "World.hpp"
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35 | #include "Box.hpp"
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36 |
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37 | #include "atom.hpp"
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38 | #include "element.hpp"
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39 | #include "molecule.hpp"
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40 | #include "LinearAlgebra/Vector.hpp"
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41 |
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42 | using namespace std;
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43 |
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44 |
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45 | CommandLineDialog::CommandLineDialog()
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46 | {
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47 | }
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48 |
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49 | CommandLineDialog::~CommandLineDialog()
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50 | {
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51 | }
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52 |
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53 |
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54 | void CommandLineDialog::queryEmpty(const char* title, string _description){
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55 | registerQuery(new EmptyCommandLineQuery(title, _description));
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56 | }
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57 |
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58 | void CommandLineDialog::queryInt(const char* title, string _description){
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59 | registerQuery(new IntCommandLineQuery(title, _description));
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60 | }
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61 |
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62 | void CommandLineDialog::queryInts(const char* title, string _description){
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63 | registerQuery(new IntsCommandLineQuery(title, _description));
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64 | }
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65 |
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66 | void CommandLineDialog::queryBoolean(const char* title, string _description){
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67 | registerQuery(new BooleanCommandLineQuery(title, _description));
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68 | }
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69 |
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70 | void CommandLineDialog::queryDouble(const char* title, string _description){
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71 | registerQuery(new DoubleCommandLineQuery(title, _description));
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72 | }
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73 |
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74 | void CommandLineDialog::queryDoubles(const char* title, string _description){
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75 | registerQuery(new DoublesCommandLineQuery(title, _description));
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76 | }
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77 |
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78 | void CommandLineDialog::queryString(const char* title, string _description){
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79 | registerQuery(new StringCommandLineQuery(title, _description));
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80 | }
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81 |
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82 | void CommandLineDialog::queryStrings(const char* title, string _description){
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83 | registerQuery(new StringsCommandLineQuery(title, _description));
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84 | }
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85 |
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86 | void CommandLineDialog::queryAtom(const char* title, string _description) {
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87 | registerQuery(new AtomCommandLineQuery(title, _description));
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88 | }
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89 |
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90 | void CommandLineDialog::queryAtoms(const char* title, string _description) {
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91 | registerQuery(new AtomsCommandLineQuery(title, _description));
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92 | }
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93 |
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94 | void CommandLineDialog::queryMolecule(const char* title, string _description) {
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95 | registerQuery(new MoleculeCommandLineQuery(title, _description));
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96 | }
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97 |
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98 | void CommandLineDialog::queryMolecules(const char* title, string _description) {
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99 | registerQuery(new MoleculesCommandLineQuery(title, _description));
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100 | }
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101 |
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102 | void CommandLineDialog::queryVector(const char* title, bool check, string _description) {
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103 | registerQuery(new VectorCommandLineQuery(title,check, _description));
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104 | }
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105 |
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106 | void CommandLineDialog::queryVectors(const char* title, bool check, string _description) {
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107 | registerQuery(new VectorsCommandLineQuery(title,check, _description));
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108 | }
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109 |
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110 | void CommandLineDialog::queryBox(const char* title, string _description) {
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111 | registerQuery(new BoxCommandLineQuery(title,_description));
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112 | }
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113 |
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114 | void CommandLineDialog::queryElement(const char* title, string _description){
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115 | registerQuery(new ElementCommandLineQuery(title, _description));
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116 | }
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117 |
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118 | void CommandLineDialog::queryElements(const char* title, string _description){
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119 | registerQuery(new ElementsCommandLineQuery(title, _description));
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120 | }
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121 |
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122 | /************************** Query Infrastructure ************************/
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123 |
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124 | CommandLineDialog::EmptyCommandLineQuery::EmptyCommandLineQuery(string title, string _description) :
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125 | Dialog::EmptyQuery(title, _description)
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126 | {}
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127 |
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128 | CommandLineDialog::EmptyCommandLineQuery::~EmptyCommandLineQuery() {}
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129 |
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130 | bool CommandLineDialog::EmptyCommandLineQuery::handle() {
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131 | cout << "Message of " << getTitle() << ":\n" << getDescription() << "\n";
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132 | return true;
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133 | }
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134 |
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135 | CommandLineDialog::IntCommandLineQuery::IntCommandLineQuery(string title, string _description) :
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136 | Dialog::IntQuery(title, _description)
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137 | {}
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138 |
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139 | CommandLineDialog::IntCommandLineQuery::~IntCommandLineQuery() {}
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140 |
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141 | bool CommandLineDialog::IntCommandLineQuery::handle() {
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142 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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143 | tmp = CommandLineParser::getInstance().vm[getTitle()].as<int>();
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144 | return true;
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145 | } else {
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146 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing integer for " << getTitle() << "." << endl);
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147 | return false;
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148 | }
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149 | }
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150 |
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151 | CommandLineDialog::IntsCommandLineQuery::IntsCommandLineQuery(string title, string _description) :
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152 | Dialog::IntsQuery(title, _description)
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153 | {}
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154 |
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155 | CommandLineDialog::IntsCommandLineQuery::~IntsCommandLineQuery() {}
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156 |
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157 | bool CommandLineDialog::IntsCommandLineQuery::handle() {
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158 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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159 | tmp = CommandLineParser::getInstance().vm[getTitle()].as< std::vector<int> >();
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160 | return true;
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161 | } else {
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162 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing integers for " << getTitle() << "." << endl);
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163 | return false;
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164 | }
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165 | }
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166 |
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167 | CommandLineDialog::BooleanCommandLineQuery::BooleanCommandLineQuery(string title, string _description) :
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168 | Dialog::BooleanQuery(title, _description)
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169 | {}
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170 |
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171 | CommandLineDialog::BooleanCommandLineQuery::~BooleanCommandLineQuery() {}
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172 |
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173 | bool CommandLineDialog::BooleanCommandLineQuery::handle() {
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174 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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175 | tmp = CommandLineParser::getInstance().vm[getTitle()].as<bool>();
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176 | return true;
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177 | } else {
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178 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing boolean for " << getTitle() << "." << endl);
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179 | return false;
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180 | }
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181 | }
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182 |
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183 | CommandLineDialog::StringCommandLineQuery::StringCommandLineQuery(string title, string _description) :
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184 | Dialog::StringQuery(title, _description)
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185 | {}
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186 |
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187 | CommandLineDialog::StringCommandLineQuery::~StringCommandLineQuery() {}
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188 |
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189 | bool CommandLineDialog::StringCommandLineQuery::handle() {
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190 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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191 | tmp = CommandLineParser::getInstance().vm[getTitle()].as<string>();
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192 | return true;
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193 | } else {
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194 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing string for " << getTitle() << "." << endl);
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195 | return false;
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196 | }
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197 | }
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198 |
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199 | CommandLineDialog::StringsCommandLineQuery::StringsCommandLineQuery(string title, string _description) :
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200 | Dialog::StringsQuery(title, _description)
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201 | {}
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202 |
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203 | CommandLineDialog::StringsCommandLineQuery::~StringsCommandLineQuery() {}
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204 |
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205 | bool CommandLineDialog::StringsCommandLineQuery::handle() {
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206 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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207 | tmp = CommandLineParser::getInstance().vm[getTitle()].as< vector<string> >();
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208 | return true;
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209 | } else {
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210 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing strings for " << getTitle() << "." << endl);
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211 | return false;
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212 | }
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213 | }
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214 |
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215 | CommandLineDialog::DoubleCommandLineQuery::DoubleCommandLineQuery(string title, string _description) :
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216 | Dialog::DoubleQuery(title, _description)
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217 | {}
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218 |
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219 | CommandLineDialog::DoubleCommandLineQuery::~DoubleCommandLineQuery() {}
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220 |
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221 | bool CommandLineDialog::DoubleCommandLineQuery::handle() {
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222 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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223 | tmp = CommandLineParser::getInstance().vm[getTitle()].as<double>();
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224 | return true;
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225 | } else {
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226 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing double for " << getTitle() << "." << endl);
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227 | return false;
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228 | }
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229 | }
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230 |
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231 | CommandLineDialog::DoublesCommandLineQuery::DoublesCommandLineQuery(string title, string _description) :
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232 | Dialog::DoublesQuery(title, _description)
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233 | {}
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234 |
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235 | CommandLineDialog::DoublesCommandLineQuery::~DoublesCommandLineQuery() {}
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236 |
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237 | bool CommandLineDialog::DoublesCommandLineQuery::handle() {
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238 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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239 | tmp = CommandLineParser::getInstance().vm[getTitle()].as< std::vector<double> >();
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240 | return true;
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241 | } else {
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242 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing doubles for " << getTitle() << "." << endl);
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243 | return false;
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244 | }
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245 | }
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246 |
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247 | CommandLineDialog::AtomCommandLineQuery::AtomCommandLineQuery(string title, string _description) :
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248 | Dialog::AtomQuery(title, _description)
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249 | {}
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250 |
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251 | CommandLineDialog::AtomCommandLineQuery::~AtomCommandLineQuery() {}
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252 |
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253 | bool CommandLineDialog::AtomCommandLineQuery::handle() {
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254 | int IdxOfAtom = -1;
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255 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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256 | IdxOfAtom = CommandLineParser::getInstance().vm[getTitle()].as<int>();
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257 | tmp = World::getInstance().getAtom(AtomById(IdxOfAtom));
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258 | return true;
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259 | } else {
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260 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing atom for " << getTitle() << "." << endl);
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261 | return false;
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262 | }
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263 | }
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264 |
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265 | CommandLineDialog::AtomsCommandLineQuery::AtomsCommandLineQuery(string title, string _description) :
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266 | Dialog::AtomsQuery(title, _description)
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267 | {}
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268 |
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269 | CommandLineDialog::AtomsCommandLineQuery::~AtomsCommandLineQuery() {}
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270 |
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271 | bool CommandLineDialog::AtomsCommandLineQuery::handle() {
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272 | std::vector<int> IdxOfAtom;
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273 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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274 | IdxOfAtom = CommandLineParser::getInstance().vm[getTitle()].as< std::vector<int> >();
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275 | for (std::vector<int>::iterator iter = IdxOfAtom.begin(); iter != IdxOfAtom.end(); ++iter) {
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276 | temp = World::getInstance().getAtom(AtomById(*iter));
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277 | if (temp)
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278 | tmp.push_back(temp);
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279 | }
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280 | return true;
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281 | } else {
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282 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing atoms for " << getTitle() << "." << endl);
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283 | return false;
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284 | }
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285 | }
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286 |
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287 | CommandLineDialog::MoleculeCommandLineQuery::MoleculeCommandLineQuery(string title, string _description) :
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288 | Dialog::MoleculeQuery(title, _description)
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289 | {}
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290 |
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291 | CommandLineDialog::MoleculeCommandLineQuery::~MoleculeCommandLineQuery() {}
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292 |
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293 | bool CommandLineDialog::MoleculeCommandLineQuery::handle() {
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294 | int IdxOfMol = -1;
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295 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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296 | IdxOfMol = CommandLineParser::getInstance().vm[getTitle()].as<int>();
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297 | tmp = World::getInstance().getMolecule(MoleculeById(IdxOfMol));
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298 | return true;
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299 | } else {
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300 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing molecule for " << getTitle() << "." << endl);
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301 | return false;
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302 | }
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303 | }
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304 |
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305 | CommandLineDialog::MoleculesCommandLineQuery::MoleculesCommandLineQuery(string title, string _description) :
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306 | Dialog::MoleculesQuery(title, _description)
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307 | {}
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308 |
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309 | CommandLineDialog::MoleculesCommandLineQuery::~MoleculesCommandLineQuery() {}
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310 |
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311 | bool CommandLineDialog::MoleculesCommandLineQuery::handle() {
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312 | std::vector<int> IdxOfMol;
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313 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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314 | IdxOfMol = CommandLineParser::getInstance().vm[getTitle()].as< std::vector<int> >();
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315 | for (std::vector<int>::iterator iter = IdxOfMol.begin(); iter != IdxOfMol.end(); ++iter) {
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316 | temp = World::getInstance().getMolecule(MoleculeById(*iter));
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317 | if (temp)
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318 | tmp.push_back(temp);
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319 | }
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320 | return true;
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321 | } else {
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322 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing molecules for " << getTitle() << "." << endl);
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323 | return false;
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324 | }
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325 | }
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326 |
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327 | CommandLineDialog::VectorCommandLineQuery::VectorCommandLineQuery(string title, bool _check, string _description) :
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328 | Dialog::VectorQuery(title,_check, _description)
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329 | {}
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330 |
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331 | CommandLineDialog::VectorCommandLineQuery::~VectorCommandLineQuery()
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332 | {}
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333 |
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334 | bool CommandLineDialog::VectorCommandLineQuery::handle() {
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335 | VectorValue temp;
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336 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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337 | temp = CommandLineParser::getInstance().vm[getTitle()].as< VectorValue >();
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338 | tmp[0] = temp.x;
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339 | tmp[1] = temp.y;
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340 | tmp[2] = temp.z;
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341 | if ((check) && (!World::getInstance().getDomain().isInside(tmp))) {
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342 | DoeLog(1) && (eLog() << Verbose(1) << "Vector " << tmp << " would be outside of box domain." << endl);
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343 | return false;
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344 | }
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345 | return true;
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346 | } else {
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347 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing vector for " << getTitle() << "." << endl);
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348 | return false;
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349 | }
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350 | }
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351 |
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352 | CommandLineDialog::VectorsCommandLineQuery::VectorsCommandLineQuery(string title, bool _check, string _description) :
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353 | Dialog::VectorsQuery(title,_check, _description)
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354 | {}
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355 |
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356 | CommandLineDialog::VectorsCommandLineQuery::~VectorsCommandLineQuery()
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357 | {}
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358 |
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359 | bool CommandLineDialog::VectorsCommandLineQuery::handle() {
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360 | std::vector<VectorValue> temporary;
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361 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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362 | temporary = CommandLineParser::getInstance().vm[getTitle()].as< std::vector<VectorValue> >();
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363 | for(std::vector<VectorValue>::iterator iter = temporary.begin(); iter != temporary.end(); ++iter) {
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364 | temp[0] = (*iter).x;
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365 | temp[1] = (*iter).y;
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366 | temp[2] = (*iter).z;
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367 | if ((!check) || (World::getInstance().getDomain().isInside(temp)))
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368 | tmp.push_back(temp);
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369 | else
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370 | DoeLog(1) && (eLog() << Verbose(1) << "Vector " << temp << " would be outside of box domain." << endl);
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371 | }
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372 | return true;
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373 | } else {
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374 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing vectors for " << getTitle() << "." << endl);
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375 | return false;
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376 | }
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377 | }
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378 |
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379 | CommandLineDialog::BoxCommandLineQuery::BoxCommandLineQuery(string title, string _description) :
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380 | Dialog::BoxQuery(title, _description)
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381 | {}
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382 |
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383 | CommandLineDialog::BoxCommandLineQuery::~BoxCommandLineQuery()
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384 | {}
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385 |
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386 | bool CommandLineDialog::BoxCommandLineQuery::handle() {
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387 | BoxValue temp;
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388 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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389 | temp = CommandLineParser::getInstance().vm[getTitle()].as< BoxValue >();
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390 | Matrix M;
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391 | M.set(0,0, temp.xx);
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392 | M.set(0,1, temp.yx);
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393 | M.set(0,2, temp.zx);
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394 | M.set(1,0, temp.yx);
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395 | M.set(1,1, temp.yy);
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396 | M.set(1,2, temp.zy);
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397 | M.set(2,0, temp.zx);
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398 | M.set(2,1, temp.zy);
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399 | M.set(2,2, temp.zz);
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400 | tmp.setM(M);
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401 | return true;
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402 | } else {
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403 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing symmetric box matrix for " << getTitle() << "." << endl);
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404 | return false;
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405 | }
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406 | }
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407 |
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408 | CommandLineDialog::ElementCommandLineQuery::ElementCommandLineQuery(string title, string _description) :
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409 | Dialog::ElementQuery(title, _description)
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410 | {}
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411 |
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412 | CommandLineDialog::ElementCommandLineQuery::~ElementCommandLineQuery()
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413 | {}
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414 |
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415 | bool CommandLineDialog::ElementCommandLineQuery::handle() {
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416 | // TODO: vector of ints and removing first is not correctly implemented yet. How to remove from a vector?
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417 | periodentafel *periode = World::getInstance().getPeriode();
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418 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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419 | int Z = CommandLineParser::getInstance().vm[getTitle()].as< int >();
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420 | tmp = periode->FindElement(Z);
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421 | ASSERT(tmp != NULL, "Invalid element specified in ElementCommandLineQuery");
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422 | return true;
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423 | } else {
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424 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing element for " << getTitle() << "." << endl);
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425 | return false;
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426 | }
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427 | }
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428 |
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429 | CommandLineDialog::ElementsCommandLineQuery::ElementsCommandLineQuery(string title, string _description) :
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430 | Dialog::ElementsQuery(title, _description)
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431 | {}
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432 |
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433 | CommandLineDialog::ElementsCommandLineQuery::~ElementsCommandLineQuery()
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434 | {}
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435 |
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436 | bool CommandLineDialog::ElementsCommandLineQuery::handle() {
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437 | // TODO: vector of ints and removing first is not correctly implemented yet. How to remove from a vector?
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438 | periodentafel *periode = World::getInstance().getPeriode();
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439 | if (CommandLineParser::getInstance().vm.count(getTitle())) {
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440 | vector<int> AllElements = CommandLineParser::getInstance().vm[getTitle()].as< vector<int> >();
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441 | for (vector<int>::iterator ZRunner = AllElements.begin(); ZRunner != AllElements.end(); ++ZRunner) {
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442 | temp = periode->FindElement(*ZRunner);
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443 | ASSERT(temp != NULL, "Invalid element specified in ElementCommandLineQuery");
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444 | tmp.push_back(temp);
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445 | }
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446 | return true;
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447 | } else {
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448 | DoeLog(1) && (eLog() << Verbose(1) << "CommandLineUI parsing error: Missing elements for " << getTitle() << "." << endl);
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449 | return false;
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450 | }
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451 | }
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