/* * Project: MoleCuilder * Description: creates and alters molecular systems * Copyright (C) 2013 Frederik Heber. All rights reserved. * Please see the COPYING file or "Copyright notice" in builder.cpp for details. * * * This file is part of MoleCuilder. * * MoleCuilder is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 2 of the License, or * (at your option) any later version. * * MoleCuilder is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with MoleCuilder. If not, see . */ /* * FourBody_TorsionAngle.cpp * * Created on: 03.09.2013 * Author: heber */ // include config.h #ifdef HAVE_CONFIG_H #include #endif #include "CodePatterns/MemDebug.hpp" #include "FourBody_TorsionAngle.hpp" #include "CodePatterns/Assert.hpp" #include #include "Potentials/helpers.hpp" double FourBody_TorsionAngle::operator()(const FunctionModel::arguments_t &arguments) const { ASSERT( arguments.size() == 6, "FourBody_TorsionAngle() - require exactly six arguments."); const double &r_ij = arguments[0].distance; // 01 const double &r_ik = arguments[1].distance; // 02 const double &r_il = arguments[2].distance; // 03 const double &r_jk = arguments[3].distance; // 12 const double &r_jl = arguments[4].distance; // 13 const double &r_kl = arguments[5].distance; // 23 const double h_1 = .5*sqrt(2.*(Helpers::pow(r_ij,2)+Helpers::pow(r_ik,2))-Helpers::pow(r_jk,2)); const double h_2 = .5*sqrt(2.*(Helpers::pow(r_jl,2)+Helpers::pow(r_kl,2))-Helpers::pow(r_jk,2)); const double angle = Helpers::pow(h_1,2) + Helpers::pow(h_2,2) - Helpers::pow(r_il,2); const double divisor = 2.* h_1 * h_2; // LOG(2, "DEBUG: cos(theta)= " << angle/divisor); if (divisor == 0.) return 0.; else return angle/divisor; }