| [8203ce8] | 1 | /* | 
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|  | 2 | * ConstantPotential.hpp | 
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|  | 3 | * | 
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|  | 4 | *  Created on: May 09, 2013 | 
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|  | 5 | *      Author: heber | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | #ifndef CONSTANTPOTENTIAL_HPP_ | 
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|  | 9 | #define CONSTANTPOTENTIAL_HPP_ | 
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|  | 10 |  | 
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|  | 11 |  | 
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|  | 12 | // include config.h | 
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|  | 13 | #ifdef HAVE_CONFIG_H | 
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|  | 14 | #include <config.h> | 
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|  | 15 | #endif | 
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|  | 16 |  | 
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|  | 17 | #include <limits> | 
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|  | 18 |  | 
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|  | 19 | #include "Potentials/EmpiricalPotential.hpp" | 
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|  | 20 |  | 
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| [713888] | 21 | class PotentialFactory; | 
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| [8203ce8] | 22 | class TrainingData; | 
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|  | 23 |  | 
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|  | 24 | /** This is the implementation of a constant potential to adapt to any offset | 
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|  | 25 | * in the potential energy. | 
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|  | 26 | * | 
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|  | 27 | * This evaluates \f$ k \f$. | 
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|  | 28 | * | 
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|  | 29 | */ | 
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|  | 30 | class ConstantPotential : | 
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|  | 31 | public EmpiricalPotential | 
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|  | 32 | { | 
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|  | 33 | //!> grant unit test access to internal parts | 
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|  | 34 | friend class ConstantPotentialTest; | 
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| [713888] | 35 | //!> grant PotentialFactory access to default cstor | 
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|  | 36 | friend class PotentialFactory; | 
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| [8203ce8] | 37 | // some repeated typedefs to avoid ambiguities | 
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| [e1fe7e] | 38 | typedef FunctionModel::list_of_arguments_t list_of_arguments_t; | 
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| [8203ce8] | 39 | typedef FunctionModel::arguments_t arguments_t; | 
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|  | 40 | typedef FunctionModel::result_t result_t; | 
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|  | 41 | typedef FunctionModel::results_t results_t; | 
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|  | 42 | typedef EmpiricalPotential::derivative_components_t derivative_components_t; | 
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|  | 43 | typedef FunctionModel::parameters_t parameters_t; | 
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| [713888] | 44 | private: | 
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|  | 45 | /** Private default constructor. | 
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|  | 46 | * | 
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|  | 47 | * This prevents creation of potential without set ParticleTypes_t. | 
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|  | 48 | * | 
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| [a82d33] | 49 | * \note PotentialFactory may use this default cstor | 
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|  | 50 | * | 
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| [713888] | 51 | */ | 
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| [a82d33] | 52 | ConstantPotential(); | 
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| [713888] | 53 |  | 
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| [a0d8aa] | 54 | /** Creates the binding model specific for this potential. | 
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|  | 55 | * | 
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|  | 56 | * Private because this is used internally some of the constructors. | 
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|  | 57 | * | 
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|  | 58 | * \param _ParticleTypes particle type for the potential | 
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|  | 59 | * \return binding model | 
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|  | 60 | */ | 
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|  | 61 | BindingModel generateBindingModel(const EmpiricalPotential::ParticleTypes_t &_ParticleTypes) const; | 
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|  | 62 |  | 
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| [8203ce8] | 63 | public: | 
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|  | 64 | ConstantPotential(const ParticleTypes_t &_ParticleTypes); | 
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|  | 65 | ConstantPotential( | 
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|  | 66 | const ParticleTypes_t &_ParticleTypes, | 
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|  | 67 | const double _energy_offset); | 
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|  | 68 | virtual ~ConstantPotential() {} | 
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|  | 69 |  | 
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|  | 70 | /** Setter for parameters as required by FunctionModel interface. | 
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|  | 71 | * | 
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|  | 72 | * \param _params given set of parameters | 
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|  | 73 | */ | 
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|  | 74 | void setParameters(const parameters_t &_params); | 
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|  | 75 |  | 
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|  | 76 | /** Getter for parameters as required by FunctionModel interface. | 
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|  | 77 | * | 
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|  | 78 | * \return set of parameters | 
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|  | 79 | */ | 
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|  | 80 | parameters_t getParameters() const | 
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|  | 81 | { | 
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|  | 82 | return params; | 
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|  | 83 | } | 
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|  | 84 |  | 
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|  | 85 | /** Sets the parameter randomly within the sensible range of each parameter. | 
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|  | 86 | * | 
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|  | 87 | * \param data container with training data for guesstimating range | 
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|  | 88 | */ | 
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|  | 89 | void setParametersToRandomInitialValues(const TrainingData &data); | 
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|  | 90 |  | 
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|  | 91 | /** Getter for the number of parameters of this model function. | 
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|  | 92 | * | 
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|  | 93 | * \return number of parameters | 
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|  | 94 | */ | 
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|  | 95 | size_t getParameterDimension() const | 
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|  | 96 | { | 
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|  | 97 | return 1; | 
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|  | 98 | } | 
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|  | 99 |  | 
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|  | 100 | /** Evaluates the harmonic potential function for the given arguments. | 
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|  | 101 | * | 
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| [e1fe7e] | 102 | * @param listarguments empty list | 
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| [8203ce8] | 103 | * @return value of the potential function | 
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|  | 104 | */ | 
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| [e1fe7e] | 105 | results_t operator()(const list_of_arguments_t &listarguments) const; | 
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| [8203ce8] | 106 |  | 
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|  | 107 | /** Evaluates the derivative of the potential function. | 
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|  | 108 | * | 
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| [e1fe7e] | 109 | * @param listarguments empty list | 
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| [8203ce8] | 110 | * @return vector with derivative with respect to the input degrees of freedom | 
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|  | 111 | */ | 
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| [e1fe7e] | 112 | derivative_components_t derivative(const list_of_arguments_t &listarguments) const; | 
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| [8203ce8] | 113 |  | 
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|  | 114 | /** Evaluates the derivative of the function with the given \a arguments | 
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|  | 115 | * with respect to a specific parameter indicated by \a index. | 
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|  | 116 | * | 
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| [e1fe7e] | 117 | * \param listarguments empty list | 
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| [8203ce8] | 118 | * \param index derivative of which parameter | 
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|  | 119 | * \return result vector containing the derivative with respect to the given | 
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|  | 120 | *         input | 
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|  | 121 | */ | 
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| [e1fe7e] | 122 | results_t parameter_derivative(const list_of_arguments_t &listarguments, const size_t index) const; | 
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| [8203ce8] | 123 |  | 
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| [94453f1] | 124 | /** Returns the functor that converts argument_s into the | 
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|  | 125 | * internal coordinate described by this potential function. | 
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|  | 126 | * | 
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|  | 127 | * \return coordinator functor | 
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|  | 128 | */ | 
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|  | 129 | Coordinator::ptr getCoordinator() const | 
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|  | 130 | { return coordinator; } | 
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|  | 131 |  | 
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| [8203ce8] | 132 | /** Return the token name of this specific potential. | 
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|  | 133 | * | 
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|  | 134 | * \return token name of the potential | 
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|  | 135 | */ | 
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|  | 136 | const std::string& getToken() const | 
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|  | 137 | { return potential_token; } | 
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|  | 138 |  | 
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|  | 139 | /** Returns a vector of parameter names. | 
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|  | 140 | * | 
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|  | 141 | * This is required from the specific implementation | 
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|  | 142 | * | 
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|  | 143 | * \return vector of strings containing parameter names | 
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|  | 144 | */ | 
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|  | 145 | const ParameterNames_t& getParameterNames() const | 
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|  | 146 | { return ParameterNames; } | 
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|  | 147 |  | 
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|  | 148 | /** States whether lower and upper boundaries should be used to constraint | 
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|  | 149 | * the parameter search for this function model. | 
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|  | 150 | * | 
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|  | 151 | * \return true - constraints should be used, false - else | 
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|  | 152 | */ | 
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|  | 153 | bool isBoxConstraint() const { | 
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|  | 154 | return true; | 
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|  | 155 | } | 
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|  | 156 |  | 
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|  | 157 | /** Returns a vector which are the lower boundaries for each parameter_t | 
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|  | 158 | * of this FunctionModel. | 
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|  | 159 | * | 
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|  | 160 | * \return vector of parameter_t resembling lowest allowed values | 
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|  | 161 | */ | 
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|  | 162 | parameters_t getLowerBoxConstraints() const { | 
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|  | 163 | parameters_t lowerbound(getParameterDimension(), -std::numeric_limits<double>::max()); | 
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|  | 164 | return lowerbound; | 
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|  | 165 | } | 
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|  | 166 |  | 
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|  | 167 | /** Returns a vector which are the upper boundaries for each parameter_t | 
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|  | 168 | * of this FunctionModel. | 
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|  | 169 | * | 
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|  | 170 | * \return vector of parameter_t resembling highest allowed values | 
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|  | 171 | */ | 
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|  | 172 | parameters_t getUpperBoxConstraints() const { | 
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|  | 173 | return parameters_t(getParameterDimension(), std::numeric_limits<double>::max()); | 
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|  | 174 | } | 
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|  | 175 |  | 
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| [0f5d38] | 176 | /** Returns a bound function to be used with TrainingData, extracting distances | 
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|  | 177 | * from a Fragment. | 
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|  | 178 | * | 
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|  | 179 | * \return bound function extracting distances from a fragment | 
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|  | 180 | */ | 
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|  | 181 | FunctionModel::filter_t getSpecificFilter() const; | 
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|  | 182 |  | 
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|  | 183 | /** Returns the number of arguments the underlying function requires. | 
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|  | 184 | * | 
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|  | 185 | * \return number of arguments of the function | 
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|  | 186 | */ | 
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|  | 187 | size_t getSpecificArgumentCount() const | 
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|  | 188 | { return 0; } | 
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|  | 189 |  | 
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| [8203ce8] | 190 | enum parameter_enum_t { | 
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|  | 191 | energy_offset=0, | 
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|  | 192 | MAXPARAMS | 
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|  | 193 | }; | 
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|  | 194 |  | 
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| [d5ca1a] | 195 | /** Getter for the graph specifying the binding model of the potential. | 
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|  | 196 | * | 
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| [9c793c] | 197 | * \return BindingModel ref of the binding model | 
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| [d5ca1a] | 198 | */ | 
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| [9c793c] | 199 | const BindingModel& getBindingModel() const | 
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| [d5ca1a] | 200 | { return bindingmodel; } | 
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|  | 201 |  | 
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| [3f8238] | 202 | /** | 
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|  | 203 | * Returns the number of particle types associated with the potential. | 
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|  | 204 | * | 
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|  | 205 | * \return number of particle types | 
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|  | 206 | */ | 
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|  | 207 | unsigned int getParticleTypeNumber() const | 
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|  | 208 | { return 0; } | 
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|  | 209 |  | 
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| [8203ce8] | 210 | private: | 
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|  | 211 | //!> parameter vector with parameters as in enum parameter_enum_t | 
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|  | 212 | parameters_t params; | 
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|  | 213 |  | 
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|  | 214 | //!> static definitions of the parameter name for this potential | 
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|  | 215 | static const ParameterNames_t ParameterNames; | 
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|  | 216 |  | 
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|  | 217 | //!> static token of this potential type | 
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|  | 218 | static const std::string potential_token; | 
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| [94453f1] | 219 |  | 
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|  | 220 | //!> internal coordinator object for converting arguments_t | 
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|  | 221 | static Coordinator::ptr coordinator; | 
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| [d5ca1a] | 222 |  | 
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|  | 223 | //!> binding model for this potential | 
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| [9c793c] | 224 | const BindingModel bindingmodel; | 
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| [8203ce8] | 225 | }; | 
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|  | 226 |  | 
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|  | 227 | #endif /* CONSTANTPOTENTIAL_HPP_ */ | 
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