/*
* Project: MoleCuilder
* Description: creates and alters molecular systems
* Copyright (C) 2012 University of Bonn. All rights reserved.
* Copyright (C) 2013 Frederik Heber. All rights reserved.
* Please see the COPYING file or "Copyright notice" in builder.cpp for details.
*
*
* This file is part of MoleCuilder.
*
* MoleCuilder is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 2 of the License, or
* (at your option) any later version.
*
* MoleCuilder is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MoleCuilder. If not, see .
*/
/*
* ConstantPotential.cpp
*
* Created on: May 09, 2013
* Author: heber
*/
// include config.h
#ifdef HAVE_CONFIG_H
#include
#endif
#include "CodePatterns/MemDebug.hpp"
#include "ConstantPotential.hpp"
#include // for 'map_list_of()'
#include
#include
#include
#include
#include "CodePatterns/Assert.hpp"
#include "FunctionApproximation/Extractors.hpp"
#include "FunctionApproximation/TrainingData.hpp"
#include "Potentials/helpers.hpp"
#include "Potentials/ParticleTypeCheckers.hpp"
#include "Potentials/InternalCoordinates/OneBody_Constant.hpp"
class Fragment;
// static definitions
const ConstantPotential::ParameterNames_t
ConstantPotential::ParameterNames =
boost::assign::list_of
("energy_offset") //
;
const std::string ConstantPotential::potential_token("constant");
Coordinator::ptr ConstantPotential::coordinator(Memory::ignore(new OneBody_Constant()));
static BindingModel generateBindingModel(const EmpiricalPotential::ParticleTypes_t &_ParticleTypes)
{
// fill nodes
ASSERT( _ParticleTypes.size() <= (size_t)1,
"generateBindingModel() - ConstantPotential needs zero or one type.");
BindingModel::vector_nodes_t nodes;
if (_ParticleTypes.size() == (size_t)1)
nodes.push_back( FragmentNode(_ParticleTypes.front(), 0) );
// there are no edges
HomologyGraph::edges_t edges;
return BindingModel(nodes, edges);
}
ConstantPotential::ConstantPotential() :
EmpiricalPotential(),
params(parameters_t(MAXPARAMS, 0.)),
bindingmodel(BindingModel())
{
// have some decent defaults for parameter_derivative checking
params[energy_offset] = 0.1;
}
ConstantPotential::ConstantPotential(
const ParticleTypes_t &_ParticleTypes
) :
EmpiricalPotential(_ParticleTypes),
params(parameters_t(MAXPARAMS, 0.)),
bindingmodel(generateBindingModel(_ParticleTypes))
{
// have some decent defaults for parameter_derivative checking
params[energy_offset] = 0.1;
}
ConstantPotential::ConstantPotential(
const ParticleTypes_t &_ParticleTypes,
const double _energy_offset) :
EmpiricalPotential(_ParticleTypes),
params(parameters_t(MAXPARAMS, 0.)),
bindingmodel(generateBindingModel(_ParticleTypes))
{
params[energy_offset] = _energy_offset;
}
void ConstantPotential::setParameters(const parameters_t &_params)
{
const size_t paramsDim = _params.size();
ASSERT( paramsDim <= getParameterDimension(),
"ConstantPotential::setParameters() - we need not more than "
+toString(getParameterDimension())+" parameters.");
for(size_t i=0;i