| [7e3f11a] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2013 Frederik Heber. All rights reserved. | 
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|  | 5 | * | 
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|  | 6 | * | 
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|  | 7 | *   This file is part of MoleCuilder. | 
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|  | 8 | * | 
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|  | 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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|  | 10 | *    it under the terms of the GNU General Public License as published by | 
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|  | 11 | *    the Free Software Foundation, either version 2 of the License, or | 
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|  | 12 | *    (at your option) any later version. | 
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|  | 13 | * | 
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|  | 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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|  | 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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|  | 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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|  | 17 | *    GNU General Public License for more details. | 
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|  | 18 | * | 
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|  | 19 | *    You should have received a copy of the GNU General Public License | 
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|  | 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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|  | 21 | */ | 
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|  | 22 |  | 
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|  | 23 | /* | 
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|  | 24 | * PythonScripting.cpp | 
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|  | 25 | * | 
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|  | 26 | *  Created on: Aug 26, 2013 | 
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|  | 27 | *      Author: heber | 
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|  | 28 | */ | 
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|  | 29 |  | 
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|  | 30 | // include config.h | 
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|  | 31 | #ifdef HAVE_CONFIG_H | 
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|  | 32 | #include <config.h> | 
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|  | 33 | #endif | 
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|  | 34 |  | 
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|  | 35 | // boost::python uses placement new which is incompatible with MemDebug. | 
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|  | 36 | #include "PythonScripting_impl.hpp" | 
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|  | 37 | #include "PythonScripting.hpp" | 
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|  | 38 |  | 
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| [a93896] | 39 | #include <string> | 
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|  | 40 |  | 
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| [9eb71b3] | 41 | //#include "CodePatterns/MemDebug.hpp" | 
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| [7e3f11a] | 42 |  | 
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| [2cf12a] | 43 | bool executePythonScriptFile(const boost::filesystem::path &pythonfilename) | 
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| [7e3f11a] | 44 | { | 
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|  | 45 | if (exists(pythonfilename)) { | 
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| [a963cf] | 46 | // parse file into a string | 
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|  | 47 | std::ifstream pythonfile(pythonfilename.string().c_str()); | 
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|  | 48 | std::string pythonscript( std::istreambuf_iterator<char>(pythonfile), | 
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|  | 49 | (std::istreambuf_iterator<char>()) ); | 
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|  | 50 | return executePythonScript(pythonscript, pythonfilename.string()); | 
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| [7e3f11a] | 51 | } | 
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| [57388c9] | 52 | return false; | 
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| [7e3f11a] | 53 | } | 
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| [2cf12a] | 54 |  | 
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|  | 55 | bool executePythonScript(const std::string &python_string, const std::string &python_scripttitle) | 
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|  | 56 | { | 
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| [b0060a] | 57 | std::stringstream input(python_string); | 
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|  | 58 | std::stringstream buffer_import; | 
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|  | 59 | std::stringstream buffer_else; | 
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|  | 60 | // move all lines with "import" to the beginning | 
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|  | 61 | std::string current_line; | 
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| [a93896] | 62 | std::string moduleName; | 
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| [b0060a] | 63 | while(std::getline(input,current_line,'\n')){ | 
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| [a93896] | 64 | if (current_line.find("import ") != std::string::npos) { | 
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|  | 65 | if (current_line.find(PYMOLECUILDER_MODULE_NAME) != std::string::npos) { | 
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|  | 66 | // ignore a PyMoleCuilder import, use the AS however. | 
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|  | 67 | const size_t lowerCaseAsPos = current_line.find("as"); | 
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|  | 68 | const size_t upperCaseAsPos = current_line.find("AS"); | 
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|  | 69 | size_t moduleNameStart = std::string::npos; | 
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|  | 70 | if (lowerCaseAsPos != std::string::npos) | 
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|  | 71 | moduleNameStart = lowerCaseAsPos+2+1; | 
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|  | 72 | if (upperCaseAsPos != std::string::npos) | 
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|  | 73 | moduleNameStart = upperCaseAsPos+2+1; | 
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|  | 74 | if (moduleNameStart != std::string::npos) { | 
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|  | 75 | const size_t moduleNameEnd = current_line.find(" ", moduleNameStart); | 
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|  | 76 | moduleName = current_line.substr( | 
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|  | 77 | moduleNameStart, | 
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|  | 78 | moduleNameEnd == std::string::npos ? moduleNameEnd : moduleNameEnd  - moduleNameStart | 
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|  | 79 | ); | 
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|  | 80 | ELOG(2, "Ignoring found " << PYMOLECUILDER_MODULE_NAME << " import, but keeping AS name " << moduleName << "."); | 
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|  | 81 | } else { | 
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|  | 82 | ELOG(2, "Ignoring found " << PYMOLECUILDER_MODULE_NAME << " import."); | 
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|  | 83 | } | 
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|  | 84 | } else { | 
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|  | 85 | buffer_import << current_line << std::endl; | 
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|  | 86 | } | 
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|  | 87 | } else { | 
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| [b0060a] | 88 | buffer_else << current_line << std::endl; | 
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| [a93896] | 89 | } | 
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| [b0060a] | 90 | } | 
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|  | 91 | std::string pythonscript_import( std::istreambuf_iterator<char>(buffer_import), | 
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|  | 92 | (std::istreambuf_iterator<char>()) ); | 
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|  | 93 | std::string pythonscript_else( std::istreambuf_iterator<char>(buffer_else), | 
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|  | 94 | (std::istreambuf_iterator<char>()) ); | 
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|  | 95 |  | 
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| [2cf12a] | 96 | try { | 
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| [1ca493a] | 97 | #ifdef HAVE_PYTHON2 | 
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| [a93896] | 98 | PyImport_AppendInittab( PYMOLECUILDER_MODULE_NAME.c_str(), &initpyMoleCuilder ); | 
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| [1ca493a] | 99 | #else | 
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| [a93896] | 100 | PyImport_AppendInittab( PYMOLECUILDER_MODULE_NAME.c_str(), &PyInit_pyMoleCuilder ); | 
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| [1ca493a] | 101 | #endif | 
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| [2cf12a] | 102 |  | 
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|  | 103 | Py_Initialize(); | 
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|  | 104 |  | 
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|  | 105 | boost::python::object main_module(( | 
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|  | 106 | boost::python::handle<>(boost::python::borrowed(PyImport_AddModule("__main__"))))); | 
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|  | 107 |  | 
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|  | 108 | boost::python::object main_namespace = main_module.attr("__dict__"); | 
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|  | 109 |  | 
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| [b0060a] | 110 | boost::python::handle<> imported(( PyRun_String( pythonscript_import.c_str(), | 
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|  | 111 | Py_file_input, | 
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|  | 112 | main_namespace.ptr(), | 
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|  | 113 | main_namespace.ptr() ) )); | 
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|  | 114 |  | 
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| [2cf12a] | 115 | boost::python::object molecuilder_module( (boost::python::handle<>(PyImport_ImportModule("pyMoleCuilder"))) ); | 
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| [a93896] | 116 | main_namespace[PYMOLECUILDER_MODULE_NAME] = molecuilder_module; | 
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|  | 117 | if (moduleName.size() > 0) | 
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|  | 118 | main_namespace[moduleName] = molecuilder_module; | 
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| [2cf12a] | 119 |  | 
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| [1ca493a] | 120 | std::string enveloped_script("print(\"BEGIN of "+python_scripttitle+":\")\n"); | 
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| [b0060a] | 121 | enveloped_script += pythonscript_else+std::string("\n"); | 
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| [1ca493a] | 122 | enveloped_script += std::string("print(\"END of "+python_scripttitle+":\")\n"); | 
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| [2cf12a] | 123 |  | 
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|  | 124 | boost::python::handle<> ignored(( PyRun_String( enveloped_script.c_str(), | 
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|  | 125 | Py_file_input, | 
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|  | 126 | main_namespace.ptr(), | 
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|  | 127 | main_namespace.ptr() ) )); | 
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|  | 128 |  | 
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|  | 129 | } catch( boost::python::error_already_set ) { | 
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|  | 130 | PyErr_Print(); | 
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|  | 131 | return false; | 
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|  | 132 | } | 
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|  | 133 | return true; | 
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|  | 134 | } | 
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