1 | /*
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2 | * XmlParser.hpp
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3 | *
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4 | * Created on: Mar 23, 2012
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5 | * Author: heber
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6 | */
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7 |
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8 | #ifndef XMLPARSER_HPP_
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9 | #define XMLPARSER_HPP_
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10 |
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11 | // include config.h
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12 | #ifdef HAVE_CONFIG_H
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13 | #include <config.h>
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14 | #endif
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15 |
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16 | #include <map>
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17 | #include <string>
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18 |
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19 | #include "FormatParser.hpp"
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20 | #include "FormatParserTrait.hpp"
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21 | #include "FormatParserInterface.hpp"
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22 | #include "FormatParser_common.hpp"
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23 | #include "ParserTypes.hpp"
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24 |
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25 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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26 | #include "LinearAlgebra/Vector.hpp"
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27 |
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28 | // declaration of specialized FormatParserTrait
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29 | template<>
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30 | struct FormatParserTrait<xml>
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31 | {
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32 | //!> Name of the parser
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33 | static const std::string name;
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34 | //!> suffix of the files the parser understands to read and write
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35 | static const std::string suffix;
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36 | //!> ParserTypes enumeration for the parser
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37 | static const enum ParserTypes type;
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38 | };
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39 |
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40 | class ParserXmlUnitTest;
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41 |
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42 | /**
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43 | * Parser for XYZ files.
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44 | */
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45 | template <>
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46 | class FormatParser< xml > : virtual public FormatParserInterface, public FormatParser_common
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47 | {
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48 | //!> grant unit test access to private parts
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49 | friend class ParserXmlUnitTest;
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50 | //!> grant mem debugger access
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51 | friend void AddStaticEntitiestoIgnoreList();
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52 | public:
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53 | FormatParser();
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54 | virtual ~FormatParser();
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55 | void load(std::istream* file);
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56 | void save(std::ostream* file, const std::vector<atom *> &atoms);
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57 |
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58 | protected:
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59 | void AtomInserted(atomId_t);
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60 | void AtomRemoved(atomId_t);
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61 |
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62 | private:
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63 | //!> structure that contains all information from the xml file
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64 | struct scafacos {
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65 | std::string name;
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66 | std::string description;
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67 | std::string reference_method;
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68 | double error_potential;
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69 | double error_field;
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70 | struct configuration {
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71 | Vector offset;
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72 | RealSpaceMatrix box;
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73 | bool periodicity[NDIM];
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74 | std::string epsilon;
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75 |
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76 | struct particle {
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77 | Vector position;
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78 | double q;
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79 | double potential;
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80 | Vector field;
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81 |
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82 | bool operator==(const particle &p) const;
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83 | bool operator!=(const particle &p) const {
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84 | return !((*this) == p);
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85 | }
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86 | };
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87 | std::vector<struct particle> p;
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88 |
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89 | bool operator==(const configuration &c) const;
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90 | bool operator!=(const configuration &c) const {
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91 | return !((*this) == c);
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92 | }
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93 | } config;
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94 |
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95 | bool operator==(const scafacos &s) const;
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96 | bool operator!=(const scafacos &s) const {
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97 | return !((*this) == s);
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98 | }
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99 | } data;
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100 |
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101 | //!> additional parser-specific information for an atom.
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102 | struct additionalAtomInfo {
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103 | /** Default constructor for additionalAtomInfo.
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104 | *
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105 | * Sets all parser-specific values to zero.
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106 | */
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107 | additionalAtomInfo() :
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108 | charge(0.),
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109 | potential(0),
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110 | field(zeroVec)
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111 | {}
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112 |
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113 | /** Default constructor for additionalAtomInfo.
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114 | *
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115 | */
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116 | additionalAtomInfo(double _charge, double _potential, const Vector& _field) :
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117 | charge(_charge),
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118 | potential(_potential),
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119 | field(_field)
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120 | {}
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121 |
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122 | //!> charge of the atom
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123 | double charge;
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124 | //!> potential at position of atom
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125 | double potential;
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126 | //!> field at position of atom
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127 | Vector field;
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128 | };
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129 |
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130 | //!> typedef for map to associate additional parser-specific information to each atom.
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131 | typedef std::map< atomId_t, additionalAtomInfo> AtomInfoMap_t;
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132 |
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133 | //!> map to associate additional parser-specific information to each atom.
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134 | AtomInfoMap_t additionalAtomData;
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135 |
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136 | //!> static instance with default additional atom information
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137 | static additionalAtomInfo defaultAtomInfo;
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138 |
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139 | /** Getter for additionalAtomInfo.
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140 | *
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141 | * @param _atom constant ref to atom
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142 | * @return constant reference to additional atom info container,
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143 | * otherwise to default atom info
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144 | */
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145 | const additionalAtomInfo& getAtomData(const atom &_atom) const;
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146 | };
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147 |
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148 |
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149 | #endif /* XMLPARSER_HPP_ */
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