/*
* Project: MoleCuilder
* Description: creates and alters molecular systems
* Copyright (C) 2013 Frederik Heber. All rights reserved.
* Please see the COPYING file or "Copyright notice" in builder.cpp for details.
*
*
* This file is part of MoleCuilder.
*
* MoleCuilder is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 2 of the License, or
* (at your option) any later version.
*
* MoleCuilder is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MoleCuilder. If not, see .
*/
/*
* FourBody_TorsionAngle.cpp
*
* Created on: 03.09.2013
* Author: heber
*/
// include config.h
#ifdef HAVE_CONFIG_H
#include
#endif
#include "CodePatterns/MemDebug.hpp"
#include "FourBody_TorsionAngle.hpp"
#include "CodePatterns/Assert.hpp"
#include
#include "Potentials/helpers.hpp"
double FourBody_TorsionAngle::operator()(const FunctionModel::arguments_t &arguments) const
{
ASSERT( arguments.size() == 6,
"FourBody_TorsionAngle() - require exactly six arguments.");
const double &r_ij = arguments[0].distance; // 01
const double &r_ik = arguments[1].distance; // 02
const double &r_il = arguments[2].distance; // 03
const double &r_jk = arguments[3].distance; // 12
const double &r_jl = arguments[4].distance; // 13
const double &r_kl = arguments[5].distance; // 23
const double h_1 = .5*sqrt(2.*(Helpers::pow(r_ij,2)+Helpers::pow(r_ik,2))-Helpers::pow(r_jk,2));
const double h_2 = .5*sqrt(2.*(Helpers::pow(r_jl,2)+Helpers::pow(r_kl,2))-Helpers::pow(r_jk,2));
const double angle = Helpers::pow(h_1,2) + Helpers::pow(h_2,2) - Helpers::pow(r_il,2);
const double divisor = 2.* h_1 * h_2;
// LOG(2, "DEBUG: cos(theta)= " << angle/divisor);
if (divisor == 0.)
return 0.;
else
return angle/divisor;
}