| [8203ce8] | 1 | /*
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 | 2 |  * ConstantPotential.hpp
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 | 3 |  *
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 | 4 |  *  Created on: May 09, 2013
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
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 | 8 | #ifndef CONSTANTPOTENTIAL_HPP_
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 | 9 | #define CONSTANTPOTENTIAL_HPP_
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 | 10 | 
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 | 11 | 
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 | 12 | // include config.h
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 | 13 | #ifdef HAVE_CONFIG_H
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 | 14 | #include <config.h>
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 | 15 | #endif
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 | 16 | 
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 | 17 | #include <limits>
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 | 18 | 
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 | 19 | #include "Potentials/EmpiricalPotential.hpp"
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 | 20 | 
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| [713888] | 21 | class PotentialFactory;
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| [8203ce8] | 22 | class TrainingData;
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 | 23 | 
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 | 24 | /** This is the implementation of a constant potential to adapt to any offset
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 | 25 |  * in the potential energy.
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 | 26 |  *
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 | 27 |  * This evaluates \f$ k \f$.
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 | 28 |  *
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 | 29 |  */
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 | 30 | class ConstantPotential :
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 | 31 |   public EmpiricalPotential
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 | 32 | {
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 | 33 |   //!> grant unit test access to internal parts
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 | 34 |   friend class ConstantPotentialTest;
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| [713888] | 35 |   //!> grant PotentialFactory access to default cstor
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 | 36 |   friend class PotentialFactory;
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| [8203ce8] | 37 |   // some repeated typedefs to avoid ambiguities
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| [e1fe7e] | 38 |   typedef FunctionModel::list_of_arguments_t list_of_arguments_t;
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| [8203ce8] | 39 |   typedef FunctionModel::arguments_t arguments_t;
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 | 40 |   typedef FunctionModel::result_t result_t;
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 | 41 |   typedef FunctionModel::results_t results_t;
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 | 42 |   typedef EmpiricalPotential::derivative_components_t derivative_components_t;
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 | 43 |   typedef FunctionModel::parameters_t parameters_t;
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| [713888] | 44 | private:
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 | 45 |   /** Private default constructor.
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 | 46 |    *
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 | 47 |    * This prevents creation of potential without set ParticleTypes_t.
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 | 48 |    *
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| [a82d33] | 49 |    * \note PotentialFactory may use this default cstor
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 | 50 |    *
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| [713888] | 51 |    */
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| [a82d33] | 52 |   ConstantPotential();
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| [713888] | 53 | 
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| [a0d8aa] | 54 |   /** Creates the binding model specific for this potential.
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 | 55 |    *
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 | 56 |    * Private because this is used internally some of the constructors.
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 | 57 |    *
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 | 58 |    * \param _ParticleTypes particle type for the potential
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 | 59 |    * \return binding model
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 | 60 |    */
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 | 61 |   BindingModel generateBindingModel(const EmpiricalPotential::ParticleTypes_t &_ParticleTypes) const;
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 | 62 | 
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| [8203ce8] | 63 | public:
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 | 64 |   ConstantPotential(const ParticleTypes_t &_ParticleTypes);
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 | 65 |   ConstantPotential(
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 | 66 |       const ParticleTypes_t &_ParticleTypes,
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 | 67 |       const double _energy_offset);
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 | 68 |   virtual ~ConstantPotential() {}
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 | 69 | 
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 | 70 |   /** Setter for parameters as required by FunctionModel interface.
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 | 71 |    *
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 | 72 |    * \param _params given set of parameters
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 | 73 |    */
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 | 74 |   void setParameters(const parameters_t &_params);
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 | 75 | 
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 | 76 |   /** Getter for parameters as required by FunctionModel interface.
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 | 77 |    *
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 | 78 |    * \return set of parameters
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 | 79 |    */
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 | 80 |   parameters_t getParameters() const
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 | 81 |   {
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 | 82 |     return params;
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 | 83 |   }
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 | 84 | 
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 | 85 |   /** Sets the parameter randomly within the sensible range of each parameter.
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 | 86 |    *
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 | 87 |    * \param data container with training data for guesstimating range
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 | 88 |    */
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 | 89 |   void setParametersToRandomInitialValues(const TrainingData &data);
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 | 90 | 
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 | 91 |   /** Getter for the number of parameters of this model function.
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 | 92 |    *
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 | 93 |    * \return number of parameters
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 | 94 |    */
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 | 95 |   size_t getParameterDimension() const
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 | 96 |   {
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 | 97 |     return 1;
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 | 98 |   }
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 | 99 | 
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 | 100 |   /** Evaluates the harmonic potential function for the given arguments.
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 | 101 |    *
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| [e1fe7e] | 102 |    * @param listarguments empty list
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| [8203ce8] | 103 |    * @return value of the potential function
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 | 104 |    */
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| [e1fe7e] | 105 |   results_t operator()(const list_of_arguments_t &listarguments) const;
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| [8203ce8] | 106 | 
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 | 107 |   /** Evaluates the derivative of the potential function.
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 | 108 |    *
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| [e1fe7e] | 109 |    * @param listarguments empty list
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| [8203ce8] | 110 |    * @return vector with derivative with respect to the input degrees of freedom
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 | 111 |    */
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| [e1fe7e] | 112 |   derivative_components_t derivative(const list_of_arguments_t &listarguments) const;
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| [8203ce8] | 113 | 
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 | 114 |   /** Evaluates the derivative of the function with the given \a arguments
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 | 115 |    * with respect to a specific parameter indicated by \a index.
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 | 116 |    *
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| [e1fe7e] | 117 |    * \param listarguments empty list
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| [8203ce8] | 118 |    * \param index derivative of which parameter
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 | 119 |    * \return result vector containing the derivative with respect to the given
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 | 120 |    *         input
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 | 121 |    */
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| [e1fe7e] | 122 |   results_t parameter_derivative(const list_of_arguments_t &listarguments, const size_t index) const;
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| [8203ce8] | 123 | 
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| [94453f1] | 124 |   /** Returns the functor that converts argument_s into the
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 | 125 |    * internal coordinate described by this potential function.
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 | 126 |    *
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 | 127 |    * \return coordinator functor
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 | 128 |    */
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 | 129 |   Coordinator::ptr getCoordinator() const
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 | 130 |   { return coordinator; }
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 | 131 | 
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| [8203ce8] | 132 |   /** Return the token name of this specific potential.
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 | 133 |    *
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 | 134 |    * \return token name of the potential
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 | 135 |    */
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 | 136 |   const std::string& getToken() const
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 | 137 |   { return potential_token; }
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 | 138 | 
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 | 139 |   /** Returns a vector of parameter names.
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 | 140 |    *
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 | 141 |    * This is required from the specific implementation
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 | 142 |    *
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 | 143 |    * \return vector of strings containing parameter names
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 | 144 |    */
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 | 145 |   const ParameterNames_t& getParameterNames() const
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 | 146 |   { return ParameterNames; }
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 | 147 | 
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 | 148 |   /** States whether lower and upper boundaries should be used to constraint
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 | 149 |    * the parameter search for this function model.
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 | 150 |    *
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 | 151 |    * \return true - constraints should be used, false - else
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 | 152 |    */
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 | 153 |   bool isBoxConstraint() const {
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 | 154 |     return true;
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 | 155 |   }
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 | 156 | 
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 | 157 |   /** Returns a vector which are the lower boundaries for each parameter_t
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 | 158 |    * of this FunctionModel.
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 | 159 |    *
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 | 160 |    * \return vector of parameter_t resembling lowest allowed values
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 | 161 |    */
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 | 162 |   parameters_t getLowerBoxConstraints() const {
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 | 163 |     parameters_t lowerbound(getParameterDimension(), -std::numeric_limits<double>::max());
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 | 164 |     return lowerbound;
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 | 165 |   }
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 | 166 | 
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 | 167 |   /** Returns a vector which are the upper boundaries for each parameter_t
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 | 168 |    * of this FunctionModel.
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 | 169 |    *
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 | 170 |    * \return vector of parameter_t resembling highest allowed values
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 | 171 |    */
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 | 172 |   parameters_t getUpperBoxConstraints() const {
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 | 173 |     return parameters_t(getParameterDimension(), std::numeric_limits<double>::max());
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 | 174 |   }
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 | 175 | 
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| [0f5d38] | 176 |   /** Returns a bound function to be used with TrainingData, extracting distances
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 | 177 |    * from a Fragment.
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 | 178 |    *
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 | 179 |    * \return bound function extracting distances from a fragment
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 | 180 |    */
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 | 181 |   FunctionModel::filter_t getSpecificFilter() const;
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 | 182 | 
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 | 183 |   /** Returns the number of arguments the underlying function requires.
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 | 184 |    *
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 | 185 |    * \return number of arguments of the function
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 | 186 |    */
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 | 187 |   size_t getSpecificArgumentCount() const
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 | 188 |   { return 0; }
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 | 189 | 
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| [8203ce8] | 190 |   enum parameter_enum_t {
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 | 191 |     energy_offset=0,
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 | 192 |     MAXPARAMS
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 | 193 |   };
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 | 194 | 
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| [d5ca1a] | 195 |   /** Getter for the graph specifying the binding model of the potential.
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 | 196 |    *
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| [9c793c] | 197 |    * \return BindingModel ref of the binding model
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| [d5ca1a] | 198 |    */
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| [9c793c] | 199 |   const BindingModel& getBindingModel() const
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| [d5ca1a] | 200 |   { return bindingmodel; }
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 | 201 | 
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| [3f8238] | 202 |   /**
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 | 203 |    * Returns the number of particle types associated with the potential.
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 | 204 |    *
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 | 205 |    * \return number of particle types
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 | 206 |    */
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 | 207 |   unsigned int getParticleTypeNumber() const
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 | 208 |   { return 0; }
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 | 209 | 
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| [8203ce8] | 210 | private:
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 | 211 |   //!> parameter vector with parameters as in enum parameter_enum_t
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 | 212 |   parameters_t params;
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 | 213 | 
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 | 214 |   //!> static definitions of the parameter name for this potential
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 | 215 |   static const ParameterNames_t ParameterNames;
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 | 216 | 
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 | 217 |   //!> static token of this potential type
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 | 218 |   static const std::string potential_token;
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| [94453f1] | 219 | 
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 | 220 |   //!> internal coordinator object for converting arguments_t
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 | 221 |   static Coordinator::ptr coordinator;
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| [d5ca1a] | 222 | 
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 | 223 |   //!> binding model for this potential
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| [9c793c] | 224 |   const BindingModel bindingmodel;
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| [8203ce8] | 225 | };
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 | 226 | 
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 | 227 | #endif /* CONSTANTPOTENTIAL_HPP_ */
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